Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01593 and BPUM_0876
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_01593___yhcX.1.24716.seq
# -bsequence dna-align/BPUM_0876___yhcX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01593___yhcX-BPUM_0876___yhcX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01593___yhcX-BPUM_0876___yhcX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01593___yhcX
# 2: BPUM_0876___yhcX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1558
# Identity: 1210/1558 (77.7%)
# Similarity: 1210/1558 (77.7%)
# Gaps: 35/1558 ( 2.2%)
# Score: 4628.5
#
#
#=======================================
BSNT_01593___ 1 TTGTCTGAGAAATTAGATTTGACCCGGTTTGAAAAGAAAATGGTTATCCG 50
.||.|.||.|||.||||.||.||.||.||||||||.|.||||||.|||||
BPUM_0876___y 1 ATGGCAGAAAAACTAGACTTAACGCGTTTTGAAAAAAGAATGGTGATCCG 50
BSNT_01593___ 51 CAATAT---CGAAGAGAAAGACATCGACAAGATTATCGATCTTCAAAAGG 97
.||||| .|||||| ||.||.|||...||.||.|...|.|||.|||
BPUM_0876___y 51 TAATATTCGGGAAGAG---GATATTGACCGAATCATTGCGTTGCAAGAGG 97
BSNT_01593___ 98 ACTGCTTTCCGGGGATGGAACCTTGGAAGCGAGAGCA--TTTAATCAGCC 145
..||||||||.||.|||||.||||||||.|||||.|| ||.|| ||||
BPUM_0876___y 98 TATGCTTTCCAGGCATGGACCCTTGGAAACGAGAACATCTTGAA--AGCC 145
BSNT_01593___ 146 ATTTGGAGCATTTTCCAGACGGGCAGTTTTGTGCAGAATTCGAAGGTGAA 195
||.|.||||||||.|||||.||||||||||||||.||||||||.||.|||
BPUM_0876___y 146 ATCTTGAGCATTTCCCAGAAGGGCAGTTTTGTGCTGAATTCGAGGGAGAA 195
BSNT_01593___ 196 ATTATCGGTTCGTGCTCAAGTCTCCTGATTAACTTTGATGAATATGATGA 245
||.||.||.||.||.||||||.|..|.|||||||||||.|||||.|||||
BPUM_0876___y 196 ATCATTGGCTCTTGTTCAAGTTTATTAATTAACTTTGACGAATACGATGA 245
BSNT_01593___ 246 CCGCCATACGTGGCAGGACATTACAGATGACGGTTATATCACCAACCATA 295
.|||||.|||||||||||||||||||||||.||.||.||.||.|||||||
BPUM_0876___y 246 TCGCCACACGTGGCAGGACATTACAGATGATGGGTACATTACAAACCATA 295
BSNT_01593___ 296 ATCCTGACGGCTTGAATATGTACGGAATTGAAGTCATGGTGCACCCGAAA 345
||||.||.||..||||||||||||||||.||||||||||||...||..|.
BPUM_0876___y 296 ATCCGGATGGAATGAATATGTACGGAATCGAAGTCATGGTGAGTCCTGAG 345
BSNT_01593___ 346 TACAGACGAATGAAGATCGGCCACCGTTTGTACGAGGCGAGAAAGGACTT 395
|||.||||||||||.||.||.||.||||||||.||.||||||||.||.||
BPUM_0876___y 346 TACCGACGAATGAAAATTGGACATCGTTTGTATGAAGCGAGAAAAGATTT 395
BSNT_01593___ 396 AGCCAGACGCTTAAACCTGAAAAGCATCATCATAGGCGGACGGATTCCAA 445
|||.|||.|.|||||..|.||||||||||||||.||||||||.|||||.|
BPUM_0876___y 396 AGCAAGAAGATTAAATTTAAAAAGCATCATCATTGGCGGACGCATTCCGA 445
BSNT_01593___ 446 ACTATCACAAATATGCAGATGAAATGACAGCGAGAGAGTATGTTGAACAG 495
|||||||.|||||...|||.||||||||..|..|..|||||||.||.|||
BPUM_0876___y 446 ACTATCATAAATACCAAGAGGAAATGACGCCTCGCCAGTATGTGGAGCAG 495
BSNT_01593___ 496 GTGACACGC--CACCAAATATACGATCCGGTTCTTTCTTTTCAGCT---- 539
|| ||.|| ||.|||||.||.|||||.|||.|.|||||||||||
BPUM_0876___y 496 GT--CATGCTTCATCAAATCTATGATCCTGTTTTATCTTTTCAGCTATTA 543
BSNT_01593___ 540 GATGAACGGCTTTACCCTTATGCGAATTAACCCGAATTATCTCCCAGATG 589
.||||| ||||..||||||||.||.||.||||||||..|.|||||||
BPUM_0876___y 544 AATGAA----TTTAGTCTTATGCGGATCAATCCGAATTACTTGCCAGATG 589
BSNT_01593___ 590 ATACAGCTTCGATCAAGTATGCGACGCTGATGGAATGGAATAATGTCGAT 639
|||.|||.||||.||..|||||.|||.|.|||||||||||.|||||||||
BPUM_0876___y 590 ATAAAGCATCGAGCACATATGCAACGTTAATGGAATGGAACAATGTCGAT 639
BSNT_01593___ 640 TATCTACCGCAGCAGA-CAAAACGCTATTATAAATCGGCGTTCCCTGTTA 688
||||..||||| | |.|||.|.||.|||||||||||.|||||||||.
BPUM_0876___y 640 TATCGCCCGCA----ATCGAAAAGGTACTATAAATCGGCATTCCCTGTTC 685
BSNT_01593___ 689 GAATTTGTGTGATCCAATACGAAATGAAGAAAATTTATTCCTTTGAGGAA 738
|||||||||||||.|||||.|.||||||..|||||.||||||||||.|||
BPUM_0876___y 686 GAATTTGTGTGATTCAATATGCAATGAAACAAATTCATTCCTTTGAAGAA 735
BSNT_01593___ 739 TTTGCGAATCAAGTAGAATACTATGTCGATGTTGCTTCCGACGCAAGATC 788
|||..||||||.||.||.||.|||||.|||||.||.||.||.|||..|.|
BPUM_0876___y 736 TTTATGAATCAGGTCGAGTATTATGTAGATGTCGCATCAGATGCATCAGC 785
BSNT_01593___ 789 TGATTTTGCGGTGTTCCCGGAAATTTTCACAACCCAGCTGATGTCTTTCC 838
|||.|||||.||.|||||.|||||||||||.||.|||||.|||||||...
BPUM_0876___y 786 TGACTTTGCCGTATTCCCAGAAATTTTCACGACGCAGCTCATGTCTTATT 835
BSNT_01593___ 839 TTGAGGAACGGTCACCGAG-CTTGGCGGTGCAGAGAATTACCGAGTATAC 887
|.||.||.||||||||.|| ||| ||.||||||.|||||||.||.|||||
BPUM_0876___y 836 TAGAAGAGCGGTCACCAAGTCTT-GCTGTGCAGCGAATTACGGAATATAC 884
BSNT_01593___ 888 AGAAGATTACATCAGCCTGTTTACTGACTTGGCTGTGAAGTATAACGTCA 937
||||||.|||||.|...||||.||.|||.|..|||||||.||||||.|.|
BPUM_0876___y 885 AGAAGACTACATTAATTTGTTCACAGACCTTTCTGTGAAATATAACATTA 934
BSNT_01593___ 938 ACATTATCGGCGGATCTCATTTCGTCGAAGAGGAAGGCAAGATCTATAAT 987
|.||.||||||||.|||||.|||||.|||||.|||||.||.|||||||||
BPUM_0876___y 935 ATATCATCGGCGGTTCTCACTTCGTGGAAGAAGAAGGGAAAATCTATAAT 984
BSNT_01593___ 988 ATCGCTTACCTGTTCAGACGGGACGGAACAATCGAAAAGCAATACAAACT 1037
||.||.||..|.||.|||||.||.|||||.||.|||||||||||.||.||
BPUM_0876___y 985 ATTGCCTATTTATTTAGACGTGATGGAACGATTGAAAAGCAATATAAGCT 1034
BSNT_01593___ 1038 CCATATTACGCCGAATGAACGCAAATGGTGGGGGA--TCAGCGCAGGAGA 1085
.|||||.||||||||.|||.|.||||||||||||| ||| ||.||.||
BPUM_0876___y 1035 TCATATCACGCCGAACGAAAGAAAATGGTGGGGGATTTCA--GCTGGTGA 1082
BSNT_01593___ 1086 CCAAGTTCGCGTGTTTGATACGGACTGCGGGAAAATCGCGATCCAGATCT 1135
.|||||..|.||.|||||||||||.|||||.|||||.||||||||.||.|
BPUM_0876___y 1083 TCAAGTCAGGGTATTTGATACGGATTGCGGCAAAATTGCGATCCAAATTT 1132
BSNT_01593___ 1136 GTTATGACATTGAATTTCCTGAGCTTGCCCGGATTGCGGCTGATAAAGGA 1185
|.||.||.|||||||||||.||||||||..||||.||.|||||.||||||
BPUM_0876___y 1133 GCTACGATATTGAATTTCCAGAGCTTGCAAGGATCGCAGCTGACAAAGGA 1182
BSNT_01593___ 1186 GCCAAAATCATCTTTACGCCATTTTGTACAGAAGACCGTCAAGGCTATCT 1235
||.|||||.||.||.||.||.|||||||||||||||||.|||||||||.|
BPUM_0876___y 1183 GCAAAAATTATTTTCACTCCGTTTTGTACAGAAGACCGCCAAGGCTATTT 1232
BSNT_01593___ 1236 GCGTGTCAGATACTGTTCGCAGGCTAGAGCGGTTGAAAATCAAATTTATA 1285
..|.||..|.||||||.|.|||||.||||||||||||||.||.|||||||
BPUM_0876___y 1233 AAGGGTACGTTACTGTGCACAGGCGAGAGCGGTTGAAAACCAGATTTATA 1282
BSNT_01593___ 1286 CGGTTATCTCTGGAACGGTCGGAAACCTTCCGCAAACGGAAAACATGGAT 1335
|.||.|||||||||||.||.||.||||||||||||||.|||||.||||||
BPUM_0876___y 1283 CCGTCATCTCTGGAACAGTTGGCAACCTTCCGCAAACCGAAAATATGGAT 1332
BSNT_01593___ 1336 ATCCAATACGCCCAGTCAGGC-ATCTTTGCCCCGTCTGATTTTGAATTCG 1384
.|.|||||.||.||.|| ||| ||.||.|||||.||.||.||||||||.|
BPUM_0876___y 1333 GTTCAATATGCACAATC-GGCTATTTTCGCCCCATCAGACTTTGAATTTG 1381
BSNT_01593___ 1385 CCCGAGACGGCATTGTCGGCGAAACAAACCCGAATATTGAAATGGTTGTC 1434
|..||||.||.|||||.||.||....|||||.||.|||||.|||||.|||
BPUM_0876___y 1382 CAAGAGATGGGATTGTAGGAGAGTGTAACCCAAACATTGAGATGGTCGTC 1431
BSNT_01593___ 1435 ATCGGCGATGTTGACCTGGAAATTCTCAGAAGACAGCGCCAAAACGGTAC 1484
.|.||.|||||.||..|.||||||.|.||||||||..|.|||.|.||.||
BPUM_0876___y 1432 GTAGGTGATGTCGATTTAGAAATTTTAAGAAGACAAAGACAAGATGGGAC 1481
BSNT_01593___ 1485 AGTGCGCCAGCTAAAAGACAGACGGCGTGATATTTATCATATTCAATATA 1534
.||.||.|||||.||||||.||.|..|.||..|.||.||||||.||||||
BPUM_0876___y 1482 TGTACGTCAGCTGAAAGACCGAAGAAGAGACGTGTACCATATTGAATATA 1531
BSNT_01593___ 1535 AAAAATAA 1542
|.||||||
BPUM_0876___y 1532 AGAAATAA 1539
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