Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01583 and BPUM_0867
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_01583.1.24716.seq
# -bsequence dna-align/BPUM_0867___yhcP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01583-BPUM_0867___yhcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01583-BPUM_0867___yhcP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01583
# 2: BPUM_0867___yhcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1166
# Identity: 564/1166 (48.4%)
# Similarity: 564/1166 (48.4%)
# Gaps: 421/1166 (36.1%)
# Score: 1238.5
#
#
#=======================================
BSNT_01583 1 ----------TTGCGGGATGGCATAGGAAAGC------------------ 22
.|| |||| |||.|.||||||
BPUM_0867___y 1 ATGAATTCAGGTG-GGGA--GCAAATGAAAGCCAAGCCGTCAATGATTCA 47
BSNT_01583 23 ----------GT--GCGGCAT-----CCGC-----------TCTATTCCT 44
|| ||||.|| |.|| |.|||.|.|
BPUM_0867___y 48 TAAAAAGCTTGTAGGCGGAATGATAGCAGCAGGTCTCATTTTTTATGCTT 97
BSNT_01583 45 GTGCGGAGTCCTTG--TGATGCTGGCTGTAAGCT--CAG--CCATCGTAT 88
...|.|.||.|||| |.|||.||..|.|.|||| ||| |.||
BPUM_0867___y 98 TCACCGCGTACTTGATTTATGTTGCGTTTCAGCTGACAGGACAAT----- 142
BSNT_01583 89 CAAGCGCGATGTATATC--CTGTCTTTTCCAGGTCAGGC-ATCT----GG 131
||.||.|.| |.|||||.||| |.|..| ||.| ||
BPUM_0867___y 143 --------ATTTAGAGCAGCAGTCTTCTCC---TAAAACGATTTTAACGG 181
BSNT_01583 132 AATAACAAAAGAA-CAAGTGACGAAGCACATGA--AGAA----------A 168
|...||..||.|| ||||| |.|.|.|||| | |||| |
BPUM_0867___y 182 AGAGACTCAATAAGCAAGT--CTATGAACAT-ATTAGAATATACTATACA 228
BSNT_01583 169 GAGTCATTCAAACAGGCCGATATTTATTACACTTCTAAGGAAAAGTCCTT 218
||| |||.|||.||.| |||.|| .|.|| ||.||
BPUM_0867___y 229 GAG------AAAGAGGACGCT-TTTGTT-GATTT-----GACAA------ 259
BSNT_01583 219 ACT----GCCATTGACGAAAG--AAACGCTTGAATATG-CA--GTCAGTA 259
| |||||.|| |.|| ||| |||.|.| || ||||||.
BPUM_0867___y 260 --TCGAGGCCATAGA--ACAGGCAAA-----GAAGAGGACAGCGTCAGTG 300
BSNT_01583 260 TTAATCAGATTATGATTGGATATTCGAATCAAAAGCCTATTGACATTATT 309
|| ||| |||.||||.| || |||| |||.|.|||||||||
BPUM_0867___y 301 TT--TCA-------ATTTGATACT-GA--CAAA--CCTTTAGACATTATT 336
BSNT_01583 310 TTTTTTCCTAATGAA-AAACAGATGGAGGCTTACTCCGGTTTATTGGATG 358
|.||||..|.||.|| ||||| ||.|||...|| |..|.||||.
BPUM_0867___y 337 TATTTTGATGATAAAGAAACA-ATTGAGCAATA-------TGCTGGGATC 378
BSNT_01583 359 TAG----TT---GGTTTTTATTCTGAACGGGAGCAGCTGATCGGATTGTT 401
.|| || ||||||||||||||.|..||.||..||||.||.||.|.
BPUM_0867___y 379 AAGCATATTACGGGTTTTTATTCTGATCATGATCAAATGATAGGGTTATA 428
BSNT_01583 402 GCCTGAAGAGAAAAA---GAA--ACTGTT--AGAAGGGGACGAGGTAGCG 444
.|| |||.||| ||| |.|.|| ||||.|.||| .|.
BPUM_0867___y 429 TCC-----AGATAAACGGGAAGCATTATTGAAGAAAGAGAC------ACT 467
BSNT_01583 445 G--TTTAT--TTGTACCAGAGATTGTTGATTCATGAATACTCGCACCATG 490
| ||||| ||.|.|.|.|..||.||||||||||||||..|.|||..||
BPUM_0867___y 468 GCCTTTATACTTTTTCAACACGTTATTGATTCATGAATATGCTCACTTTG 517
BSNT_01583 491 CGTTTCACCAGAAAT-TGAAGGAG------CTTGAGACGGATC-CCGATG 532
.|||| | ||||..|| |||..||.|..|| |||.||
BPUM_0867___y 518 -TTTTC--------TATGAAAAAGTTCATTCTTACGAAGTGTCTCCGGTG 558
BSNT_01583 533 AGTTTCC--GTTATGGTTTCATGAAGGGTTAAGC-GAGTGGATTGCGAAC 579
|..|||| .|| |||||.|||| ||||...||| ||.|||| ||..|
BPUM_0867___y 559 ATCTTCCCACTT-TGGTTCCATG-AGGGAACAGCAGAATGGA---CGGCC 603
BSNT_01583 580 TATGAATTGCTCATAGATCCGATCACGT-------TTTC--TGTCGTGCC 620
|||||..|| .||.||.| ||||| .||| .|||.|.||
BPUM_0867___y 604 TATGACGTG---TTAAATGC---CACGTCTGAACGGTTCGACGTCATTCC 647
BSNT_01583 621 CTTTGACC-GT---TTGCAGACTGATCGAGACTGGCAGGAAGCTAGAGCC 666
||| || || || ||..||||||.|||.|||||.||..|| |
BPUM_0867___y 648 CTT---CCAGTCTCTT-CATTCTGATCAAGATTGGCAAGACTCT-----C 688
BSNT_01583 667 GAA-----TATGACACTGATGTCTATTTGCAAAGCTTTTATATGATCGAT 711
|.| |||||.||.|||||.|||.|||||||||..|||||||||.||
BPUM_0867___y 689 GGATGACGTATGAGACAGATGTTTATGTGCAAAGCTACTATATGATCTAT 738
BSNT_01583 712 GAGCTG----------ACGGACAAATACGGGAAAGATATTATTTCA-GAA 750
|||||| |||||| .||||||.| |.|| ||.
BPUM_0867___y 739 GAGCTGGTGCAGCTTTACGGAC----------GAGATATCA-TACACGAG 777
BSNT_01583 751 ATGATTAAGGAAACGGCAAAAAAAGGGGACTTTGAAAAAGGGTTTAAATC 800
||.||..||||||||||.||||.|||....||||..|||||.|||.|| |
BPUM_0867___y 778 ATTATGCAGGAAACGGCGAAAACAGGTCTATTTGCTAAAGGCTTTGAA-C 826
BSNT_01583 801 A-GCAACAAAGGAATGTCTTGATCAATTTGAAAAAGATTTTAAGAAAAAA 849
| ||.|||..|.||.|.||.|...|.||||||.|..|||||.|.||.|.|
BPUM_0867___y 827 AGGCGACAGGGCAACGGCTCGCAGATTTTGAAGATTATTTTCACAAGATA 876
BSNT_01583 850 TTTGAAA-AAAACAGTGCGGCATTGGATAGTATCTATCCAATGCCTTTGT 898
|.|.||| ||||.| |||| ||.
BPUM_0867___y 877 TATCAAAGAAAAAA---CGGC--TGA------------------------ 897
BSNT_01583 899 TATTAGTGAAGTCCTTGCTGACCCATTCCGCCATTCCGACTTGTGTCGGA 948
BPUM_0867___y 897 -------------------------------------------------- 897
BSNT_01583 949 GGCATTTGTCCTTGGGCAGGGGCGAATGAATTTCGCAGCTGTTCCATATC 998
BPUM_0867___y 897 -------------------------------------------------- 897
BSNT_01583 999 CTGCGCATCAAGCTGA 1014
BPUM_0867___y 897 ---------------- 897
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