Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03893 and BPUM_0842
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03893___yrpD.1.24716.seq
# -bsequence dna-align/BPUM_0842___yrpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03893___yrpD-BPUM_0842___yrpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03893___yrpD-BPUM_0842___yrpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03893___yrpD
# 2: BPUM_0842___yrpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 813
# Identity: 490/813 (60.3%)
# Similarity: 490/813 (60.3%)
# Gaps: 147/813 (18.1%)
# Score: 1273.5
#
#
#=======================================
BSNT_03893___ 1 -------------------ATGA------TAGGGGGAAATAATGATGATG 25
|||| ||||.||||| ||||| ||||
BPUM_0842___y 1 ATGATAACGTTTTCAAATAATGAATCCATTAGGAGGAAA-AATGA-GATG 48
BSNT_03893___ 26 AAAAAAGGT-CTGCTTGCGGGTGCGCTTA---CGGCAACCGTGCTTTT-- 69
||||||.| |||.|..|..||||..||| |.||.| ||||
BPUM_0842___y 49 -AAAAAGCTACTGATCACTAGTGCCATTAGCTCAGCTA------TTTTAT 91
BSNT_03893___ 70 ----GGCACATGTGCAGT-AGATGTGCCGGGTATTATTAGTC-CAAAAAC 113
||| .|| |.|||| || |||.||.||..|| || ||.|
BPUM_0842___y 92 TGGGGGC-GAT-TCCAGTCAG-TGTCCCAGGCCTT-----TCTCAGA--- 130
BSNT_03893___ 114 CGCAG----AAGCTGCATCACAGCTAACTGATGGAATCGGCGGGAGGGCT 159
||||| .||..|||.|.||..||.|..|.||.||||||||..|..||
BPUM_0842___y 131 CGCAGGAAATAGAAGCAGCGCAATTATCGAAAGGTATCGGCGGACGTACT 180
BSNT_03893___ 160 TACTTGAACAGTAATGGTGCCATTCTTGTTACGAAAATCCAGCTTCCTAG 209
||..|.||.||.|||||..||||..|.||.||.||.||.||.||.|||
BPUM_0842___y 181 TATATCAATAGCAATGGGTCCATATTGGTCACAAAGATTCAACTCCCT-- 228
BSNT_03893___ 210 CTC--CACTCAG-GTTTCAAATGGGACAGCCTACATCTACTCTGGTTTTA 256
|| ||.|.|| ||.||||||||||||||.||.||.||.|||||.||.|
BPUM_0842___y 229 -TCCGCAATGAGTGTATCAAATGGGACAGCTTATATTTATTCTGGATTCA 277
BSNT_03893___ 257 GCGGAGGCACA-GAATCCGATATTGGGCTTCAGTACAGTGATAAATATAA 305
|.|.|.||.| |||.|.||||||||.|||||.||||||...|.||||||
BPUM_0842___y 278 -CAGGGTCAAAGGAAGCGGATATTGGTCTTCAATACAGTTCAACATATAA 326
BSNT_03893___ 306 TGTATGGAAACCATA-TATGAAAGTTGGTTCAAA-AGGACAGGATCAGGT 353
|||.|||||||| || .||||||||.||..|||| | ||||
BPUM_0842___y 327 TGTGTGGAAACC-TACGATGAAAGTAGGAGCAAATA-------ATCA--- 365
BSNT_03893___ 354 TCAG-----TACCTCGAAGGAGGAAGCCAATTCACGAATACGAAAGGCTT 398
|| ||..||||||||..||...|.||.|||.||||.|||||.||
BPUM_0842___y 366 --AGAAACCTATATCGAAGGAAAAAATGATTTTACGTATACAAAAGGGTT 413
BSNT_03893___ 399 CCGTCCCGGCAGCACCGTACAACTTACCATCTACAAAAACCTTAACGGCA 448
....||.||.||.|..||.|||.|.|||||.||.||||||.|.||.||..
BPUM_0842___y 414 TAAGCCTGGAAGTATTGTGCAAATGACCATTTATAAAAACTTGAATGGAC 463
BSNT_03893___ 449 ATACCCGCGCTACATACTGGGGCACGAACAATGCCGGATACAACGGCCGT 498
||||..|.||.||.|.||||||.||.||.||||..||.||.|..||.|||
BPUM_0842___y 464 ATACAAGAGCAACGTTCTGGGGGACAAATAATGTTGGTTATACTGGGCGT 513
BSNT_03893___ 499 CTCATTTCAGAAATCAGCAAAA--CAAATGTCGGCTCCATCTCCAAATGG 546
.|.||..|.|||||| ||||| |.||..|.||.||..|..|.||.|||
BPUM_0842___y 514 ATTATCACGGAAATC--CAAAACTCTAACATTGGTTCTGTGACGAAGTGG 561
BSNT_03893___ 547 AAAGCGCTTGCT----ACAGTTGCTACAACAGGTTCACGCCA-ATCTATC 591
||| ||.|| |||||.|| |..|..|.||| | |||||||
BPUM_0842___y 562 AAA----TTACTGTCGACAGTAGC----AGTGACTGACG--ATATCTATC 601
BSNT_03893___ 592 --AAA---------TCAAATTTTTCAACATC-TTTTACAAACATCACCAT 629
||| .|.||.||.||.|| || ||||||..|||||||..|
BPUM_0842___y 602 GGAAAGATATTCGTGCGAACTTCTCTAC-TCGTTTTACTGACATCACATT 650
BSNT_03893___ 630 CGACAACAAAGCAATAACACCTGTAATTGATACACAAGACTT------CG 673
.||||.....||..|.||||||||.||||||||.|||||||| |.
BPUM_0842___y 651 AGACAGTCGTGCCGTCACACCTGTGATTGATACGCAAGACTTTACGTCCA 700
BSNT_03893___ 674 CTAAAGTAACAGTCTCAGGCAACAGTGTCAGTTTAT---CCGTTGTGAAA 720
.|.||||| |||||.||.| ||||..|| |.|.|||.|||
BPUM_0842___y 701 TTCAAGTA------TCAGGGAATA----CAGTAAATATGCAGGTGTTAAA 740
BSNT_03893___ 721 -------AATTAA 726
||||||
BPUM_0842___y 741 AACAACGAATTAA 753
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