Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01241 and BPUM_0839
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_01241___yfnI.1.24716.seq
# -bsequence dna-align/BPUM_0839___yfnI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01241___yfnI-BPUM_0839___yfnI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01241___yfnI-BPUM_0839___yfnI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01241___yfnI
# 2: BPUM_0839___yfnI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2035
# Identity: 1406/2035 (69.1%)
# Similarity: 1406/2035 (69.1%)
# Gaps: 167/2035 ( 8.2%)
# Score: 4693.0
#
#
#=======================================
BSNT_01241___ 1 ATGAATGAAGAACTTAAAGTGTTTAAGAAAGTAGAGGTTGCCATGAAGAA 50
|||||.||
BPUM_0839___y 1 ------------------------------------------ATGAAAAA 8
BSNT_01241___ 51 ACTTTTTTCTTACAAACTTAGCTTTTTTGTGCTGGCTGTTATACTGTTTT 100
|.|.|||.|..|||||..||||||||||||..|||||||..|..|.||||
BPUM_0839___y 9 AATATTTGCGAACAAATATAGCTTTTTTGTATTGGCTGTCCTTTTATTTT 58
BSNT_01241___ 101 GGGCAAAAACGTATTTATCCTACAAGACTGAGTTTAATCTTGGGGTAAAA 150
||||.|||.|||||..|.|||||||.|..||.||||||.|.||.||.|||
BPUM_0839___y 59 GGGCGAAATCGTATGCAGCCTACAAAATGGACTTTAATTTAGGAGTGAAA 108
BSNT_01241___ 151 GGCACAACTCAGGAGATCCTCCTGATATTTAACCCATT---CTCAAGCGC 197
||..|...|||.|||...||.||..||||.||.||||| .||| ||
BPUM_0839___y 109 GGTTCTTTTCAAGAGGGTCTTCTTTTATTAAATCCATTTAGTTCA---GC 155
BSNT_01241___ 198 CGTCTTCTTTTTAGGACTGGCT---TTGCTGGCGAAAGGG-CGTAAATCA 243
|.|..|.|||||.||||||||| ||..|| ||||| ||||||||.
BPUM_0839___y 156 CATTGTGTTTTTGGGACTGGCTCTCTTTTTG----AAGGGTCGTAAATCT 201
BSNT_01241___ 244 GCCATTATT---ATGCTGATTATCGA-TTTCTTGATGA---CATTTGTGT 286
||||||.|| ||..||||| || |||.|| |||| ||.|| |
BPUM_0839___y 202 GCCATTGTTTTAATTGTGATT---GACTTTATT-ATGACCGCACTT---T 244
BSNT_01241___ 287 TATATGCAAATATTTTATTCTATCGTTTCTTTGACGATTTCTTGACGTTC 336
|||||||.|||.|....|.|||.|||||||||||.||.||.|||||.|||
BPUM_0839___y 245 TATATGCGAATGTAGCGTACTACCGTTTCTTTGATGACTTTTTGACTTTC 294
BSNT_01241___ 337 CCGAACATTAAACAGTCCGGAAACGTTGGAAACATGGGAGACGGGA---- 382
.|.|..||.||.||..|.||.||..||||| ||||.|..||
BPUM_0839___y 295 TCTACAATGAAGCAAGCAGGCAATCTTGGA------GGAGGCATGACTGG 338
BSNT_01241___ 383 -------TTTTC-AGTATCATGGCCGGTCATGATATTTTCTATTTCTTAG 424
||.|| |||||.|.|.| .|||||..||||.||.|||.|.|
BPUM_0839___y 339 CGGTGTGTTATCTAGTATTAAGCC---ACATGACCTTTTGTACTTCCTTG 385
BSNT_01241___ 425 ATATTATCATTTTGATTGCGGTATTGATCTGGAGACCTGAATTAAAAGAA 474
|||||||.||.|||||||||.|..|||||||||||||.|||.|.||..||
BPUM_0839___y 386 ATATTATTATCTTGATTGCGATTGTGATCTGGAGACCAGAAGTGAAGAAA 435
BSNT_01241___ 475 TACAAAATGAAAAA-ACGCTTTGCGTCTTTAGTGATCCT---TTCTGGGA 520
|.|.|||||||||| || .||||| .||.| ||||..| |.|.||..
BPUM_0839___y 436 TTCCAAATGAAAAAGAC-ATTTGC-ACTGT--TGATTGTGGCTGCAGGTG 481
BSNT_01241___ 521 TCGCACTGTTTTTCATCAACCTGCACTATGCGGAAAAAGACCGTCCGCAG 570
|.|.|||.||.||..|.|||||.||.|..||.|||||.||.|||||..|.
BPUM_0839___y 482 TAGGACTATTCTTTGTAAACCTTCATTTAGCTGAAAAGGATCGTCCAGAA 531
BSNT_01241___ 571 CTGCTGACAAGAACGTTTGACCGCAATTATATCGTGAAGTATTTAGGTCT 620
.|..|.||||||||.|||||.|..||.|||.|.||.||.|||||||||.|
BPUM_0839___y 532 TTATTAACAAGAACATTTGATCATAAGTATGTTGTCAAATATTTAGGTGT 581
BSNT_01241___ 621 GTACAACTACACCATTTATGACGGTGTGCAGACGGCTCAAACAGAAACGC 670
.||.||.||.||.|||||||||||.||.||..|.||.||||..|.|||.|
BPUM_0839___y 582 TTATAATTATACGATTTATGACGGAGTACAATCTGCACAAAATGCAACAC 631
BSNT_01241___ 671 AACGG--GCCTATGCAAGCAGCGATGATTTAACAAGCGTCGAGAATTACA 718
| || ||..||||.|||||.||.||||||||....||.|..||.||.|
BPUM_0839___y 632 A--GGTAGCAAATGCGAGCAGTGAAGATTTAACGGATGTTGTCAACTATA 679
BSNT_01241___ 719 CGACGTCTCATTATGCGAAACCAAACGCCGAGTACTTCGGCTCTGCCAAA 768
|..|.|||||.|||||||||||||||||.|||||||||||....||.|||
BPUM_0839___y 680 CAGCTTCTCACTATGCGAAACCAAACGCAGAGTACTTCGGTAAAGCTAAA 729
BSNT_01241___ 769 GGCAAAAATATCATTAAAATTCACCTCGAAAGCTTCCAGTCATTCCTGAT 818
||.||.||.||.||||||||.||..|.||||||||||||||.|||.|.||
BPUM_0839___y 730 GGGAAGAACATTATTAAAATCCATTTAGAAAGCTTCCAGTCTTTCTTAAT 779
BSNT_01241___ 819 TGACTACAAGCTAAACGGTGAAGAGGTGACGCCTTTCTTAAATAAACTTG 868
|||||||||.|||||.||.|||||.|||||.||.||.|||||.||.||.|
BPUM_0839___y 780 TGACTACAAACTAAATGGAGAAGAAGTGACACCGTTTTTAAACAAGCTGG 829
BSNT_01241___ 869 CGCACGGCGGGGAAGATG---TGACGTATTTTGATAACTTCTTCCATCAG 915
|.|| .|||.||||.| |.||||||||.||||||||||||||||||
BPUM_0839___y 830 CTCA---TGGGAAAGAGGACTTTACGTATTTCGATAACTTCTTCCATCAG 876
BSNT_01241___ 916 ACAGGCCAGGGAAAAACATCTGATGCCGAGCTGACAATGGATAACTCG-A 964
|||||.||.|||||.|||.|||||||.|||||||..|||||||| |.| |
BPUM_0839___y 877 ACAGGTCAAGGAAAGACAGCTGATGCTGAGCTGATGATGGATAA-TAGTA 925
BSNT_01241___ 965 TCTTCGGTCTT-CCTGAAGGCTCCGCGTTTGTGACGAAAGGCGAAAACAC 1013
|.||||| ||| ||.||.||..|.|||||||||||.|||||.|||||.||
BPUM_0839___y 926 TGTTCGG-CTTGCCAGAGGGAGCAGCGTTTGTGACAAAAGGTGAAAATAC 974
BSNT_01241___ 1014 TTACCAATCGCTTCCTGCGATTTTAGACCAGAAGGAAGGCTATACAAGCG 1063
|||||||||.||.|||||.||..||||.||.||.|.|||||||||.||||
BPUM_0839___y 975 TTACCAATCACTCCCTGCCATCCTAGATCAAAAAGCAGGCTATACGAGCG 1024
BSNT_01241___ 1064 CCGTCCTGCATGGTGATTACAAATCGTTCTGGAACCGTGACCAGATTTAC 1113
|.||.||.||.||.||.||.|||||.|||||||||||||||..||||||.
BPUM_0839___y 1025 CAGTGCTTCACGGAGACTATAAATCTTTCTGGAACCGTGACACGATTTAT 1074
BSNT_01241___ 1114 AAACATATCGGATACGA-CAAGTTCTTTGACGCAAGTAC---GTACGATA 1159
||.|||||.|||||.|| ||| ||||||||.|| |.| .|||.|.|
BPUM_0839___y 1075 AAGCATATGGGATATGATCAA-TTCTTTGATGC---TTCCTATTACAACA 1120
BSNT_01241___ 1160 TGTCGGATGAAAATGTGATTAACATGGGGCTTAAGGATAAGCCGTTCTTT 1209
||...||.||||||.|..|.||.|||||.||.||||||||.||.|||||.
BPUM_0839___y 1121 TGGATGAAGAAAATCTTGTGAATATGGGTCTGAAGGATAAACCATTCTTC 1170
BSNT_01241___ 1210 ACAGAATCGATTTCAAAGCTTGAATCTCTTAAACAGCCGTTTTATGCGCA 1259
|.||||||.|||.|.|.|||.|||||..|.|||.|.||.||||||||.||
BPUM_0839___y 1171 AAAGAATCAATTCCGATGCTAGAATCAATGAAAAAACCATTTTATGCACA 1220
BSNT_01241___ 1260 TTTGATTACATTGACAAACCATTATCCGTTTAACCTTGATGAAAAAGACG 1309
|||.||.||||||||.|||||.|||||.|||||..|.|||||||||||.|
BPUM_0839___y 1221 TTTAATGACATTGACTAACCACTATCCATTTAATTTAGATGAAAAAGATG 1270
BSNT_01241___ 1310 CGTCTCTTAAAAAAGCGACAACAGGCGATAACACAGTTGACAGCTACTTC 1359
||.|..||...||.||.|||||.||.||.||.|||||.||.|.|||||||
BPUM_0839___y 1271 CGACGATTGCTAAGGCAACAACTGGTGACAAAACAGTAGATAACTACTTC 1320
BSNT_01241___ 1360 CAGACAGCGCGTTACCTTGACGAAGCGCTTGAGCAATTCTTCAAGGAGCT 1409
||.|||||..|.||.||.||.|||.|..|.|||||||||||.||.||..|
BPUM_0839___y 1321 CAAACAGCAAGATATCTAGATGAATCATTAGAGCAATTCTTTAAAGACTT 1370
BSNT_01241___ 1410 GAAGGAAG-CCGGCCTGTATGACAACTCAGTCATCATGATT-TACGGTGA 1457
||| .||| |.||..|||||.|..||||.||||| .|.||| ||.|||||
BPUM_0839___y 1371 GAA-AAAGTCAGGTATGTATAAAGACTCTGTCAT-TTTATTATATGGTGA 1418
BSNT_01241___ 1458 CCATAACGGTATTTCTGAAAACCATAACCGAGCGATGAAAGAGATTCTTG 1507
||||||.|||||||||||||||||||||||.||.||||..|||||||..|
BPUM_0839___y 1419 CCATAATGGTATTTCTGAAAACCATAACCGTGCAATGAGCGAGATTCAAG 1468
BSNT_01241___ 1508 GAAAAGAGATCACAGATTATCAAAACGCACAGAACCAGCGTGTGCCGCTG 1557
|.|||||.||.|||..|||||||||.|||||.|||||||||||.||.||.
BPUM_0839___y 1469 GGAAAGAAATTACACCTTATCAAAATGCACAAAACCAGCGTGTACCACTC 1518
BSNT_01241___ 1558 ATGATCCGCGTTCCTGGCAAAAAAGGCGGAGTGAACCATACGTATGGCGG 1607
|||||.||..|||||||||||.|.|||||.|||||||||||||||||.||
BPUM_0839___y 1519 ATGATTCGTATTCCTGGCAAACAGGGCGGCGTGAACCATACGTATGGTGG 1568
BSNT_01241___ 1608 CGAAATTGACGTTATGCCGACACTTCTGCACTTAGAAGGAATTGATTCTC 1657
.|||.|.||.||.|||||.||.|||||.||||||.||||.||||||||
BPUM_0839___y 1569 TGAAGTAGATGTGATGCCTACGCTTCTTCACTTACAAGGTATTGATTC-- 1616
BSNT_01241___ 1658 AGAAA----TACATCAACTTTGGTACTGATTTATTCTCTAAAGACCACGA 1703
||| ||..|.||.|||||.||.|||.||||||||||..|.||.||
BPUM_0839___y 1617 --AAATGAGTATGTGAATTTTGGAACAGATCTATTCTCTAAGAAGCATGA 1664
BSNT_01241___ 1704 CGATACAGTGGCATTCAGAAACGGAGACTTCGTAACGCCGAAGTACACAT 1753
..|.||.||.||||||.|.||||||.|||..||.||.||.||.||.|||.
BPUM_0839___y 1665 TCAAACTGTTGCATTCCGTAACGGAAACTATGTGACACCAAAATATACAC 1714
BSNT_01241___ 1754 CAGTCGACAATATCATTTACGATACGAAGACAGGTGAAAAACTGAAAGCG 1803
..||.||.||.|...|.||||||||.||.||||||.||....|||||...
BPUM_0839___y 1715 TTGTAGATAACACTGTCTACGATACAAAAACAGGTAAAGTTGTGAAACAA 1764
BSNT_01241___ 1804 AATGAAGAAACGAAGAATC--TGAAAACAAGAGTGAACCAGCAGCTGAGC 1851
|||.||.|.|| |||..| |.|||.|..|.||..|..|.|||.|.|||
BPUM_0839___y 1765 AATAAAAAGAC--AGAGGCGATTAAAGCCCGTGTCGATAATCAGTTAAGC 1812
BSNT_01241___ 1852 CTTTCAGACAGTGTCCTGTACAAAGA-CTTGCTGAGGTTCCATAAACTAA 1900
||||||||.|..||.||.||.|..|| ||| ||..|.||||||||.||..
BPUM_0839___y 1813 CTTTCAGATAAAGTGCTTTATAGGGATCTT-CTTCGATTCCATAAGCTGT 1861
BSNT_01241___ 1901 ATGA-TTTCAAAGCC-GTTGATCCGTCAGACTATCATTACGGCAAGGAAA 1948
.||| ||| ||||| ||..||||.||.||.|||...||.||.||...||
BPUM_0839___y 1862 CTGACTTT--AAGCCAGTGAATCCATCTGATTATTTCTATGGTAAATCAA 1909
BSNT_01241___ 1949 AAGAAATCAAATAA--------------------- 1962
|||| .|||.||
BPUM_0839___y 1910 AAGA---TAAAGAAGAGGATTCTTCTGCTAAGTAA 1941
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