Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01446 and BPUM_0827
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_01446___perR.1.24716.seq
# -bsequence dna-align/BPUM_0827___perR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01446___perR-BPUM_0827___perR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01446___perR-BPUM_0827___perR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01446___perR
# 2: BPUM_0827___perR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity: 352/439 (80.2%)
# Similarity: 352/439 (80.2%)
# Gaps: 2/439 ( 0.5%)
# Score: 1400.0
#
#
#=======================================
BSNT_01446___ 1 ATGGCTGCACATGAACTAAAAGAAGCCTTAGAAACGTTGAAGGAAACCGG 50
||||||||.||.|||||||||||.||.|||||..|.||.||.||||||||
BPUM_0827___p 1 ATGGCTGCTCACGAACTAAAAGACGCTTTAGATGCTTTAAAAGAAACCGG 50
BSNT_01446___ 51 AGTTCGCATTACTCCTCAACGTCATGCGATTCTGGAATATCTCGTTAACT 100
.|||||.||||||||.||.||.|||||.||..||||.|.||||||.||.|
BPUM_0827___p 51 TGTTCGAATTACTCCGCAGCGCCATGCCATCTTGGAGTTTCTCGTAAATT 100
BSNT_01446___ 101 CTATGGCTCATCCAACAGCGGACGATATATATAAAGCTCTGGAAGGGAAA 150
|||||.||||.|||||.||||||||||||||||||||.||.|||||.|||
BPUM_0827___p 101 CTATGACTCACCCAACCGCGGACGATATATATAAAGCACTTGAAGGTAAA 150
BSNT_01446___ 151 TTTCCTAACATGAGCGTAGCGACAGTATATAACAATTTGCGTGTGTTCCG 200
|||||.||.|||||.||.||.||.||.||.||||||||.||.||.|||||
BPUM_0827___p 151 TTTCCAAATATGAGTGTCGCAACGGTTTACAACAATTTACGAGTCTTCCG 200
BSNT_01446___ 201 GGAATCAGGTTTGGTAAAAGAGCTCACATACGGTGATGCTTCCAGCAGAT 250
||||||.||.||.|||||.||..|.||.|||||||||.|.||.|||.|||
BPUM_0827___p 201 GGAATCTGGATTAGTAAAGGAATTAACGTACGGTGATTCCTCAAGCCGAT 250
BSNT_01446___ 251 TCGATTTTGTGACATCTGATCACTATCACGCGATTTGCGAAAACTGCGGT 300
|.|||||||.||||||.||.||.||.||.||||||||.|||||||||||.
BPUM_0827___p 251 TTGATTTTGCGACATCCGACCATTACCATGCGATTTGTGAAAACTGCGGA 300
BSNT_01446___ 301 AAAATTGTGGACTTCCACTACCCGGGCCTTGATGAAGTGGAACAGCTCGC 350
|||||.||||||||.||.||.||.|||||||||||||||||||||||.||
BPUM_0827___p 301 AAAATAGTGGACTTTCATTATCCTGGCCTTGATGAAGTGGAACAGCTTGC 350
BSNT_01446___ 351 TGCCCACGTCACAGGCTTCAAGGTAAGCCACCACCGTTTAGAAATTTACG 400
..||||.||.||.|||||.||.||.||.||.||.||.||.||.||.||.|
BPUM_0827___p 351 ATCCCATGTGACGGGCTTTAAAGTTAGTCATCATCGCTTGGAGATCTATG 400
BSNT_01446___ 401 GCGTC-TGCCAAGAGTGTTCGAAAAAAGAAAATCATTAA 438
| |.| ||.|||||.|||.||||||||||||||||||||
BPUM_0827___p 401 G-GACTTGTCAAGAATGTGCGAAAAAAGAAAATCATTAA 438
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