Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01443 and BPUM_0824
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_01443___ygaE.1.24716.seq
# -bsequence dna-align/BPUM_0824___ygaE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01443___ygaE-BPUM_0824___ygaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01443___ygaE-BPUM_0824___ygaE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01443___ygaE
# 2: BPUM_0824___ygaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1109
# Identity: 765/1109 (69.0%)
# Similarity: 765/1109 (69.0%)
# Gaps: 82/1109 ( 7.4%)
# Score: 2493.5
#
#
#=======================================
BSNT_01443___ 1 ATGAAACTTGGTGCCCGCATTTTCAAAACCGGGATTGCGATTACACTTGC 50
|||||||||||.|||||.|||||.|||||.||.|||||.|||..|||.||
BPUM_0824___y 1 ATGAAACTTGGAGCCCGTATTTTAAAAACTGGTATTGCCATTGTACTCGC 50
BSNT_01443___ 51 CCTTTATTTGGCTTCGTGGATCGGGCTTCCCGCGCCGATTTTCGCTGGAA 100
.|||||..||||..|.|||.|.|||.|.||..|.||..|.|||||.||.|
BPUM_0824___y 51 GCTTTACCTGGCAACATGGCTTGGGTTGCCAACACCCGTCTTCGCGGGGA 100
BSNT_01443___ 101 TTGCAGCGATATTTGCGATCCAGCCGTCGATTTACCGCTCTTTTCTCATT 150
|||||||..|||||||.||||||||.||.|||||.||.||||||.|.|..
BPUM_0824___y 101 TTGCAGCTGTATTTGCTATCCAGCCATCTATTTATCGATCTTTTTTAACG 150
BSNT_01443___ 151 ATTATTGACCAGGTTCAAGCAAATATCATCGGAGCTGTGATTGCCACAGT 200
|||.||||.||.||.|||||.|||||.||.|||||.|...||||||....
BPUM_0824___y 151 ATTGTTGATCAAGTGCAAGCCAATATTATTGGAGCAGCACTTGCCATTAC 200
BSNT_01443___ 201 GTTCGGCCTTATTTTCGG-AC----CCAGCCCGATTATGATCGGGTTAAC 245
|||||||||..||||.|| || |||| |.||.|||||.|||||
BPUM_0824___y 201 GTTCGGCCTGCTTTTTGGCACTGGACCAG-----TCATTATCGGTTTAAC 245
BSNT_01443___ 246 AGCAGTTATTGTCATTACAATCATGCTGAAACTTAAAATTGAACATACAA 295
.||.||.||.||||||.|.||.|...|.||.||.||.||||||||.||.|
BPUM_0824___y 246 CGCCGTCATGGTCATTGCCATTAATTTAAAGCTGAAGATTGAACACACGA 295
BSNT_01443___ 296 TTTCAATTGCTCTTGTAACAGTTATTGCGATATTAGAATCCGCCGGTGAC 345
||.|||||||.||||||||.||.||||||||.||||||...||.||.||.
BPUM_0824___y 296 TTCCAATTGCACTTGTAACCGTCATTGCGATTTTAGAAAGTGCAGGGGAT 345
BSNT_01443___ 346 GA---------CTTT---TTAATGTTCGCGCTGATCAGAACAAGC-ACAG 382
.| |||| ||||| || |||| ||| ||.|
BPUM_0824___y 346 CATTTCCTTTCCTTTGCCTTAAT-----------TC-GAAC-AGCTACTG 382
BSNT_01443___ 383 TCATCTTAGGGGTGCTTTCTTCCTTTATCGTCAACCTTGTGTTTTTGCCT 432
|..|.|||||.||.|||||.||.|||.|.||.||..|..|.||..||||.
BPUM_0824___y 383 TGGTGTTAGGAGTTCTTTCATCATTTTTAGTAAATTTAATCTTCCTGCCG 432
BSNT_01443___ 433 CCTAAGTACGAAACAAAGCTGATTCATAATACCGTCGAAAACACCGAAGA 482
||.|||||.|||||||||||..|||||.|.|...|.|||||.||.||.||
BPUM_0824___y 433 CCAAAGTATGAAACAAAGCTTGTTCATCACATTATGGAAAATACGGAGGA 482
BSNT_01443___ 483 AATTATGAAGTGGATCAGATTG---TCCATGCGGCAGTCGACAGAGCATT 529
.|||.|.||.|||||..||.|| |||| |.|||||.||.||.||||
BPUM_0824___y 483 GATTTTAAAATGGATTCGACTGAGCTCCA---GACAGTCTACTGATCATT 529
BSNT_01443___ 530 CGATTTTGAAAGAGGATATTGAAAAACTGAAAGAAAAAATGATCAAGCTT 579
|.|.|||.||.||.||.||.||..||.|.||||||...||||||||..|.
BPUM_0824___y 530 CCACTTTAAAGGATGACATCGATCAAATAAAAGAACGCATGATCAAATTA 579
BSNT_01443___ 580 GATCAGACATAT-CTT-CTATATAAAGAAGAAAGAAGTTACTTTAAGAAA 627
|||| ||||.| ||| .||||.|||||||||.||||.||.||.||||||
BPUM_0824___y 580 GATC--ACATTTACTTGTTATACAAAGAAGAACGAAGCTATTTAAAGAAA 627
BSNT_01443___ 628 ACGACTTATGTGAAATCAAGAAAGCTTGTCCTGTTCAGACAGGCCATTAT 677
||.||.|||||.||||||||||||||.||..|||||||||||||||||||
BPUM_0824___y 628 ACAACCTATGTAAAATCAAGAAAGCTCGTTTTGTTCAGACAGGCCATTAT 677
BSNT_01443___ 678 TACTGCAAATCGGGCGCTTGATACAT--TGAAGAAGCTGCATCGTCTGGA 725
..|..|.|||||.||.||| |||.| ||||.|||||.|||....|.||
BPUM_0824___y 678 GGCATCGAATCGCGCTCTT--TACTTGCTGAAAAAGCTTCATAAATTAGA 725
BSNT_01443___ 726 AAACGAGATCTATCA---TATGCCGGAAGAG--TTTCA-GGAAACACTGA 769
|||.||.|| ||| .||||| |||| ||||| |||||...|.|
BPUM_0824___y 726 AAATGAAAT---TCACTTGATGCC---AGAGCATTTCAGGGAAAGCTTAA 769
BSNT_01443___ 770 CTGAAGAACTTGATTACCTGCTTTACTGGCACGAACGGATTTTGATGAGG 819
|.||.|||.||||||||.|.||.||.|||||.||.||.|..|||||||..
BPUM_0824___y 770 CAGATGAAATTGATTACTTACTGTATTGGCATGAGCGCACCTTGATGAAA 819
BSNT_01443___ 820 TTTGTCGGAAAAATCAAGCCGCATGATGACGCGGTTGAAGAAGGCATCCA 869
||.|||||.|||||.||.|||||.|||||.|...||.|| ||.|.||.|.
BPUM_0824___y 820 TTCGTCGGTAAAATGAAACCGCAGGATGATGAATTTCAA-AATGAATGCT 868
BSNT_01443___ 870 GTATAAGCAGCTT------TTAACAAAGTCATTTTTAAAAAATCAGCAAA 913
.|.|..|| ||| |||||.||.||.|||.|..|..|||||||||
BPUM_0824___y 869 CTCTTCGC--CTTGAAACGTTAACGAAATCTTTTATCCAGCATCAGCAAA 916
BSNT_01443___ 914 ATACGGATGAGGAGCTT-ATTGATTACAACATGCTCAATATTATGGCAAG 962
|....||..|.|| ||| .|.||||||||.|||||.|||.|||||.|.||
BPUM_0824___y 917 ACCAAGAAAATGA-CTTGCTCGATTACAATATGCTAAATGTTATGTCCAG 965
BSNT_01443___ 963 CGCCGTGGAATATCGCGAGCAGCTTGAACATTTAGAAACACTTATCACAA 1012
|..|.|.|||||.||.||..|.||.||.||||||||.|||.|.||.||||
BPUM_0824___y 966 CATCATCGAATACCGTGATGAACTAGAGCATTTAGATACATTGATTACAA 1015
BSNT_01443___ 1013 GTTTTCAAACGTATCATCCGAAAGACTGCGAAATAGAAACAGAAGAGTAA 1062
|.||.||.||||||||.||.||||||.|.|||||.||.||||||||..||
BPUM_0824___y 1016 GCTTCCAGACGTATCACCCAAAAGACAGTGAAATTGAGACAGAAGAAAAA 1065
BSNT_01443___ 1062 --------- 1062
BPUM_0824___y 1066 GAAGCATAG 1074
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