Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01433 and BPUM_0809
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:01
# Commandline: needle
# -asequence dna-align/BSNT_01433___yfhP.1.24716.seq
# -bsequence dna-align/BPUM_0809___yfhP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01433___yfhP-BPUM_0809___yfhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01433___yfhP-BPUM_0809___yfhP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01433___yfhP
# 2: BPUM_0809___yfhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1036
# Identity: 724/1036 (69.9%)
# Similarity: 724/1036 (69.9%)
# Gaps: 107/1036 (10.3%)
# Score: 2424.0
#
#
#=======================================
BSNT_01433___ 1 ATGGATACGGGCACACATGTCGTTATGGGCATCGCACTGGGCGGTATTGC 50
.|||||||.||.||.|||||.||.||||||||..|.||.||.||..||||
BPUM_0809___y 1 TTGGATACTGGTACTCATGTAGTAATGGGCATTTCTCTTGGGGGACTTGC 50
BSNT_01433___ 51 GACGCTT-GATCCTGTTGTCGGATCAGATCCGGCA-ATGGCTCACGCTGT 98
||..|| |||||.|..|||.|..||||||| .|| |||||.||.||.||
BPUM_0809___y 51 -ACTTTTAGATCCAGCCGTCAGCGCAGATCC-ACACATGGCACATGCCGT 98
BSNT_01433___ 99 TATGATCGCAACGCTTGCGGGCTCTCAGGCTCCGGATATTGATACTGTGT 148
.||||||||.||..|.||.|||||.||.||.||.|||||||||||||||.
BPUM_0809___y 99 GATGATCGCGACCATCGCCGGCTCCCAAGCACCAGATATTGATACTGTGC 148
BSNT_01433___ 149 TAAAGCTTAAAAACAATGCTGTTTATATAAGGAATCACAGAGGATTTACC 198
||||.||.|||||.|||||.|||||||||||.||||||.||||||||||.
BPUM_0809___y 149 TAAAACTAAAAAATAATGCAGTTTATATAAGAAATCACCGAGGATTTACA 198
BSNT_01433___ 199 CATTCAATTCCCGCCGTTTTGTTTTGGTCTGTCATCATCCCGGCGATTCT 248
|||||.|||||.||.||..||||||||||..|..|.||.|||| ||
BPUM_0809___y 199 CATTCCATTCCAGCTGTACTGTTTTGGTCATTGCTAATTCCGG-----CT 243
BSNT_01433___ 249 GT-ATTTATTTTATCCTCA-----------GGCCGATTTTCTGCACCTGT 286
|| |||| ||| || |||.|||||.||.|||||.|
BPUM_0809___y 244 GTGATTT------TCC-CATTCGTGCCGGGGGCAGATTTACTTCACCTTT 286
BSNT_01433___ 287 GGCTGTGGACACTGCTGGCAGTCGTTCTGCATGTCTTTGTTGATATATTC 336
||.|.||||||||..|.||.||.||.||.|||||.|||||.|||||||||
BPUM_0809___y 287 GGTTATGGACACTATTAGCCGTTGTGCTTCATGTGTTTGTCGATATATTC 336
BSNT_01433___ 337 AACGCCTATGGAACACAAGCCATTCGTCCGTTTTCGAAAAAATGGGTTGC 386
||.||.||.||.||.||.||.||||||||.||||||||.||.|||||.||
BPUM_0809___y 337 AATGCATACGGTACGCAGGCAATTCGTCCATTTTCGAAGAAGTGGGTAGC 386
BSNT_01433___ 387 GCTCGGGCTGATTAATACGTTTGATCCGTTTATTTTTATCAGCCATCTGG 436
|||.|||.|.|||||.|||||.|||||.||.||.|||.|.|..||.||
BPUM_0809___y 387 GCTTGGGATCATTAACACGTTCGATCCATTCATCTTTTTTACACACCT-- 434
BSNT_01433___ 437 CAGCTATCGCGATT-TGGTATGCAGGCG------GGA-GTCCCGGC-ATC 477
|.||||.||| |.||.|| |||| ||| .|||.||| ||
BPUM_0809___y 435 ----TGTCGCCATTGTCGTTTG--GGCGATTGGCGGACATCCTGGCTAT- 477
BSNT_01433___ 478 ACGTTTCTCA-GCT-TAT--------------ATATCATATTGGCAGGCT 511
||||||.|.| ||| ||| .|||.||||.|.||||
BPUM_0809___y 478 ACGTTTATTACGCTGTATGCCGTGATTTTCTGTTATTATATCGTCAGG-- 525
BSNT_01433___ 512 ACTACTTGGTGCGCCTGATCATGCAGCTGAGAATTAAACGGAAGCTTCAT 561
.||||.||||||||...|||||||||..||||.|.|
BPUM_0809___y 526 --------------GTGATTATGCAGCTTCAAATTAAACGTCAGCTGCGT 561
BSNT_01433___ 562 GAGATGATTCATGATGAGATCGAAAGCATTATTATTTCTCCAACGATGAA 611
| .|.|||| ||||||.||.|||..||||||||||||.||.||||||||
BPUM_0809___y 562 G-CACGATT--TGATGAAATTGAAGACATTATTATTTCGCCTACGATGAA 608
BSNT_01433___ 612 ATTCAGGCAATGGCGAATCGCAGTGACGACAGCACATGCT--TTCTATGT 659
.|||||.||||||||.||.||.|||| |..|.|.||.|| |||.||||
BPUM_0809___y 609 GTTCAGACAATGGCGCATTGCCGTGA--AATGTAAATCCTCCTTCCATGT 656
BSNT_01433___ 660 AGGAAGAAGCATGGAAGGACATGTCGTGATTCTGGATACATTTAATCGGG 709
.|||.|.||.|||.|.||..|..||.|.|||.|.||.||.|||||.||||
BPUM_0809___y 657 TGGACGCAGTATGAATGGTGAGATCATCATTTTAGACACCTTTAACCGGG 706
BSNT_01433___ 710 TGCCTGTTCCTGAAACCGATGTAATGCA---TGCGGCAAAGCAGGATGAT 756
||||.||.|||||.||.||..|.|||.| ||| |||| ||.||.||.
BPUM_0809___y 707 TGCCGGTCCCTGACACAGAAATTATGAAAATTGC--CAAA-CAAGACGAA 753
BSNT_01433___ 757 AACATCGCGGCGTTTCTGTCCTTTTCTCCGGTTTACCGGTGGGAAGTGGA 806
|||||..|.||.|||||.|||||.||.||.||.|||||||||||||||||
BPUM_0809___y 754 AACATTTCAGCCTTTCTCTCCTTCTCCCCTGTCTACCGGTGGGAAGTGGA 803
BSNT_01433___ 807 TACGTTTAAAGATCATTATGAGGTGAGATTTATCGACCTGCGTTATCGGA 856
||..|..||.||||||||||||||..|.|||||.||..||||.||.||.|
BPUM_0809___y 804 TAAATACAAGGATCATTATGAGGTACGGTTTATTGATTTGCGCTACCGCA 853
BSNT_01433___ 857 GCAAAGGCCATTATCCGTTTGTCGCAAT-TGTTCATATCGGCCAT-GATC 904
|||||||.||.|||||.||.|||||.|| || .|||||| |.||| ||||
BPUM_0809___y 854 GCAAAGGTCACTATCCTTTCGTCGCGATCTG-CCATATC-GACATGGATC 901
BSNT_01433___ 905 TCACGATCCGTTC-----GTCCTATACGGGATGGATATTCAGCGAAGAAA 949
|||...|| .||||||||.||.|||||.|||||.|||||||
BPUM_0809___y 902 -----ATCAAATCAAAAATTCCTATACCGGCTGGATTTTCAGTGAAGAAA 946
BSNT_01433___ 950 AACTTCAGAAAAAATTAAAGCTCGGCTCTATATAG- 984
||||.||.||||||||||..|||||||||.|.| |
BPUM_0809___y 947 AACTACAAAAAAAATTAAGACTCGGCTCTGTGT-GA 981
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