Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01432 and BPUM_0801
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:01
# Commandline: needle
# -asequence dna-align/BSNT_01432___yfhO.1.24716.seq
# -bsequence dna-align/BPUM_0801___yfhO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01432___yfhO-BPUM_0801___yfhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01432___yfhO-BPUM_0801___yfhO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01432___yfhO
# 2: BPUM_0801___yfhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2963
# Identity: 1651/2963 (55.7%)
# Similarity: 1651/2963 (55.7%)
# Gaps: 745/2963 (25.1%)
# Score: 4079.5
#
#
#=======================================
BSNT_01432___ 1 ---ATGAAAAGAAAA--CAT-ATCAT--GATCTATGCGGCCAGTTTGCTG 42
||||||.|.|.| .|| ||||| || ||
BPUM_0801___y 1 ATGATGAAACGTAGATGGATAATCATTGGA---AT--------------- 32
BSNT_01432___ 43 GTGTC-CGTTCTGGCA---------CACGCTTTTTTTGTGAAAGAATGGG 82
|||.| |.||||.||| |||.|.|||||..|..|.||||...
BPUM_0801___y 33 GTGCCTCATTCTTGCATTATTAGGCCACTCCTTTTTCTTATATGAATATA 82
BSNT_01432___ 83 CGGAAGGCAGGTATATGACAGGTCCGGGTGACGGGCTTGCGCAAATGATC 132
||.|||||.||||.||||||||....||.||||||.|..|.||||||.||
BPUM_0801___y 83 CGCAAGGCCGGTACATGACAGGAGATGGAGACGGGATCTCACAAATGCTC 132
BSNT_01432___ 133 GTATTTAAAAAATTATTATTTGACCAATAT-ACACACGGGAATTTTTTCT 181
...||||||||..|..|.|..||..||||| .|| |.||||||||.||
BPUM_0801___y 133 CCTTTTAAAAAGCTGCTTTACGATGAATATGTCA-AAGGGAATTTCTT-- 179
BSNT_01432___ 182 ACAATTATTC------ATTCGGACTTGGCGGCGGCACATTCAGTCAGCTC 225
|||||| ||||||.||.||||||||.||||.||..||..|.
BPUM_0801___y 180 ----TTATTCCTATCAATTCGGTCTAGGCGGCGGTACATACACGCAATTA 225
BSNT_01432___ 226 GGCTATTATTTTTCTGCGTC------TTTTCTTTT-----TCTTGCTGTA 264
||.||||||||..|..|||| ||||.|..| || |||||
BPUM_0801___y 226 GGGTATTATTTCACAACGTCGACGGTTTTTATGGTGACAGTC--GCTGT- 272
BSNT_01432___ 265 TCCGCC--GCTGTTTGGAT--GCTTCAAGCCGTCCAGCTGATCGGAGAAG 310
||.| |||| .||.|| ||||||...|.|.||| || |.
BPUM_0801___y 273 --CGTCTGGCTG-ATGAATACGCTTCATCTCATACAG----TC-----AA 310
BSNT_01432___ 311 CGGATACGCTTTTTTGGGC--------TGAGTCAGCTGTTTTTATCAGTA 352
||||||..|.|||.||||| |||.|..|||| |||.
BPUM_0801___y 311 CGGATATTCATTTCTGGGCAAATGCCGTGATTTGGCTG--------AGTG 352
BSNT_01432___ 353 TTTTTAAATTGA-GCTTGATCATCTTTACGTCCGCTT---CTGTTTTTCA 398
|..|.||..||| |||| || |||||.|.| ||||| .|||..|||.
BPUM_0801___y 353 TGATCAAGCTGACGCTT-AT--TCTTTTCAT-CGCTTACCGTGTGCTTCT 398
BSNT_01432___ 399 TTATCTTATTAAGCACAGGGCGGCATCGTTC------------------- 429
|| || ||.||||
BPUM_0801___y 399 TT-------------CA-------ATGGTTCAAAATAGACTAGGTGCCCT 428
BSNT_01432___ 430 -ACGGGAGCCGTGTTATACGGCGTCTCAATTATTTATTTCCGTCACGAAG 478
||.||.||||...|.||.||..|.||.|||.|.||||||||.||..||.
BPUM_0801___y 429 GACAGGTGCCGCAATTTATGGACTATCTATTGTATATTTCCGGCATCAAA 478
BSNT_01432___ 479 CGTATTGGGAATTTTTCACCGATACAATGGTTTGGCTTCCGCTGCTTGTG 528
|||.||||||||||||||||||.|..|||.|.|||||||||||.|||||.
BPUM_0801___y 479 CGTTTTGGGAATTTTTCACCGACAGCATGATGTGGCTTCCGCTACTTGTA 528
BSNT_01432___ 529 CTTGGCGCAGAAAAAATTATT--AGAGAGCGGCGT---CCGGCGTGGTTT 573
|||||.|..||....||| || |.|.|| || |||||.||||||
BPUM_0801___y 529 CTTGGGGTGGAGCGGATT-TTCAAAACAG----GTAAGCCGGCTTGGTTT 573
BSNT_01432___ 574 ATCG----TTGC-GTGTTCGCTGACGTTAATCAACAATTTTTACTTTGCA 618
||.| |||| || ||.|.|.|.||||||||||||||||||||.
BPUM_0801___y 574 ATTGCGGCTTGCAGT-----CTCATGCTGATCAACAATTTTTACTTTGCT 618
BSNT_01432___ 619 TACATAAACCTTATATTCATCGGAATCTATGTGCTGTTCAGATGGCTGAT 668
||.||..||.||||.||..|.|..||||||.|..|.|||||||...||||
BPUM_0801___y 619 TATATTCACTTTATCTTTTTAGCGATCTATCTTGTCTTCAGATATATGAT 668
BSNT_01432___ 669 -TAGTTTGGAACCACATGAAGAGAAAAGATGGATTCAAATCAGATTATTT 717
.||.|..||| .|||.|||....|.|||| ||.|..|||
BPUM_0801___y 669 CAAGCTGCGAA----GTGAGGAGCGCGGGTGGA--------AGGTGTTTT 706
BSNT_01432___ 718 -----CTCG---TTTCAGGCTTCA----TTTCTTTTGGCATCAGTGCGGC 755
||.| |.| ||.|| |.||.|||||.||.|||||.||
BPUM_0801___y 707 GGACCCTTGCGATCT----CTACACTGTTATCCTTTGGGATTAGTGCCGC 752
BSNT_01432___ 756 GGCGTTTGTGCCGGTAGTATACGGTTTTTTAAACAACCTGCGCCCTCCAT 805
....|||.|.|||...||.||.||.|||.|.|||||..|..|.||.||.|
BPUM_0801___y 753 CTTTTTTATCCCGTCTGTTTATGGCTTTCTTAACAATATAAGACCGCCGT 802
BSNT_01432___ 806 ACAGCCAGAAAATAGAGTGGCTCAATTTCGATGATAATATCTTATTTTCG 855
| .|||.| ||| ||| ||.|...||||
BPUM_0801___y 803 A-----TGAACA------GGC-----------GAT----TCCTTGGTTCG 826
BSNT_01432___ 856 AGCCGGATCATCATTGTGCCGGCCGCTTTTCTGCTGTTTTTGTTTATGAT 905
|||.|.||.|||| ||||||||||..|..||.|.|
BPUM_0801___y 827 AGCTGCATGATCA----------------TCTGCTGTTTACGAGTAGGGT 860
BSNT_01432___ 906 TTCTTT-TTACAAAAACCGTG-------TGTTTCGTCT------------ 935
.|.||| |||| |.||| ||.||.||||
BPUM_0801___y 861 GTATTTATTAC-----CTGTGATTTTTCTGATTTGTCTTTTTCTCGTACC 905
BSNT_01432___ 936 -CTTTGCCGG-----------------GTT------------GAGCCTGC 955
||||.|||| ||| .|.|||||
BPUM_0801___y 906 GCTTTACCGGAACAGATGGTTTTTCATGTTCACATCCATCAGTATCCTGC 955
BSNT_01432___ 956 TGTTTATTCTGTTTCATTTCAGTCCGTATGCGGCAAGCGTCTTTAACGGT 1005
|..||||| |||||.||.||.||..|...|||.||.||.|||||.|||
BPUM_0801___y 956 TCATTATT---TTTCACTTTAGCCCAAAGATGGCGAGTGTGTTTAATGGT 1002
BSNT_01432___ 1006 TTTTCCGCCCCGCAAAACCGGTTTGAATATATTCTGGCCTTTACCATTGC 1055
|||||.||.|||||..||.||||||||||.||||||||||||||..||
BPUM_0801___y 1003 TTTTCGGCACCGCAGTACAGGTTTGAATACATTCTGGCCTTTACAGTT-- 1050
BSNT_01432___ 1056 GGGAGCAGCTGCGGCTGGTTTG---TCAC-----AGC-TGTCT------- 1089
|||||.|.|| ||| |||| ||| |.|||
BPUM_0801___y 1051 -GGAGCGGTTG--------TTGCCATCACGATCAAGCATTTCTCGCAAAT 1091
BSNT_01432___ 1090 -GAATTGAAACGGAAAGAAC-TGC--TCCCGGCCGCAGCTG--TCGTCCT 1133
||.|.|||..|||||.|.| ||| ||...|.||| .|| ||||..|
BPUM_0801___y 1092 CGAGTGGAAGTGGAAAAAGCGTGCGGTCTTAGGCGC--TTGGATCGTGTT 1139
BSNT_01432___ 1134 GCTTCTT-TACTTG---TATCATA---TTCAAAGGTATAAGCTCGATATA 1176
.|||||| .|.|.| |.|||.| ..|||||| ||.|.|
BPUM_0801___y 1140 CCTTCTTGCAGTCGCCCTTTCAGAACGAGCAAAGG---------GAAACA 1180
BSNT_01432___ 1177 TGGAAGCC--TGCGAATGAAAGTATTCTATTGCTCTTACTCATGACAATC 1224
||||.|.| ||.|..|..|.||||...|.|||| ||.||.|.
BPUM_0801___y 1181 TGGATGTCGTTGTGTTTACAGGTATAGGACTGCT--------TGTCATTA 1222
BSNT_01432___ 1225 GCAGCCTTGT--------TTGCTGCAGCTTTTGCGAAAAAACGGGCAAAA 1266
| ||||| |.|.|||| ||||.|||||||
BPUM_0801___y 1223 G----CTTGTTCTTCCTATGGATGCA-----TGCGGAAAAACG------- 1256
BSNT_01432___ 1267 ATGGCTGTGTACGGTATAATCAT-----TCTTTCTTC-GCTGT------- 1303
|.|.||| |||.|.||| ||.||
BPUM_0801___y 1257 ----------------TCAGCATCTTCGTCTCTTTTCTGCAGTGCTCATC 1290
BSNT_01432___ 1304 -TTGTC-GCCAACTCCTATCAAAAATACGC--GC---TCTCAGAAGGCGG 1346
||||| |||.| ||.|.| || || |.||||.|| ||
BPUM_0801___y 1291 GTTGTCAGCCTA-----ATGACA-----GCAGGCGTGTATCAGCAG--GG 1328
BSNT_01432___ 1347 CGATTTGGATAGTGTGACAAAAGAA-----------------------TA 1373
|.|.|| .|.|||.|.|||.| ||
BPUM_0801___y 1329 CTACTT-----ATCTGAAAGAAGCAATATAAAGAGCGTATCAGATACGTA 1373
BSNT_01432___ 1374 TCTTACAAGTGAGGAATACAGAGGGCGGGA----ATCATCTG-AGCTCAT 1418
|||.|..|||||||.||| .||.||| |.||..|| |||||||
BPUM_0801___y 1374 TCTGAATAGTGAGGCATA-----TGCTGGACATGAGCAAATGAAGCTCAT 1418
BSNT_01432___ 1419 ----CAGACGTTTACAG---------AAGGAAGACGATGATCCGCTCATG 1455
|||| ||.|.|| || ||||| ||||||...
BPUM_0801___y 1419 TCAGCAGA--TTCAAAGCCGCTCTTCAA--AAGAC------CCGCTCGCT 1458
BSNT_01432___ 1456 AGAATCGATTGGATGAACGGGGTCCGCAATAATACGCCAATCATTT-ACG 1504
.||||.|||||||||||.||.||.||.||.||||| ||.||.|||| |.|
BPUM_0801___y 1459 CGAATTGATTGGATGAATGGCGTGCGAAACAATAC-CCCATTATTTGAAG 1507
BSNT_01432___ 1505 GATTTAATGGCTTCAGCGCGTATTCCAGCATTTTAAACAAAGATCTGCTG 1554
|.||..|.|||.|.||.|.||||||.||.||.||.||..|..||.||||.
BPUM_0801___y 1508 GCTTCCAGGGCATGAGTGTGTATTCAAGTATATTGAATCAGCATTTGCTC 1557
BSNT_01432___ 1555 GCCTTCTATTGGAATGATTTAAGC--ATCGATATGGGCAGGGAAAGCGTC 1602
...|||||.||||||||..| || |||||||||||..|||||||.|||
BPUM_0801___y 1558 AATTTCTACTGGAATGACCT--GCAAATCGATATGGGGCGGGAAAGTGTC 1605
BSNT_01432___ 1603 AGCCGTTACGCGTCATTGGGAGACAGGGCGAATTTATACAGCCTGCTTTA 1652
|||||.||.||..||.||||.||.|||||||||||||||||.|||...||
BPUM_0801___y 1606 AGCCGGTATGCAACAATGGGGGATAGGGCGAATTTATACAGTCTGACCTA 1655
BSNT_01432___ 1653 CGGCAAATATTATATGACCGAAAAAACA-AACGAAGCCAGCGTC-CCGTA 1700
|||.||.||||||||| |.||||| .|.||.|||....|| ||| .
BPUM_0801___y 1656 CGGGAAGTATTATATG-----AGAAACAGTATGATGCCTTACTCACCG-C 1699
BSNT_01432___ 1701 CGGCTTCAAA----AAGC--ATTTAGAAACA--GAGCATTATGCAGTTTA 1742
|.|||| | |||| ||.|.|||| | ||||||||||..||.||
BPUM_0801___y 1700 CAGCTT---ATTTTAAGCCAATCTTGAAA-AGTGAGCATTATGAGGTATA 1745
BSNT_01432___ 1743 TGAGAATCAGTACATG----CTTCCATTCGTTAAAACAGCGGATGCCA-- 1786
|||.|| ||||.| ||.|||||.|..|.||||.||....|||
BPUM_0801___y 1746 TGAAAA----TACACGGTCACTGCCATTTGCAAGAACAACGAGCACCATT 1791
BSNT_01432___ 1787 TATACAG--------CGAAAGTGAGCTGGACCGATTGC--CCGCTCTTGC 1826
|||.||| ..||| ||.||| |.||.||||.
BPUM_0801___y 1792 TATTCAGAACAATCATTAAA------------GAATGCCTCAGCACTTGA 1829
BSNT_01432___ 1827 GAAAGAACAGGCGATGCTGAAAGGAATCATATTAAAAGATCCATCAGGAA 1876
.|.|||.||.|||||||||.||||.|||||.|||||..| |..|||||
BPUM_0801___y 1830 TAGAGAGCATGCGATGCTGCAAGGCATCATTTTAAACAA---AAAAGGAA 1876
BSNT_01432___ 1877 ------AAACGGAGCAGACACCAAAAC-AGTCCAATTTGATCACCAA-GT 1918
|||..||||...|.|.|.|.| ||||.|| ||| ||.|| .|
BPUM_0801___y 1877 ACGCTGAAATCGAGCGTGCGCAAGATCGAGTCAAA---GAT-ACGAATAT 1922
BSNT_01432___ 1919 CGGACATTACCGCAAAACAAGCCCAGTATCAAAACG-----GGC-TGCTA 1962
| || |||.| |||||| |.|||| ||| ||| ||||.
BPUM_0801___y 1923 C---CA-TACGG---AACAAG--CTGTAT----ACGAACATGGCGTGCTT 1959
BSNT_01432___ 1963 ACCGTA-ACTGGAGAAAACGGAGGAGAGCTGATCATCACCCCGAAACAGC 2011
...||| || |||||||..||.|| .||||..|||||.| .|.|||
BPUM_0801___y 1960 GATGTATAC-GGAGAAATGGGCGG---TCTGAATATCACAC--TACCAG- 2002
BSNT_01432___ 2012 CAT--CATCCGCTC---CGGGAGACTACTATGTCAGCTTTTATTTGAAAA 2056
|| ||| ||||| |.||.||....|||||.|||||||||.|||||.
BPUM_0801___y 2003 -ATGACAT-CGCTCGCGCTGGGGATGTGTATGTGAGCTTTTATGTGAAAC 2050
BSNT_01432___ 2057 GCAAAGCAAAAGACAG----------AGGATTTGCGTTAAAGGTAAATGA 2096
| ||||| |||||||..||||...||..|.||
BPUM_0801___y 2051 G----------GACAGATCGTAACGAAGGATTTCAGTTATCCGTTGACGA 2090
BSNT_01432___ 2097 TTATGTCACAACAAGGAAATCGAACAAATCGATATATAAAACCGGAGTAA 2146
.|||||||||.||.|.|||...||.|.|||.||.||.|||||.||.||.|
BPUM_0801___y 2091 CTATGTCACATCACGAAAAAGCAATACATCCATCTACAAAACTGGCGTCA 2140
BSNT_01432___ 2147 ATAATATAACGGTAAGAGTGCCT-------AAATCAGGCCATATCTCAAT 2189
||.|..|.|||.|..|.||.||| ||||| .||||
BPUM_0801___y 2141 ATGAAGTGACGATTCGGGTCCCTGCGGAAAAAATC-------CTCTC--- 2180
BSNT_01432___ 2190 CAATC---TTCCGAAAGGAACCTATGAGCTGA-------GAAACATAGCG 2229
||.|| |.||.|||||.|..||||||||.| ||| |
BPUM_0801___y 2181 CATTCGAGTACCAAAAGGGATATATGAGCTCAATCAACTGAA-------G 2223
BSNT_01432___ 2230 CTCTATGAAGAAAATTACCAAACGCTGAAAAACGCTGTAATGCAAAATAA 2279
||.|||.|.|||..|||| ||| ||..|
BPUM_0801___y 2224 CTGTATCATGAACCTTAC--------------CGC-GTCCT--------- 2249
BSNT_01432___ 2280 AACAGAGAAAGC---------AGACAAACTGAAT---------------- 2304
||||||||| |||.||||||.||
BPUM_0801___y 2250 ---AGAGAAAGCATATGAAAAAGAAAAACTGGATGATGGCAGCCAGCAGG 2296
BSNT_01432___ 2305 TGGAAC--AAAAATCGACTGACCTTTGC-CTATCATCTGTCAAAA----- 2346
||.||| |||||| .||.| ||||.| .|.||||.||..||.|
BPUM_0801___y 2297 TGAAACTTAAAAAT-AACCG--CTTTACGATTTCATATGAGAACAAGCGC 2343
BSNT_01432___ 2347 ---GACCAGTACATCATGCTTCCGATCCCATATGAAAAAGGCTGGGAGCT 2393
||..|.||.||.||.||.||..|.|||||||||||||||||||||||
BPUM_0801___y 2344 GGCGATGATTATATGATTCTGCCTGTTCCATATGAAAAAGGCTGGGAGCT 2393
BSNT_01432___ 2394 GAAGATCAACGGAAAAACACAGA----AGATCGAAAAAGCGGATTATGCT 2439
.|.|.|.||||| |||||.| |.||.|||.||||..|.||..|.
BPUM_0801___y 2394 CACGGTGAACGG----ACACAAAACCGATATTGAACAAGCCAACTACACG 2439
BSNT_01432___ 2440 TTTATAGGCTT--CA--AGGCGCAAAAGGGAGACAATCACATTGAGCTGA 2485
|||||.||.|| || || ||||.|||.|.||..|.||||.|||.|
BPUM_0801___y 2440 TTTATTGGTTTTCCAATAG----AAAAAGGAAAAAACGAGATTGTGCTAA 2485
BSNT_01432___ 2486 CTTACTATCCGCCATACTTCAAAATATC-GGCGATCATATCTCTCGTCAG 2534
|.|||||||||||.||..|||.||| || .||..|.||.||.||||||||
BPUM_0801___y 2486 CCTACTATCCGCCTTATATCAGAAT-TCTCGCATTGATTTCACTCGTCAG 2534
BSNT_01432___ 2535 TCTGCTGCTTGCTGTTTTCTAT------ATAAGACGTAAAAAGCCCGGCT 2578
|.||.|...|||..|..||||| |.||.||..||.||.|.| |.
BPUM_0801___y 2535 TTTGATTGGTGCGATCCTCTATGCACGGAGAAAACACAAGAAACAC--CA 2582
BSNT_01432___ 2579 CTATATAG----- 2586
||.|..||
BPUM_0801___y 2583 CTTTTCAGCATAA 2595
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