Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01417 and BPUM_0795

See Amino acid alignment / Visit BSNT_01417 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:00
# Commandline: needle
#    -asequence dna-align/BSNT_01417___recX.1.24716.seq
#    -bsequence dna-align/BPUM_0795___recX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01417___recX-BPUM_0795___recX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01417___recX-BPUM_0795___recX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01417___recX
# 2: BPUM_0795___recX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 860
# Identity:     556/860 (64.7%)
# Similarity:   556/860 (64.7%)
# Gaps:         133/860 (15.5%)
# Score: 1678.0
# 
#
#=======================================

BSNT_01417___      1 ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTT     50
                     |||||.|.||||||||||||.||..|.||||||||.|||||.||.||..|
BPUM_0795___r      1 ATGCCCTATATTACAAAAATCTCTGCTCAAAAAAACAATACAGAGCGGGT     50

BSNT_01417___     51 CAATATTTTTCTGGATGATAAATACGCCTTCAGCGTGGACGCGGATGTGC    100
                     .||.||.|||||.|||||.||.||||||||.||||||||....|||||||
BPUM_0795___r     51 GAACATCTTTCTTGATGAAAAGTACGCCTTTAGCGTGGATCTAGATGTGC    100

BSNT_01417___    101 TCGTGAA-----ATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTG    145
                     ||||..|     |||||     ||.||.|||||||||||.||.||....|
BPUM_0795___r    101 TCGTCCAGCACGATTTG-----AAAAAAGGAAAAGAACTGGACGAAGCCG    145

BSNT_01417___    146 ACATCATTGAGATTCAATACGGCGATGAAGTGAAGAAAGG-CTTCAACCG    194
                     |.||||||||.|||||||.|||.||||..||.||.||||| .||||.|.|
BPUM_0795___r    146 ATATCATTGACATTCAATTCGGTGATGCTGTCAAAAAAGGATTTCAGCAG    195

BSNT_01417___    195 TGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTCGAGG    244
                      ||..|.||.|.|||||||||.||||||.|.||...||||||.|||    
BPUM_0795___r    196 -GCCGTCGATTATTTATCCTACCGAATGAGATCAGTGAAAGAAGTC----    240

BSNT_01417___    245 ACC----ACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGT    290
                     |||    |.||.|.|||||||||||.|.||.|.||.|.||||...|||.|
BPUM_0795___r    241 ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCCATTAGTGAAAT    290

BSNT_01417___    291 CATCCATAGGCTTAACG-ATTACAAGTACTTAAACGACCAGGAATTTGCC    339
                     .||.||.| ..||||.| ||||||||||..||||.||.|..||||||||.
BPUM_0795___r    291 TATACACA-AATTAAAGCATTACAAGTATGTAAATGATCTCGAATTTGCA    339

BSNT_01417___    340 GCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGAT--    387
                     |.|||.||||||||.||||||...|||||.|||.|.|||||.||  ||  
BPUM_0795___r    340 GAAGCTTATGTCAGTACTCACCGTAAAACGAACAGCAAAGGGCC--ATCC    387

BSNT_01417___    388 GTTTTGTTCAGAGAGCTAAGAGC-GAAGGGAATTGATGACGA-TACAATT    435
                     |||.||...|.|||||||| ||| .||.|||||.||.||.|| .|||.|.
BPUM_0795___r    388 GTTCTGAAAAAAGAGCTAA-AGCTCAAAGGAATAGAGGATGACCACATTG    436

BSNT_01417___    436 AAGGAG-----GCGCTAAGTTCCTTTTCCTTTGAAGATCAGACA-----A    475
                     ||..||     .|||.|       |.|||  |||.|| |..|||     |
BPUM_0795___r    437 AACAAGCACTATCGCAA-------TATCC--TGATGA-CTTACAGCTGGA    476

BSNT_01417___    476 GAGAAGCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTT    525
                     | |||||.||.|||||.|||.|.||||||.|.|.||||||.|||||.|.|
BPUM_0795___r    477 G-GAAGCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGT    525

BSNT_01417___    526 TCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCAGCTTCAGCGCAAGGG    575
                     ||.||.||||||.||.|.||||||..|.|.||||||||.|||||.|||||
BPUM_0795___r    526 TCCACAAAAGAAATCGAGCAGCGCATCAAACTGCAGCTGCAGCGAAAGGG    575

BSNT_01417___    576 CTTCTCATTTGATGTTATCAGCGCGGCGATGGATCA--GAT---------    614
                     .||.||.|||||                   |||||  |||         
BPUM_0795___r    576 ATTTTCGTTTGA-------------------GATCATTGATAAAGCCCTT    606

BSNT_01417___    615 --TGAA---TATGA---AAATGATGAAGACACGGAGAAAGAAGCGCTGCG    656
                       .|||   |||||   |.|.||.||.||.|.|||..||||||||||   
BPUM_0795___r    607 CAAGAAGCCTATGATGGACAAGAAGAGGAAAAGGAAGAAGAAGCGCT---    653

BSNT_01417___    657 CCTTCA---CGCGGAAAAAGCGTTTAGAAAATACCGC---------TATG    694
                     ||||.|   ...|||.||.||      ||||   |||         ||.|
BPUM_0795___r    654 CCTTTATATGATGGAGAAGGC------AAAA---CGCAAGGTAGGATACG    694

BSNT_01417___    695 ACGGCTCATATGA----AAGCGCCATTAAGGTCAAACAATTTTTATTCCG    740
                     ||||.||||.|||    |||    ||.|||||.||.||||||||||||.|
BPUM_0795___r    695 ACGGATCATTTGAAAAGAAG----ATGAAGGTGAAGCAATTTTTATTCAG    740

BSNT_01417___    741 CAAAGGATTCTCA-CTCGATTTAATCGAGCA---ATTACTGCAGGA-AGA    785
                     .|||||.|| |.| |||||...|||.||.||   .|||      || |.|
BPUM_0795___r    741 AAAAGGCTT-TGATCTCGACACAATTGATCACGTTTTA------GACAAA    783

BSNT_01417___    786 GGAGTACTGA    795
                     || |.|.|||
BPUM_0795___r    784 GG-GGAATGA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01417 and BPUM_0795

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
