Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01411 and BPUM_0791
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_01411.1.24716.seq
# -bsequence dna-align/BPUM_0791___yfhC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01411-BPUM_0791___yfhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01411-BPUM_0791___yfhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01411
# 2: BPUM_0791___yfhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 640
# Identity: 312/640 (48.8%)
# Similarity: 312/640 (48.8%)
# Gaps: 221/640 (34.5%)
# Score: 843.5
#
#
#=======================================
BSNT_01411 0 -------------------------------------------------- 0
BPUM_0791___y 1 ATGCCAGAAATCAAACAAAAAACAGAAGCGTTAACGGTACGAGACGCTGT 50
BSNT_01411 1 ----------------------------------------------AT-- 2
||
BPUM_0791___y 51 CAGATATAGACGATCCATTCGAAAATTTAAAGAAACGCCGGTGACCATCG 100
BSNT_01411 3 ----GCTTGAAACG------------GCAAAATATGCGCCAAATCACAGA 36
||||.|..|| |||...|||||.||.|||||.|.|
BPUM_0791___y 101 AGCAGCTTCAGCCGTTATTAGAGGATGCAGTCTATGCACCGAATCATAAA 150
BSNT_01411 37 GTGACAGAGCCATGGAGATTTATTTACGTTTCCAGTGAGACAGGTAAAGC 86
.|.||.|||||.|||.|.|||.|.|| |.|.|| |||.|.|.||||
BPUM_0791___y 151 ATCACGGAGCCGTGGCGCTTTCTATA----TGCGGT--GACGGATGAAGC 194
BSNT_01411 87 GAACCTCATCAATACATTTG----------CA--GCGTTCTCTATG---A 121
||| |.|| ||||||| || |||||||..|.| |
BPUM_0791___y 195 GAA----AGCA--ACATTTGTTGAACGCTTCATTGCGTTCTTCAAGCGCA 238
BSNT_01411 122 AATCCAAGCCGGATATGACAGAGGAAAAGCT---TCAAAA---------- 158
| |||.||.|||...|..||.||||||.| ||||.|
BPUM_0791___y 239 A---CAACCCAGATGCAAAGGAAGAAAAGATCAATCAATATAGAGATTAC 285
BSNT_01411 159 -TTTCAAAAACACACTTGGGCGCGTTCCGGGATTTCTCCTCGTCGTGTTT 207
|||||||| |||||.|...||.|.||.||.|||||.
BPUM_0791___y 286 TTTTCAAAA--------------GTTCCAGCCCTTTTACTTGTAGTGTTA 321
BSNT_01411 208 CGGGAAGATGAAAAC----------GAAAGAGCGCGGGACGACGATTTTG 247
...|||||.||.||| ||| |.||.|||||||
BPUM_0791___y 322 AAAGAAGACGAGAACCCAGTGGTGAGAA----------ATGATGATTTTG 361
BSNT_01411 248 CGGCAACAAGCTCGTTGATTCAAAATCTT-CAGCTTCTCGCTTGGGAAAA 296
|.||....|||.|..|.|||||||| ||| |||||.||.||||||||..|
BPUM_0791___y 362 CCGCTGTGAGCGCACTCATTCAAAA-CTTCCAGCTGCTTGCTTGGGATCA 410
BSNT_01411 297 AGGAATCGGCATGGTTTGGAAAAGCGGAAAAATCCTTTATGACAAAGAAG 346
|||||||||.|||||.|||||.|||||....|||.|.||.|||||||...
BPUM_0791___y 411 AGGAATCGGTATGGTGTGGAAGAGCGGCCGCATCTTATACGACAAAGGCT 460
BSNT_01411 347 TCCATCAGGCCTTTGGTTTGCAGGATAATGAGCGTTTCGCCGCTATCATA 396
|.||.||||.|.|.||.||..||||.||.|||||.||.||.||.|||.|.
BPUM_0791___y 461 TTCAACAGGACATGGGCTTAAAGGAAAACGAGCGATTTGCTGCCATCCTT 510
BSNT_01411 397 CAAACGGGTTATCCTGACGAGGCGCCGGAAGTGAAAAA--ACG-CA---- 439
||.|..||||||||.||.||||.|||.|| .|||||| ||| ||
BPUM_0791___y 511 CATATTGGTTATCCAGAAGAGGTGCCTGA--GGAAAAATCACGTCAGAAA 558
BSNT_01411 440 -CACCGA---TCCGCGACCGGTTCACTGAAATGTAA---- 471
||.|.| ||| |.||.||||| |||
BPUM_0791___y 559 GCATCAAGTCTCC---------TTACAGAAAT-TAAATAA 588
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