Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01395 and BPUM_0784
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_01395___yfiT.1.24716.seq
# -bsequence dna-align/BPUM_0784___yfiT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01395___yfiT-BPUM_0784___yfiT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01395___yfiT-BPUM_0784___yfiT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01395___yfiT
# 2: BPUM_0784___yfiT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 609
# Identity: 344/609 (56.5%)
# Similarity: 344/609 (56.5%)
# Gaps: 153/609 (25.1%)
# Score: 806.0
#
#
#=======================================
BSNT_01395___ 1 ATGACATCAGT-CAATCTAAGCTACCCAATAGGAGAATACAAGCCGAGGG 49
|||||.|||.| ||| |||||.||.||...|||....|||...|
BPUM_0784___y 1 ATGACGTCATTACAA-------TACCCGATTGGCTTATATGGACCGGTTG 43
BSNT_01395___ 50 AATCCATATCGAAGGAGCAAAAAGATAAATGGAT---TCAAGTACTTGAA 96
||...|.|.|.|||||.||...|||...|||||| |||..||..|| |
BPUM_0784___y 44 AAAATAAAACAAAGGAACAGCTAGAGGCATGGATTGATCAGTTAGCTG-A 92
BSNT_01395___ 97 GAAGTGCCGGCAA-AAT-TGAAGCAAGCTGTAGAGGGCA---------TG 135
|| |.|| .||| ||| |||||| ||.|| ||
BPUM_0784___y 93 GA--TTCC-ACAACAATATGAAGC----------GGTCACCAATCAATTG 129
BSNT_01395___ 136 ACGGACAGC-CAGCTTGACACACCGTACCGGGAC-GGTGGATGGACCGTT 183
||.|| .|| |||||.||.|||||.||.| |||| ||.|||||||||||.
BPUM_0784___y 130 ACAGA-TGCTCAGCTGGATACACCCTATC-GGACTGGAGGATGGACCGTC 177
BSNT_01395___ 184 CGGCAAGTTATTCATCATCTGGCTGACAGTCATATGAACAGCTATATTCG 233
||.||..|.||||||||..|.||.|||||||||.|.||...|||..|.||
BPUM_0784___y 178 CGTCAGCTCATTCATCACGTAGCAGACAGTCATCTAAATGCCTACTTACG 227
BSNT_01395___ 234 TTTTAAATTGAGCTTG-----ACGGAAGAGACACCGGCTATCCGTCCGTA 278
.||.| |||||| ||.|||||.||||||...||||||||.||
BPUM_0784___y 228 ATTCA-----AGCTTGCGCTCACAGAAGAAACACCGCACATCCGTCCATA 272
BSNT_01395___ 279 TGATGAAAAAGCATGGTCG--GAGCTAAAAGACTCGAAAACGGCAGATCC 326
||||.|....|.|| ||| |||||...||| |.|.||| ||| ||
BPUM_0784___y 273 TGATCAGGCGGGAT--TCGCCGAGCTTCCAGA-TAGCAAA--GCA---CC 314
BSNT_01395___ 327 GAGCGGCTCGCTTTCGCTTTTGCAGGAGCTTCA-CGGAAGATGGACGGCT 375
.|.|.|| ||.||.|| |..||||| |.|.|| |
BPUM_0784___y 315 TATCAGC---CTATCACT-------GCCCTTCATCAGCAG---------T 345
BSNT_01395___ 376 CTGCTCCGC--------------ACTCTGACGGAT--CAGC----AATTT 405
||||..||| |||..||.|||| |||| .|.||
BPUM_0784___y 346 CTGCATCGCAGGTGGGTGACATTACTTAGAGGGATGACAGCGGAAGACTT 395
BSNT_01395___ 406 AAGCGCGGATT-TTATCACC---CTGAT--ACAAA-GGAGATC-----AT 443
.|..|||..|| |||||||| |.||| ||||| ||.| || ||
BPUM_0784___y 396 CACAGCGTCTTATTATCACCCAGCCGATCAACAAACGGTG-TCCTTATAT 444
BSNT_01395___ 444 TACCCTGGAGAACACGCTCGGCCTGTATGTCTGGCACTCA---CATCACC 490
.||.| |||| ||..||||.|||||||||||| |||||||
BPUM_0784___y 445 GACGC-----AACA-----GGAATGTACGTCTGGCACTCAACGCATCACC 484
BSNT_01395___ 491 ATATCGCTCATATTACGGAGCTT------------TCTAGACGGATGGGG 528
|.||.|||||.||||| .|| ||.|
BPUM_0784___y 485 ---TTGCCCATATCACGGA-ATTAATCAAAAGAAATCAA----------- 519
BSNT_01395___ 529 TGGTCTTAA 537
|||..||||
BPUM_0784___y 520 TGGAATTAA 528
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