Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01395 and BPUM_0784

See Amino acid alignment / Visit BSNT_01395 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:59
# Commandline: needle
#    -asequence dna-align/BSNT_01395___yfiT.1.24716.seq
#    -bsequence dna-align/BPUM_0784___yfiT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01395___yfiT-BPUM_0784___yfiT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01395___yfiT-BPUM_0784___yfiT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01395___yfiT
# 2: BPUM_0784___yfiT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 609
# Identity:     344/609 (56.5%)
# Similarity:   344/609 (56.5%)
# Gaps:         153/609 (25.1%)
# Score: 806.0
# 
#
#=======================================

BSNT_01395___      1 ATGACATCAGT-CAATCTAAGCTACCCAATAGGAGAATACAAGCCGAGGG     49
                     |||||.|||.| |||       |||||.||.||...|||....|||...|
BPUM_0784___y      1 ATGACGTCATTACAA-------TACCCGATTGGCTTATATGGACCGGTTG     43

BSNT_01395___     50 AATCCATATCGAAGGAGCAAAAAGATAAATGGAT---TCAAGTACTTGAA     96
                     ||...|.|.|.|||||.||...|||...||||||   |||..||..|| |
BPUM_0784___y     44 AAAATAAAACAAAGGAACAGCTAGAGGCATGGATTGATCAGTTAGCTG-A     92

BSNT_01395___     97 GAAGTGCCGGCAA-AAT-TGAAGCAAGCTGTAGAGGGCA---------TG    135
                     ||  |.|| .||| ||| ||||||          ||.||         ||
BPUM_0784___y     93 GA--TTCC-ACAACAATATGAAGC----------GGTCACCAATCAATTG    129

BSNT_01395___    136 ACGGACAGC-CAGCTTGACACACCGTACCGGGAC-GGTGGATGGACCGTT    183
                     ||.|| .|| |||||.||.|||||.||.| |||| ||.|||||||||||.
BPUM_0784___y    130 ACAGA-TGCTCAGCTGGATACACCCTATC-GGACTGGAGGATGGACCGTC    177

BSNT_01395___    184 CGGCAAGTTATTCATCATCTGGCTGACAGTCATATGAACAGCTATATTCG    233
                     ||.||..|.||||||||..|.||.|||||||||.|.||...|||..|.||
BPUM_0784___y    178 CGTCAGCTCATTCATCACGTAGCAGACAGTCATCTAAATGCCTACTTACG    227

BSNT_01395___    234 TTTTAAATTGAGCTTG-----ACGGAAGAGACACCGGCTATCCGTCCGTA    278
                     .||.|     ||||||     ||.|||||.||||||...||||||||.||
BPUM_0784___y    228 ATTCA-----AGCTTGCGCTCACAGAAGAAACACCGCACATCCGTCCATA    272

BSNT_01395___    279 TGATGAAAAAGCATGGTCG--GAGCTAAAAGACTCGAAAACGGCAGATCC    326
                     ||||.|....|.||  |||  |||||...||| |.|.|||  |||   ||
BPUM_0784___y    273 TGATCAGGCGGGAT--TCGCCGAGCTTCCAGA-TAGCAAA--GCA---CC    314

BSNT_01395___    327 GAGCGGCTCGCTTTCGCTTTTGCAGGAGCTTCA-CGGAAGATGGACGGCT    375
                     .|.|.||   ||.||.||       |..||||| |.|.||         |
BPUM_0784___y    315 TATCAGC---CTATCACT-------GCCCTTCATCAGCAG---------T    345

BSNT_01395___    376 CTGCTCCGC--------------ACTCTGACGGAT--CAGC----AATTT    405
                     ||||..|||              |||..||.||||  ||||    .|.||
BPUM_0784___y    346 CTGCATCGCAGGTGGGTGACATTACTTAGAGGGATGACAGCGGAAGACTT    395

BSNT_01395___    406 AAGCGCGGATT-TTATCACC---CTGAT--ACAAA-GGAGATC-----AT    443
                     .|..|||..|| ||||||||   |.|||  ||||| ||.| ||     ||
BPUM_0784___y    396 CACAGCGTCTTATTATCACCCAGCCGATCAACAAACGGTG-TCCTTATAT    444

BSNT_01395___    444 TACCCTGGAGAACACGCTCGGCCTGTATGTCTGGCACTCA---CATCACC    490
                     .||.|     ||||     ||..||||.||||||||||||   |||||||
BPUM_0784___y    445 GACGC-----AACA-----GGAATGTACGTCTGGCACTCAACGCATCACC    484

BSNT_01395___    491 ATATCGCTCATATTACGGAGCTT------------TCTAGACGGATGGGG    528
                        |.||.|||||.||||| .||            ||.|           
BPUM_0784___y    485 ---TTGCCCATATCACGGA-ATTAATCAAAAGAAATCAA-----------    519

BSNT_01395___    529 TGGTCTTAA    537
                     |||..||||
BPUM_0784___y    520 TGGAATTAA    528


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