Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01202 and BPUM_0776
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_01202___yesY.1.24716.seq
# -bsequence dna-align/BPUM_0776___yesY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01202___yesY-BPUM_0776___yesY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01202___yesY-BPUM_0776___yesY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01202___yesY
# 2: BPUM_0776___yesY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity: 434/705 (61.6%)
# Similarity: 434/705 (61.6%)
# Gaps: 126/705 (17.9%)
# Score: 1156.5
#
#
#=======================================
BSNT_01202___ 1 ATGGCAA--ATCATATTTATCTTGCCGGCGATTCGACTGTTCAAACGTAT 48
|||.||| ||| |||||| ||.||.|||||.||||||..|.|.||.
BPUM_0776___y 1 ATGACAACCATC-TATTTA----GCTGGTGATTCAACTGTTGCATCTTAC 45
BSNT_01202___ 49 GGAGACAGCACAAATCAAGGGGGCTGGGGGCAGTTT----CTCGGCT--- 91
..|||..|..|...||||||.||.|||||..||||| .|| |||
BPUM_0776___y 46 CCAGATCGTCCTGTTCAAGGAGGATGGGGAGAGTTTTTACATC-GCTATA 94
BSNT_01202___ 92 ---CGCATCTGCCG-GAGCATATTCAAGT-GATCAACAGAGCGATCGGGG 136
|||| .|.|| |||| || || ||||.|.||.|||||.|
BPUM_0776___y 95 CAGCGCA--AGACGTGAGC--------GTCGA-CAACCGCGCAATCGGTG 133
BSNT_01202___ 137 GAAGAAGCTCGAAAACATTTGTGGAAGAGGGCAGGCTTCAGGCAATCCTT 186
||||||||||.||||||||..|.|||||.||..|||||.|...|||..|.
BPUM_0776___y 134 GAAGAAGCTCAAAAACATTCATTGAAGAAGGACGGCTTGATAAAATATTG 183
BSNT_01202___ 187 GATGTGATTGAGCCGGATGATTGGCTGTTCGTGCAGATGGGCCATAATGA 236
|.||..|||.||||.|..||||||||||||...||.|||||.||.|||||
BPUM_0776___y 184 GCTGACATTCAGCCTGGGGATTGGCTGTTCACCCAAATGGGGCACAATGA 233
BSNT_01202___ 237 CGCGTCGAAAAATAAGCCGGAGCGCTACACCGAGCCCTATACTACTTATA 286
|||.||.|...|.|||||.|||||..|.||.||.||.|.|||.||.||||
BPUM_0776___y 234 CGCTTCAACGGAGAAGCCCGAGCGGCATACAGATCCTTTTACGACGTATA 283
BSNT_01202___ 287 AACAATATTTAAAGCAGTATATCGCA-GGCGCACGGGAAAAAGGCGC-CC 334
||...|||||....||.||||| .|| ||.|||.|.|..|||||.|| .|
BPUM_0776___y 284 AAAGTTATTTGTCACAATATAT-TCACGGAGCAAGAGCGAAAGGTGCTAC 332
BSNT_01202___ 335 ATCCGCTTCTCATT-ACCCCCGTAGCCCGCTTTCATTACGAAAATGGCGT 383
| |||||| |.||| ||.||.||.|..||||||||| |||||.|.||
BPUM_0776___y 333 A-CCGCTT-TTATTAACACCAGTCGGTCGCTTTCAT---GAAAAAGACG- 376
BSNT_01202___ 384 G----TTTTTGAACGATTTTCCAGATTACTGCATTGCC---ATGAAGCAG 426
| |.|.|.||||||||.||.|||||||| |||| ||||| ||
BPUM_0776___y 377 GAGAATATATCAACGATTTCCCTGATTACTG---TGCCGCTATGAA--AG 421
BSNT_01202___ 427 A-----CGGCTGAAGAGGAGAATGTCCAGCTCATTGATCTGATGGAGAA- 470
| |.|.|||||| |||| ||||..||..|.|||.| ||
BPUM_0776___y 422 AACTAGCTGATGAAGA--AGAA-GTCCTTCTTGTCGATTT-------AAA 461
BSNT_01202___ 471 ------AAGCCTT--GCTTT-----CTTTACTG---AGAAGGGCGAGGAA 504
||||||| |.||| .|||.|.| ||| |||
BPUM_0776___y 462 TACGGCAAGCCTTCAGTTTTATCAAATTTCCGGCATAGA--------GAA 503
BSNT_01202___ 505 AAAGTATAC-ACCTATTTTATGATTTCAGAAGGGATTAACGATTACACGC 553
||.| || .|.||.||||||.|.|||..|||.||..|.|||..|||||
BPUM_0776___y 504 AACG---ACTTCTTACTTTATGCTGTCAACAGGCATAGAGGATCGCACGC 550
BSNT_01202___ 554 ATTTTACAAAAAAAGGCGCAAATGAAATGGCGAAACTTGTGGCA----AA 599
|.|||||||||.||||.|||.|||..||.||.|.||||||..|| ||
BPUM_0776___y 551 ACTTTACAAAAGAAGGAGCAGATGCGATTGCAAGACTTGTTTCACTGGAA 600
BSNT_01202___ 600 AGGCATAAAGGAGCTCGGCCTGCCATTGACAGAATCGATCATCAAAGAAA 649
.||||.||.||.|| ||| |.||||..|
BPUM_0776___y 601 ----TTAAAAGACCTTGG------ATT------AACGATTGT-------- 626
BSNT_01202___ 650 GGTGA 654
||||
BPUM_0776___y 627 -GTGA 630
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