Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01342 and BPUM_0775

See Amino acid alignment / Visit BSNT_01342 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:56
# Commandline: needle
#    -asequence dna-align/BSNT_01342___yfjM.1.24716.seq
#    -bsequence dna-align/BPUM_0775___yfjM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01342___yfjM-BPUM_0775___yfjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01342___yfjM-BPUM_0775___yfjM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01342___yfjM
# 2: BPUM_0775___yfjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 505
# Identity:     311/505 (61.6%)
# Similarity:   311/505 (61.6%)
# Gaps:          92/505 (18.2%)
# Score: 850.5
# 
#
#=======================================

BSNT_01342___      1 ATGAAACGGCTATGCATCATCCCCTGCGGCAAGAAAAAAATCTGGGACGT     50
                     .||||.||..||||.|||||.||.||.||...|||.|||||.||||||||
BPUM_0775___y      1 GTGAAGCGAGTATGTATCATTCCATGTGGGGCGAAGAAAATTTGGGACGT     50

BSNT_01342___     51 CCAGCCTGATGCCGGG------CCGGTAAGAGCAGAGGA----CGCTTAT     90
                     ||||||.||.||.|||      ||||          .||    ||.||||
BPUM_0775___y     51 CCAGCCAGAAGCAGGGAGCCAACCGG----------CGAACCTCGTTTAT     90

BSNT_01342___     91 CTCAGCCCGTTTCATCAGGCGTGCG-AACGGTATGCGAAAGCAT--TTTT    137
                     .|.||.|||.|.||||| .|||.|| ||.|.|||||..||.|.|  ||||
BPUM_0775___y     91 TTAAGTCCGCTGCATCA-ACGTACGAAAAGCTATGCCCAAACGTTCTTTT    139

BSNT_01342___    138 CGATGAGTGGGTGATTTTGTCTGCGAAGCACGGGTTCCTCCGCCCTGATG    187
                     |  .||.|||.||||..|.||.||||||||.||.|||.|.....|.||||
BPUM_0775___y    140 C--AGACTGGCTGATCATATCAGCGAAGCATGGATTCTTAAAGGCAGATG    187

BSNT_01342___    188 ATCTCGTTTCGGGA-AATTACGATGTCACTTTTGG--CACCGGTCATCCG    234
                     |..|| .|||..|| |||||.|||||..|||||||  .||||  |||.|.
BPUM_0775___y    188 AAATC-ATTCATGAGAATTATGATGTGGCTTTTGGTATACCG--CATGCT    234

BSNT_01342___    235 GAAATC--ATGACAGC-----GGACGAGCTGAGCCGCCAATTTCACGAAA    277
                     |  |||  |||||| |     ||||.|..||||    ||||||||.||||
BPUM_0775___y    235 G--ATCAGATGACA-CGTGAAGGACTAAGTGAG----CAATTTCATGAAA    277

BSNT_01342___    278 AAGGCTTTT--CTG-ATATCGAAGAGCTAGTCATGCTTGGCGGAAAAAAA    324
                     ||  |.|.|  ||| |||| ||.||.|||||.||.||.||.|||||.|||
BPUM_0775___y    278 AA--CATCTCACTGCATAT-GATGAACTAGTGATACTAGGTGGAAAGAAA    324

BSNT_01342___    325 TATCGAAGCGT---------TCTA-AACGCCGTCATCGGAGAACACCAGC    364
                     |||||||..||         |.|| .||..|.|||||.||      ||||
BPUM_0775___y    325 TATCGAAAGGTGATCGATCCTTTATTACTTCCTCATCAGA------CAGC    368

BSNT_01342___    365 ---ATATCAGCTGGCCGCTATCATCTTACAAAGGCATAGGCTATATGCTC    411
                        .|||       ||.|||.|..|.||.||.||.||.|||||.|||||.
BPUM_0775___y    369 GATTTAT-------CCCCTAGCTCCATATAAGGGAATTGGCTACATGCTT    411

BSNT_01342___    412 CAAGCGCTGAACCGGGCTGTTGA-AGAAAAGCATGAACTGTAG-------    453
                     ||.|||.|.||.|..|||||||| |.|||||.| |||||...|       
BPUM_0775___y    412 CAGGCGTTAAAGCAAGCTGTTGAGACAAAAGTA-GAACTTCCGCCGCATA    460

BSNT_01342___    453 -----    453
                          
BPUM_0775___y    461 TTTAA    465


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