Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01342 and BPUM_0775
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:56
# Commandline: needle
# -asequence dna-align/BSNT_01342___yfjM.1.24716.seq
# -bsequence dna-align/BPUM_0775___yfjM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01342___yfjM-BPUM_0775___yfjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01342___yfjM-BPUM_0775___yfjM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01342___yfjM
# 2: BPUM_0775___yfjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 505
# Identity: 311/505 (61.6%)
# Similarity: 311/505 (61.6%)
# Gaps: 92/505 (18.2%)
# Score: 850.5
#
#
#=======================================
BSNT_01342___ 1 ATGAAACGGCTATGCATCATCCCCTGCGGCAAGAAAAAAATCTGGGACGT 50
.||||.||..||||.|||||.||.||.||...|||.|||||.||||||||
BPUM_0775___y 1 GTGAAGCGAGTATGTATCATTCCATGTGGGGCGAAGAAAATTTGGGACGT 50
BSNT_01342___ 51 CCAGCCTGATGCCGGG------CCGGTAAGAGCAGAGGA----CGCTTAT 90
||||||.||.||.||| |||| .|| ||.||||
BPUM_0775___y 51 CCAGCCAGAAGCAGGGAGCCAACCGG----------CGAACCTCGTTTAT 90
BSNT_01342___ 91 CTCAGCCCGTTTCATCAGGCGTGCG-AACGGTATGCGAAAGCAT--TTTT 137
.|.||.|||.|.||||| .|||.|| ||.|.|||||..||.|.| ||||
BPUM_0775___y 91 TTAAGTCCGCTGCATCA-ACGTACGAAAAGCTATGCCCAAACGTTCTTTT 139
BSNT_01342___ 138 CGATGAGTGGGTGATTTTGTCTGCGAAGCACGGGTTCCTCCGCCCTGATG 187
| .||.|||.||||..|.||.||||||||.||.|||.|.....|.||||
BPUM_0775___y 140 C--AGACTGGCTGATCATATCAGCGAAGCATGGATTCTTAAAGGCAGATG 187
BSNT_01342___ 188 ATCTCGTTTCGGGA-AATTACGATGTCACTTTTGG--CACCGGTCATCCG 234
|..|| .|||..|| |||||.|||||..||||||| .|||| |||.|.
BPUM_0775___y 188 AAATC-ATTCATGAGAATTATGATGTGGCTTTTGGTATACCG--CATGCT 234
BSNT_01342___ 235 GAAATC--ATGACAGC-----GGACGAGCTGAGCCGCCAATTTCACGAAA 277
| ||| |||||| | ||||.|..|||| ||||||||.||||
BPUM_0775___y 235 G--ATCAGATGACA-CGTGAAGGACTAAGTGAG----CAATTTCATGAAA 277
BSNT_01342___ 278 AAGGCTTTT--CTG-ATATCGAAGAGCTAGTCATGCTTGGCGGAAAAAAA 324
|| |.|.| ||| |||| ||.||.|||||.||.||.||.|||||.|||
BPUM_0775___y 278 AA--CATCTCACTGCATAT-GATGAACTAGTGATACTAGGTGGAAAGAAA 324
BSNT_01342___ 325 TATCGAAGCGT---------TCTA-AACGCCGTCATCGGAGAACACCAGC 364
|||||||..|| |.|| .||..|.|||||.|| ||||
BPUM_0775___y 325 TATCGAAAGGTGATCGATCCTTTATTACTTCCTCATCAGA------CAGC 368
BSNT_01342___ 365 ---ATATCAGCTGGCCGCTATCATCTTACAAAGGCATAGGCTATATGCTC 411
.||| ||.|||.|..|.||.||.||.||.|||||.|||||.
BPUM_0775___y 369 GATTTAT-------CCCCTAGCTCCATATAAGGGAATTGGCTACATGCTT 411
BSNT_01342___ 412 CAAGCGCTGAACCGGGCTGTTGA-AGAAAAGCATGAACTGTAG------- 453
||.|||.|.||.|..|||||||| |.|||||.| |||||...|
BPUM_0775___y 412 CAGGCGTTAAAGCAAGCTGTTGAGACAAAAGTA-GAACTTCCGCCGCATA 460
BSNT_01342___ 453 ----- 453
BPUM_0775___y 461 TTTAA 465
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