Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05208 and BPUM_0773
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_05208___yvdT.1.24716.seq
# -bsequence dna-align/BPUM_0773.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05208___yvdT-BPUM_0773.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05208___yvdT-BPUM_0773.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05208___yvdT
# 2: BPUM_0773
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 825
# Identity: 370/825 (44.8%)
# Similarity: 370/825 (44.8%)
# Gaps: 339/825 (41.1%)
# Score: 843.5
#
#
#=======================================
BSNT_05208___ 0 -------------------------------------------------- 0
BPUM_0773 1 ATGCTTGACCCTATTTACAGCTTATTCAGGCCTGCCCGCATCTATTCATC 50
BSNT_05208___ 0 -------------------------------------------------- 0
BPUM_0773 51 ACTTATTCTCCTATTCAATGACGAGAAACCCATATTGACAAATCGTCATT 100
BSNT_05208___ 1 -----------------------------------------------ATG 3
|||
BPUM_0773 101 TTTTAGATAAACTGACTGACATTCAGTCATTTAAGGTCGGTGATGATATG 150
BSNT_05208___ 4 CCAAAACAAACATCGGGCAAATATGAAAAAATTCTGCAGGCTGCCATAGA 53
.|.||||.| |||||.|||.|||..||||||||.||
BPUM_0773 151 TCGAAACGA---------------GAAAAGATTATGCTTGCTGCCATTGA 185
BSNT_05208___ 54 AGTGATTTCTGAAAAAGGCCTCGACAAAGCTTCTATTTCTGATATTGTCA 103
.|.|.||...||||||||..||||.|||.|..|.|||||.||||||||.|
BPUM_0773 186 CGCGTTTAAAGAAAAAGGAATCGAAAAAACAACCATTTCGGATATTGTGA 235
BSNT_05208___ 104 AAAAGGCCGGCACT-GCCCAAGGAACATTCTATTTGTATTTTTCATCTAA 152
||...||.|| |.| ||.||||||||.|.||||||.||||||.|.|| ||
BPUM_0773 236 AAGCAGCAGG-AGTCGCGCAAGGAACGTACTATTTATATTTTCCTTC-AA 283
BSNT_05208___ 153 AAATG-CCCTCATACCGGCCATTGCAGAAAATCT--TCTCAC-------- 191
||.|| |..||||.||.||.|||||||||.|||| ||||.|
BPUM_0773 284 AACTGTCTGTCATGCCTGCTATTGCAGAACATCTGATCTCGCAGATGGTG 333
BSNT_05208___ 192 ----CCATACACTTGATCAAATCAAAGGTAGGCT------GCATGGGGA- 230
||| |||| |||||.| || |||||.|||
BPUM_0773 334 CCTGCCA-----TTGA-------AAAGGAA--CTCACTCAGCATGCGGAT 369
BSNT_05208___ 231 -----CGA------AGATTTTTGGACCGTTTTAGATATATTAATTGATGA 269
||| ||| ||.|| ||.| |.||||
BPUM_0773 370 GTCCTCGATCAAGCAGA----TGCAC--TTGT-------TGAATT----- 401
BSNT_05208___ 270 GACAT-TTCTCATT----ACAGAACGCCATAAGGATATTATTGTCCTCTG 314
||| |||||.|| |.|.||..||.| ||..|..||| |||||
BPUM_0773 402 --CATCTTCTCTTTTACAAGACAATACCGT---GACGTCCTTG--CTCTG 444
BSNT_05208___ 315 --TTATTCCGG----GCTTGCGATCGACCACTCCATGGAAAAATGGG-AG 357
.||.||.|| || |||||..||.||.|..|.|| |||||| ||
BPUM_0773 445 ACCTACTCAGGTTTAGC-TGCGACGGAGCATTTAAAGG---AATGGGAAG 490
BSNT_05208___ 358 ACGATCTATCAGCCTTATTATTCCTG-------GCTT-----GAA----C 391
| .||.|||.||||...|||...||| |||| ||| |
BPUM_0773 491 A-TATTTATGAGCCGATTTACAACTGGGTCGCTGCTTTTTTAGAAAAAGC 539
BSNT_05208___ 392 AAATCA--TCAACAAGGCCATTGCAAACCATGAGGT---AACGGAAGGCA 436
|||.|| .|||.|.||.|..|||.|| | |||.|
BPUM_0773 540 AAAGCAGGACAAAAGGGTCCGTGCGAA--------TTTGAACTG------ 575
BSNT_05208___ 437 TCAATTCAAAATGGACGGCCAGAACGATTATC----AACTTGGTCGAGAA 482
||||.||| |.||||.|...|||||| .|||| |||
BPUM_0773 576 -----TCAATATG--CAGCCAAATTCATTATCGGTTTACTT------GAA 612
BSNT_05208___ 483 T--ACTGCGGAACGATTCTATATCGGATTT---GAACAAGAT---GAAAA 524
| .||||.||.|.|.|.|| |..|||| |||..|||| |||.|
BPUM_0773 613 TCGTCTGCTGAGCAAATGTA---CTTATTTACAGAAACAGATACAGAAGA 659
BSNT_05208___ 525 TGTTGAAGTGTATAAAAAG--------GAA--ATTTTCACTTTCTTAAAA 564
.|||..|.| |.||||| ||| |.|||| ||||| .|
BPUM_0773 660 GGTTCTAAT---TCAAAAGCGAGAGGTGAAGCAATTTC---TTCTT--TA 701
BSNT_05208___ 565 CGGA----GCTTAGGCACTGCTTAA 585
||.| ||.|||..||..|||||
BPUM_0773 702 CGCACTTGGCATAGAGACATCTTAA 726
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