Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05743 and BPUM_0761
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_05743___thrZ.1.24716.seq
# -bsequence dna-align/BPUM_0761___thrZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05743___thrZ-BPUM_0761___thrZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05743___thrZ-BPUM_0761___thrZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05743___thrZ
# 2: BPUM_0761___thrZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2033
# Identity: 1364/2033 (67.1%)
# Similarity: 1364/2033 (67.1%)
# Gaps: 217/2033 (10.7%)
# Score: 4319.0
#
#
#=======================================
BSNT_05743___ 1 ---------AT--GAGTAAACAT-GTACACATTCAGCTTCCGGACGGACA 38
|| |||.|||.|| ||..|.|||||..||||.||.|||.|
BPUM_0761___t 1 GTGTCAGTCATGAGAGAAAAAATGGTGAAGATTCAATTTCCAGATGGAAA 50
BSNT_05743___ 39 GATCAAGGAATATC-CGAAAGGCATCACAATCAAAGAAGCGGCTGGTTCT 87
|||.|||||.| || |...|||.|..||..||..|||.|..||....|.|
BPUM_0761___t 51 GATAAAGGAGT-TCTCTGCAGGTACGACTGTCGCAGATGTTGCCTCCTAT 99
BSNT_05743___ 88 ATCAGTTCCAGTCTGCAA--AAGAAGGCGGCTGCAGGTCAGGTCAATG-G 134
||.||..|.||..| || |||||.||.|..|||||..||.|||||| .
BPUM_0761___t 100 ATTAGCCCAAGCTT--AAGGAAGAAAGCAGTGGCAGGAAAGATCAATGAA 147
BSNT_05743___ 135 CAAGCTTGTTGATCTCAGTTTCA--AGCTGGAGGAG-GATGCTGAGCTTT 181
||| .|.||.|||.|||| ||| ||||||| .|| |||.||..|||.|
BPUM_0761___t 148 CAA-ATGGTCGATGTCAG--TCATCAGCTGGA-AAGCGATACTCGGCTGT 193
BSNT_05743___ 182 CGATTGTTACACTCGATTCACAAGAA-GGCTTGCAGGTGCTTCGCCACAC 230
|.|||||.||||||||||||.||||| |||||| |.|||||.||.||.||
BPUM_0761___t 194 CTATTGTCACACTCGATTCAAAAGAAGGGCTTG-AAGTGCTACGTCATAC 242
BSNT_05743___ 231 ATCAGCGCATGTGCTGGCCCAAGCAGTAAAACGGCTGTACGGCGAAGTGT 280
|||.||.||.||..|.||||||||.||.|||.||.|.||||||.|.||..
BPUM_0761___t 243 ATCTGCACACGTATTAGCCCAAGCTGTGAAAAGGTTATACGGCAATGTCA 292
BSNT_05743___ 281 CATTGGGGGTAGGGCCTGTGATTGAAGACGGCTTCTACTATGACATGAAG 330
||.|.||..|.||||||||.||||||.|.||.||.|||||||||||||||
BPUM_0761___t 293 CACTTGGAATCGGGCCTGTTATTGAAAATGGATTTTACTATGACATGAAG 342
BSNT_05743___ 331 CTGGGGAAAAGCTTGGCATCAGGAGACTTAGAG---------GCCATCGA 371
|||....||| |||.|.|.| ||||| ||.||.||
BPUM_0761___t 343 CTGAATCAAA------CATTAAGTG---TAGAGGATTTGGCTGCAATTGA 383
BSNT_05743___ 372 AAAAGAAATGAAAAACATAATAAATGAGAACCTTGAAATCAAACGTATAG 421
||||||||||.|||||||.||.||.|||||.|.|...|||.||.|.|..|
BPUM_0761___t 384 AAAAGAAATGGAAAACATCATCAACGAGAATCATCTTATCCAAAGAAAGG 433
BSNT_05743___ 422 AGGTTTCTTACGAAGAAGCTGATGAGCTGTTTGCACAAAAAGACGAGC-G 470
||.||||.|||.||||||||||...|.||||| |||| .
BPUM_0761___t 434 AGATTTCCTACAAAGAAGCTGAATCGATGTTT------------GAGCAT 471
BSNT_05743___ 471 GCTC-----AAGCTTGAGATTTTAAAGGATATTCCGCGCGGGGAGGATAT 515
|.|| |||||.||.||||||||...|.|.||....|..||.|..||
BPUM_0761___t 472 GATCCATATAAGCTGGATATTTTAAATCGTCTCCCATCTGAAGAAGCCAT 521
BSNT_05743___ 516 CACACTGTACCAGCAAGGGGAATTCGTTGACCTGTGCCGCGGGCCGCATC 565
||||.||||.||||||||.|||||..|.||..|.|||||||||||.|||.
BPUM_0761___t 522 CACAGTGTATCAGCAAGGTGAATTTATCGATTTATGCCGCGGGCCTCATT 571
BSNT_05743___ 566 TTCCTTCTACAGGGATGATCAAGGCGTTCAAACTGACAAGAGTATCAGGC 615
|.||||||||.||..|..|.|||.|.||.||.||.|||.|.||..||||.
BPUM_0761___t 572 TACCTTCTACTGGATTCGTAAAGTCATTTAAGCTAACACGTGTGGCAGGG 621
BSNT_05743___ 616 GCTTATTGGCGCGG----AGACAGCAAAAATGAAGTCCTGCAGCGGGTGT 661
|||||||||||.|| ||.|||||| ||.||..|||||||.||||
BPUM_0761___t 622 GCTTATTGGCGGGGTGATAGTCAGCAA----GATGTATTGCAGCGAGTGT 667
BSNT_05743___ 662 ACGGGGTTGCGTTTCAAAAGAAAAAAGATTTGGATGCGCACCTGCATATG 711
|.||.||.|||||||||.|...||||.|..|.|..|.|.|.||.|||.|.
BPUM_0761___t 668 ATGGTGTCGCGTTTCAACATCCAAAACAACTAGCCGAGTATCTTCATTTC 717
BSNT_05743___ 712 CTGGAAGAAGC-GGCAAAACGAGACCATCGCAAGCTCGGCAAACAGTTAG 760
.|||||||||| .|| |||||.||.||.||.||..|.||.|||||.|||.
BPUM_0761___t 718 ATGGAAGAAGCAAGC-AAACGTGATCACCGAAAATTAGGGAAACAATTAT 766
BSNT_05743___ 761 GGCTGTTTATGTTTTCTGAAGAAGCGCCGGGGATGCCGTTTTATTTGCCG 810
..|||||.||||||||.|||||||||||.||.||||||||||||||.||.
BPUM_0761___t 767 CTCTGTTCATGTTTTCAGAAGAAGCGCCAGGTATGCCGTTTTATTTACCA 816
BSNT_05743___ 811 AAAGGGCAGATTGTCCGCAATGAGCTGGAACG--CTTCTCGCGTGAACTG 858
|||.|.||||||||..|.|||||..| ||.| |||.||..|.|||.|.
BPUM_0761___t 817 AAAAGTCAGATTGTGAGAAATGAATT--AATGGCCTTTTCAAGAGAAGTT 864
BSNT_05743___ 859 C-AAACAAATGCCGGC--TACAATGAGGTGCGTACGCCGTTTATGATGAA 905
| ||.|||| || || ||..|.||.|||.|.||.||||||||||||||
BPUM_0761___t 865 CGAAGCAAA-GC--GCAATATGAAGAAGTGAGCACACCGTTTATGATGAA 911
BSNT_05743___ 906 TCAGCGGTTATGGGAGCAGTCAGGCCATTGGGACCATTATCGCGACAATA 955
.||...|.|||||||..|||||||.||.|||||.|||||||..||.||||
BPUM_0761___t 912 CCAAGAGCTATGGGAAAAGTCAGGTCACTGGGATCATTATCATGAAAATA 961
BSNT_05743___ 956 TGTACTTTTCAGAAGTGGATGATACAAGATTCGCAATGAAGCCGATGAAT 1005
||||.||.||||||||.|||.|||||||.||.||..|.||.||||||||.
BPUM_0761___t 962 TGTATTTCTCAGAAGTTGATCATACAAGCTTTGCTTTAAAACCGATGAAC 1011
BSNT_05743___ 1006 TGCCCCGGCCACATGCTCATCTTTAAAAACAGCCTGTATTCTTATCGGGA 1055
||.||.||.||.||||||||.||||||||||||.|.|.|||.|||.|.||
BPUM_0761___t 1012 TGTCCAGGACATATGCTCATGTTTAAAAACAGCTTATTTTCATATAGAGA 1061
BSNT_05743___ 1056 TCTGCCGATTCGCATGGCGGAATTCGGACAGGTGCATCGCCATGAATACA 1105
.||.|||||..|.|||||.||.||.||.|||||||||||.|||||||..|
BPUM_0761___t 1062 CCTTCCGATCAGAATGGCTGAGTTTGGTCAGGTGCATCGTCATGAATTTA 1111
BSNT_05743___ 1106 GCGGCGCTTTAAACGGAATGCTTC-GCGTTCGGACGTTCTGTCAGGATGA 1154
|||||||.|||||.|||.|| ||| |.||..|.||.||.||.||.|||||
BPUM_0761___t 1112 GCGGCGCATTAAATGGATTG-TTCAGGGTCAGAACATTTTGCCAAGATGA 1160
BSNT_05743___ 1155 CGCCCATATTTTCGTTCGGGAG--GATCAGATTGAGAG-TGAGATCAAAG 1201
.||||||||||| ||.|.||| |||||.||||| || |||.||||||
BPUM_0761___t 1161 TGCCCATATTTT--TTTGAGAGAAGATCAAATTGA-AGCTGAAATCAAA- 1206
BSNT_05743___ 1202 AAGCG---------ATTCGGCTGATTGATGAGGTATATCGGACATTTGGT 1242
|| |||.| |||||.|.||.||||||||||||||.
BPUM_0761___t 1207 ---CGGATTTTCCAATTAG-----TTGATCATGTGTATCGGACATTTGGG 1248
BSNT_05743___ 1243 TTCGAGTATTCAGTTGAGCTTTCGACTCGCCCGGAGGATTCATTAGGCAA 1292
||.|||||.||.||.||.||.||.|||||.||.||..|..|.|||||..|
BPUM_0761___t 1249 TTTGAGTACTCTGTGGAACTATCTACTCGTCCAGAAAAGGCGTTAGGGGA 1298
BSNT_05743___ 1293 TGACAGCC-TTTGGGAAGCGTCGGAACGTGCCTTAGCAC------GCGTC 1335
||| .||| |||||||....||.||| |.||||| ..||.
BPUM_0761___t 1299 TGA-TGCCATTTGGGATATTTCTGAA------TCAGCACTAAAGAATGTG 1341
BSNT_05743___ 1336 CTTGAGGAGCTTGGC-----CTCTCTTATGAGATCAATGAAGGCGATGGG 1380
||||| |.||| .||..||||.||.|.||||||||.||||||
BPUM_0761___t 1342 CTTGA-----TCGGCTAAAGGTCGATTATCAGCTAAATGAAGGAGATGGG 1386
BSNT_05743___ 1381 GCGTTTTACGGGCCGAAAATTGATTTCCACATAAAAGATGCCCTGAAACG 1430
||.|||||.||.|||||.||.|||||.||.||.|||||.|||.||.|.||
BPUM_0761___t 1387 GCATTTTATGGCCCGAAGATCGATTTTCATATTAAAGACGCCTTGCAGCG 1436
BSNT_05743___ 1431 GAGCCACCAATGCGCGACTATTCAGCTTGATTTTCAAATGCCGGAAAAAT 1480
.|||||.||.|||||.||.||.|||||.||||||||||||||.||.||||
BPUM_0761___t 1437 TAGCCATCAGTGCGCCACAATCCAGCTAGATTTTCAAATGCCTGAGAAAT 1486
BSNT_05743___ 1481 TTGATTTAACATATATCAACGAACACAATGAAAAGGTTCGTCCCGTTGTC 1530
|||||||||||||||||||.|||.|.|||||||||||.||.||.|||||.
BPUM_0761___t 1487 TTGATTTAACATATATCAATGAAAAGAATGAAAAGGTACGGCCTGTTGTG 1536
BSNT_05743___ 1531 ATCCACAGAGCGGTTTTCGGCTCAATCGACCGTTTCTTCGGCATTTTGAT 1580
||.|||||.||..|||||||.||..|.||.||||||.|.||||||.|.||
BPUM_0761___t 1537 ATTCACAGTGCCATTTTCGGTTCTCTTGATCGTTTCCTTGGCATTCTCAT 1586
BSNT_05743___ 1581 CGAGCATTACGGCGGGGCTTTTCCAGTCTGGCTCGCACCGCTCCAGGTTC 1630
.|||||||.||..||.||.||.||..|.|||||.|||||..|.||.||.|
BPUM_0761___t 1587 TGAGCATTTCGCTGGCGCCTTCCCGTTATGGCTGGCACCAGTGCAAGTAC 1636
BSNT_05743___ 1631 AAATCATACCGGTTTCTCACGTTCACTTAGACTATTGCAGAAAGGTGCAG 1680
|||||||.||.||.||..|..|||||.|.||..|||||....|||||||
BPUM_0761___t 1637 AAATCATTCCTGTCTCAAAGATTCACCTTGATCATTGCCTCGAGGTGCA- 1685
BSNT_05743___ 1681 GCGGAGC--TGAAGCAGG--CGGGGATAAGAGCCGGCATTGATGAGCGCA 1726
|.||| |.|||.|.| | ||.||.||||.|...||.|||||.||..
BPUM_0761___t 1686 --GCAGCAATTAAGAAAGATC-GGCATCAGAGTCACAATCGATGAACGGG 1732
BSNT_05743___ 1727 ATGAGAAGCTGGGCTATAAAATCAGAGAATCGCAGGTGCAGAAAATCCCG 1776
||||.|||||.|||||||||||.||||||.|.||..||||.||||||||.
BPUM_0761___t 1733 ATGAAAAGCTCGGCTATAAAATGAGAGAAGCACAAATGCAAAAAATCCCT 1782
BSNT_05743___ 1777 TACGT-GCTGGTGCTTGGAGAT-------------------CA-TGAGGA 1805
||..| ||| ||..||||.||| || |||..|
BPUM_0761___t 1783 TATATCGCT-GTCATTGGCGATACAGAAATGCAAGAAAAAACACTGAATA 1831
BSNT_05743___ 1806 GCAG-GAGAATGCGGTAAACGTCCGCCGA-TTCGGACATCAGCAG---AG 1850
.||| .||.|||..|.||| || ||| |.|.||||.| |.
BPUM_0761___t 1832 TCAGACAGCATGGAGAAAA--------GACTTC--AAACCAGCTGTCTAT 1871
BSNT_05743___ 1851 TGAACACGTTC------------CTTTCCAAACTTTTAAAGATA-AAC-- 1885
|||..||.||| ||...|||| |.||||||| |||
BPUM_0761___t 1872 TGATGACTTTCAACACATGGCGGCTCAACAAA---TAAAAGATAGAACAG 1918
BSNT_05743___ 1886 TTG-TCAAACAGGTGGAAAATCGAGGCATGTAG 1917
||| |||||.|.|.
BPUM_0761___t 1919 TTGCTCAAATATGA------------------- 1932
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