Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01329 and BPUM_0746
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_01329.1.24716.seq
# -bsequence dna-align/BPUM_0746___yfkA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01329-BPUM_0746___yfkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01329-BPUM_0746___yfkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01329
# 2: BPUM_0746___yfkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1155
# Identity: 841/1155 (72.8%)
# Similarity: 841/1155 (72.8%)
# Gaps: 66/1155 ( 5.7%)
# Score: 2952.0
#
#
#=======================================
BSNT_01329 1 ATGACACAAAACACGAAG--CTGCGTCCGATTACGCCCGAGTTTGACCCT 48
||||..|||||.|| || ||.|||||||||||.||.|..|.|||||||
BPUM_0746___y 1 ATGAACCAAAAAAC--AGCACTTCGTCCGATTACACCTGCATATGACCCT 48
BSNT_01329 49 TGGGAAGCCTATATGGATGTTGACCAATACGGAGACATGCAGCTGACAAA 98
||||||||||||.|.|||||..|..|.||||||||.|||.||||||||||
BPUM_0746___y 49 TGGGAAGCCTATCTCGATGTGCAGGATTACGGAGAGATGAAGCTGACAAA 98
BSNT_01329 99 CGTTGAATTCACAACAACGACACTGTGCAATATGAGATGCGAGCATTGTG 148
..|||||||.||||||||.||..||||.||.||||||||.||||||||||
BPUM_0746___y 99 TATTGAATTTACAACAACAACGTTGTGTAACATGAGATGTGAGCATTGTG 148
BSNT_01329 149 CTGTAGGCTATACATTGCAGCCTAAAGACCCGAATGCTCTGCCAATAGAT 198
|.||.||||||||.||||||||.||||||||||||||.||||||.|.|||
BPUM_0746___y 149 CGGTCGGCTATACTTTGCAGCCAAAAGACCCGAATGCACTGCCACTTGAT 198
BSNT_01329 199 CTTCTG-TTAAAACGGC---TGGAGGAAATCCCGCGCCTCAGATCCATCA 244
.|.||| || ||.| |.||.|||.|.||||.|.|..|.|||||||
BPUM_0746___y 199 TTACTGCTT----CGCCGTTTAGATGAAGTTCCGCTCTTGCGTTCCATCA 244
BSNT_01329 245 GCATCACAGGCGGAGAGCCGATGCTTTCGTTGAAATCAGTAAAAGAATAT 294
|.||.||||||||||||||.||||||||..|.|||||.||....||||||
BPUM_0746___y 245 GTATTACAGGCGGAGAGCCAATGCTTTCTCTCAAATCTGTGCGGGAATAT 294
BSNT_01329 295 GTTGTTCCTTTATTGAAATATGCCCATGAACGGGGTGTGCGGACACAAAT 344
||.||.||||||.|.||.||||||||.|||||.||.||.||.|||||.||
BPUM_0746___y 295 GTCGTCCCTTTACTAAAGTATGCCCACGAACGCGGCGTCCGTACACAGAT 344
BSNT_01329 345 TAATTCAAATCTGACCCTCGACATCGAGCGGTACGAATGGATCATTCCGT 394
.||||||||..|.||.||.||..|.|.|||.||.|||...||||||||.|
BPUM_0746___y 345 CAATTCAAACTTAACACTTGATTTGGCGCGATATGAAGAAATCATTCCAT 394
BSNT_01329 395 ATCTCGATGTGCTACATATTTCTCATAACTGGGGTACAGTTGAAGATTTT 444
|..|.|||||.||.||.||.||.|||||||||||.||.||.|||||.|||
BPUM_0746___y 395 ACTTAGATGTCCTTCACATCTCACATAACTGGGGAACTGTCGAAGAGTTT 444
BSNT_01329 445 GCTGAAA---TCGGCTTTGCCATGATGGACAGAAAACCGACCTTCGAACA 491
|| || ||||.|||||.||||||||.||||||||.|||||.||.||
BPUM_0746___y 445 GC---AACGGTCGGTTTTGCGATGATGGATAGAAAACCAACCTTTGAGCA 491
BSNT_01329 492 GCGCGCG-CGCTATTTTGAAAAA----ATGATCGAAAACAGCC--GCACG 534
|||||.| ...||||| || |||||.|||||.|||| |||
BPUM_0746___y 492 GCGCGAGAAATTATTT-----AACCGCATGATTGAAAATAGCCAGGCA-- 534
BSNT_01329 535 CTCGTGGATGCCGGAGTAATGGTATCTGCGGAAACGATGCTGAACAAACG 584
||.||..|.||.||.||.|..||.|||||.|||||.||||||||.|||||
BPUM_0746___y 535 CTTGTTAAAGCAGGTGTGACCGTTTCTGCTGAAACCATGCTGAATAAACG 584
BSNT_01329 585 AACACTTCCGCATATTGAGCATATTCACCGCCAAATCACAGAAGATATGA 634
.||.|||||..|||||||.||.||.|||||.|||||....||.||.||||
BPUM_0746___y 585 CACGCTTCCATATATTGAACACATCCACCGGCAAATTGTGGAGGAAATGA 634
BSNT_01329 635 AATGTCAGCGTCACGAGGTCCACCCAATGTATCCAAGCGATTTCGCAAGC 684
||||.|||||.|||||.||.|||||.|||||||||||.|||||.||.|||
BPUM_0746___y 635 AATGCCAGCGCCACGAAGTGCACCCGATGTATCCAAGTGATTTTGCCAGC 684
BSNT_01329 685 GCTCTTGAATC-----CCTCAGCCTGAAAGAGATGAGACAGGCCATTCAC 729
||.|||||||| |.|.| |.|.|| |||.|..|.||.|||||.
BPUM_0746___y 685 GCCCTTGAATCATTGACGTTA--CCGCAA---ATGCGTGATGCGATTCAT 729
BSNT_01329 730 CGCTTGCTGGATATTCGTGATGAAAATACGTGGATGCTGTTCGGAACGCT 779
|...||||.||.|||||||||.||.||||.|||||||||||.||.||..|
BPUM_0746___y 730 CAACTGCTTGACATTCGTGATCAAGATACATGGATGCTGTTTGGCACCTT 779
BSNT_01329 780 GCCGTTTTATGCCTGCAGTCCGGACGAAGACGACCAAAAGCTGCTTCGC- 828
|||.||||||.|.||||||.|.||.|||||.|||| |||..||.|.|
BPUM_0746___y 780 GCCTTTTTATTCTTGCAGTACAGATGAAGAAGACC---AGCGCCTCCTCA 826
BSNT_01329 829 --CGGCTTCGCGCGGC--GAAAAAC--GTCACAGTGCGAAATGACCCTGA 872
||..| |||.| ||.|||| ||||||||.||||||||||||||
BPUM_0746___y 827 AACGATT----GCGTCAGGAGAAACTTGTCACAGTACGAAATGACCCTGA 872
BSNT_01329 873 CGGCCGGTCCCGCCTGAATGTGAACATTTTCGACGGAAACATTATCGTGA 922
.||.||.||.||.|||||||||||.|||||.||.||.||.|||||.||||
BPUM_0746___y 873 TGGACGCTCACGGCTGAATGTGAATATTTTTGATGGGAATATTATTGTGA 922
BSNT_01329 923 CCGATTTCGGTGATACCCCGCCGCTTGGCAACATTCAGACGGACAGCCTC 972
|.||.||.||||||||.||||||||.||.||.|||.||||.||.|...|.
BPUM_0746___y 923 CAGACTTTGGTGATACACCGCCGCTAGGAAATATTGAGACCGATACATTG 972
BSNT_01329 973 CCTTCCGCCTAT----GAAAAGTGGAGAGAGACCAAGCTTGCGAAAGAAC 1018
|..||.||.||| || ||||..||.||.||..|.||.|||||.|
BPUM_0746___y 973 CAATCTGCTTATACTCGA----TGGATGGACACAAAATTAGCAAAAGAGC 1018
BSNT_01329 1019 TAAGTTGCCACTGCCCGAATGTCCGGTGCCTCGGACCGAATGTTCTTGTC 1068
|.|.|||.||.||.||.|..||.|..|||||.||.||||||||||||||.
BPUM_0746___y 1019 TGAATTGTCATTGTCCAAGCGTACAATGCCTTGGTCCGAATGTTCTTGTG 1068
BSNT_01329 1069 AAAAACAGTTATTATCAGGATACAGACTTCACAAAACGTCA-AGCCAGGA 1117
||||||||.||||||||.|||...||.||.||....|| || |||||||.
BPUM_0746___y 1069 AAAAACAGCTATTATCAAGATGTTGATTTTACTTCTCG-CACAGCCAGGG 1117
BSNT_01329 1118 GTTAG 1122
|.||.
BPUM_0746___y 1118 GGTAA 1122
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