Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01321 and BPUM_0737
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_01321___yfkI.1.24716.seq
# -bsequence dna-align/BPUM_0737___yfkI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01321___yfkI-BPUM_0737___yfkI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01321___yfkI-BPUM_0737___yfkI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01321___yfkI
# 2: BPUM_0737___yfkI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 392
# Identity: 194/392 (49.5%)
# Similarity: 194/392 (49.5%)
# Gaps: 130/392 (33.2%)
# Score: 369.0
#
#
#=======================================
BSNT_01321___ 1 ----ATGAACAACGAACGTTTAA----TGCTGAAAGGGATATTTCTCGGA 42
|.|||.|| || |.|| ||||...||| |..||||..|
BPUM_0737___y 1 ATGGAAGAAAAA--AA---TCAAATTGTGCTCCGAGG---AGCTCTCTTA 42
BSNT_01321___ 43 GCTGCGGCAGGCGCGGCGTTATCACTGC---------TCCATAAGCCGAC 83
|.|||.|| ..|||||| ||.||| |.||| ||||
BPUM_0737___y 43 GGTGCAGC--TTGCGGCG----CATTGCTGACTTTATTTCAT----CGAC 82
BSNT_01321___ 84 ------------------AAGAC-------AGGCGTG-CGGCATGAGATG 107
||||| |.||.|| |.|||..||.||
BPUM_0737___y 83 CAACAAGAATTGCACTCAAAGACAAATGGAATGCCTGCCAGCAAAAGCTG 132
BSNT_01321___ 108 G-------CTGACATG---CAAG-----CATAAACTTTCACTGTATAAAA 142
| |||.||.| |||| .||.|||| ||.||.|||
BPUM_0737___y 133 GAAGAGGTCTGCCAAGAGCCAAGTAGGATATCAACT-----TGCATGAAA 177
BSNT_01321___ 143 GCAATCCGGAGCTGTTAAAAAACACTGTTATCACAAAAGTGGATGAGGCC 192
|.|| ||.|| .||.|||| .|||..|.|||.||.
BPUM_0737___y 178 GAAA-----AGATG-GAAGAAAC------------GAAGCAGCTGATGCG 209
BSNT_01321___ 193 AAAAAGCTCGCCCAAACGCTTTCAAAGGAAGTCGACTTTGTGAACCAGCA 242
||.|..|| ||.|.|.||| ||| .|||.|.||..|.||
BPUM_0737___y 210 AACAGTCT----CAGATGATTT--------GTC--ATTTTTAAATGAACA 245
BSNT_01321___ 243 GGTGAAAGAGCTGAAGAAAACAACGCCGCAAGTG-AT--GGAACTCGTGC 289
.||.||..||.|.|||.|||||| ||.||||.| || |.||.|..||
BPUM_0737___y 246 AGTCAATCAGTTAAAGGAAACAA--CCCCAAGGGTATTAGAAATTATTG- 292
BSNT_01321___ 290 AAGAAACGAAAGAGCATTTTTCAA---AAA-------AATGA 321
|||||||.||.||.|| .|||||| ||| |.|||
BPUM_0737___y 293 AAGAAACAAAGGATCA-CTTTCAATCGAAACAGACAGATTGA 333
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