Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01320 and BPUM_0736
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_01320___yfkJ.1.24716.seq
# -bsequence dna-align/BPUM_0736___yfkJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01320___yfkJ-BPUM_0736___yfkJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01320___yfkJ-BPUM_0736___yfkJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01320___yfkJ
# 2: BPUM_0736___yfkJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 523
# Identity: 314/523 (60.0%)
# Similarity: 314/523 (60.0%)
# Gaps: 104/523 (19.9%)
# Score: 873.5
#
#
#=======================================
BSNT_01320___ 1 ATGATAAGCGTGTTATTTGTTTGTTTAGGTAACATTTGCCGGTCTCCGAT 50
|||||....||||||||.||.|||.|.||.||.||||||.||||.|||||
BPUM_0736___y 1 ATGATTCATGTGTTATTCGTGTGTCTTGGCAATATTTGCAGGTCACCGAT 50
BSNT_01320___ 51 GGCGGAAGCGATTTTTCGGGACCTGGCAGCCAAAAAAG-----GATTAGA 95
|||.||.||.||.|||.| .||||||| ||| ||
BPUM_0736___y 51 GGCAGAGGCCATGTTTAG------------AAAAAAAGTAGAAGAT--GA 86
BSNT_01320___ 96 GGGGAAAATCAAG------GCG---GACTCAGCCGGTATTGGCGGCTGGC 136
||||...|.|.|| |.| ||.|||||.|||||||||||.|||
BPUM_0736___y 87 GGGGCTTAGCGAGCACTTTGTGATTGATTCAGCAGGTATTGGCGGATGG- 135
BSNT_01320___ 137 ACATC--GGCAACCCCCCGCATGAGGGAACGCAGGAGATATTGCGCAG-- 182
|||| ||||..||.||||||||.||||||| ||.| ||.|
BPUM_0736___y 136 -CATCAAGGCAGTCCTCCGCATGAAGGAACGC----GAAA----GCTGCT 176
BSNT_01320___ 183 ------AGAAGGAATCAGCTTTGATGGCATGCTGGCGCGTCAAGTCAGCG 226
|.||||.|||||||.|||.||.|||...||..|.|||.|||
BPUM_0736___y 177 TGATGAAAAAGGCATCAGCTATGAAGGAATGTCCGCAAGACAAATCA--- 223
BSNT_01320___ 227 AACAGGATCTGGACGATTTT---------GATTACATCATTGCAATGGAT 267
.|||| ||.||..|| ||.||.||||||||.||||||
BPUM_0736___y 224 ---TGGAT---GAAGACATTACAACATACGACTATATCATTGCGATGGAT 267
BSNT_01320___ 268 GCAGAAAATATCGGAAGTCTCAGAAGCATGGCGGGTTTT----AAAAACA 313
||.||||||.|.||....||..|.||.||.||.||.|.| ||.|.||
BPUM_0736___y 268 GCTGAAAATGTTGGGGCACTTCGCAGTATAGCCGGCTATGGGAAACATCA 317
BSNT_01320___ 314 CCTCGCATATCAAAAGGC-----TCTTGGACTATGTTGAAGATTCAGATC 358
|.| ||| .||| |||| ||.|.|||.|||||....||||
BPUM_0736___y 318 CTT----TAT----TGGCCGTCTTCTT-GATTTTGTAGAAGACGACGATC 358
BSNT_01320___ 359 TGGCTGACGTTCCCGATCCTTACTACACAGGGAATTTTGAAGAAGTC--T 406
..|.|||.||.||.||||||||.|||||.||.||.|||||.|||||| |
BPUM_0736___y 359 GAGATGATGTGCCAGATCCTTATTACACTGGTAACTTTGAGGAAGTCCAT 408
BSNT_01320___ 407 GCCAATTAATCAAATCGGGCTGTGAGCATCTGCTTG-CGTCTATTCAAAA 455
| |||||||..||.|.||...|||.|.| |..||| |||.|.| ||
BPUM_0736___y 409 G--AATTAATTGAAACAGGAATTGACCGT-TTTTTGACGTATGT----AA 451
BSNT_01320___ 456 AGAAAAACAATTGTGA------- 471
|||||.|.|| .||
BPUM_0736___y 452 AGAAAGAGAA---CGACCTTTAA 471
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