Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01296 and BPUM_0735

See Amino acid alignment / Visit BSNT_01296 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:53
# Commandline: needle
#    -asequence dna-align/BSNT_01296___yflA.1.24716.seq
#    -bsequence dna-align/BPUM_0735___yflA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01296___yflA-BPUM_0735___yflA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01296___yflA-BPUM_0735___yflA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01296___yflA
# 2: BPUM_0735___yflA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1679
# Identity:     849/1679 (50.6%)
# Similarity:   849/1679 (50.6%)
# Gaps:         535/1679 (31.9%)
# Score: 1762.0
# 
#
#=======================================

BSNT_01296___      1 ATGTTTTTCCATCTATGGGAAATGAT-----------TCATAAACGAAAA     39
                                   ||||| |||.||           ||| .|||||   
BPUM_0735___y      1 --------------ATGGG-AATAATTGAGCAGTTTGTCA-CAACGA---     31

BSNT_01296___     40 AAGGGTGATGGGATGGAACGACTATTAGTATGGATAGAGTATATATCTGA     89
                                   .||||.|.|.||                        
BPUM_0735___y     32 --------------TGAACAATTTTT------------------------     43

BSNT_01296___     90 TTGGCTGTGGGGTCCGCCGCTAATCATCCTGCTGACGGGGACGGGGTTGT    139
                          |||||||.||.||.||..|.||..||.|....||.||.||..|.|
BPUM_0735___y     44 -----TGTGGGGGCCTCCCCTGTTGATTTTGATTGTTGGTACTGGAATAT     88

BSNT_01296___    140 ATTTCACTATTTTGCTGAAAGGTT-------TTCA---------ATTTCG    173
                     |..|||| .|||.||      |||       ||||         |.|||.
BPUM_0735___y     89 ACCTCAC-CTTTCGC------GTTCTCTTCATTCAAATTAGATTACTTCC    131

BSNT_01296___    174 CTATCCTTTATA-----CATTTTCAAACAGACAATCGGCAGCGTAGGAAA    218
                     .|||.|||||.|     |.||||||||   ||||            ||.|
BPUM_0735___y    132 TTATTCTTTAAAACTCGCTTTTTCAAA---ACAA------------GACA    166

BSNT_01296___    219 AAA--ACCGAA-GGGAGAGGGCACAGTCACACCGCTTCAGGCATTGACCT    265
                     |||  .|.||| ||||.|...|.||.|        |.||.||.||.|...
BPUM_0735___y    167 AAATGTCAGAAGGGGATATTTCCCATT--------TCCAAGCGTTAATGA    208

BSNT_01296___    266 CAGCCCTCAGTTCAACGATCGGTGCAGCGAACATTGTCGGTGTGCCTGCC    315
                     |.||.||...|.||||..|||||.|||..||.||.||.||||||.|..|.
BPUM_0735___y    209 CGGCTCTTGCTGCAACTGTCGGTACAGGAAATATCGTAGGTGTGGCATCG    258

BSNT_01296___    316 GCTATTATGTTTGGAGGGCCGGGAGCGGTTTTTTGGATGTGGCTGATTGC    365
                     |||.||||....||.||.||.||.||.||.||.||||||||   |.||||
BPUM_0735___y    259 GCTGTTATAGCGGGTGGACCTGGTGCAGTATTCTGGATGTG---GTTTGC    305

BSNT_01296___    366 C---TTATTTGCCATGGCGATTAAGTTTTCTGAGAG-TGTTCTTGCTGTT    411
                     |   ||.||.|..|||||.|..||||||.|.|| || ||||||||||||.
BPUM_0735___y    306 CGCATTTTTCGGGATGGCCACCAAGTTTGCAGA-AGCTGTTCTTGCTGTA    354

BSNT_01296___    412 CATTACAGAGAAAAAAATGAGCAGGGTGAATACGTC-GGGGGACCGATGT    460
                     .|.|||||.|..|||||.||..|.||.||| |.||| ||.|||||.||||
BPUM_0735___y    355 AAATACAGGGTCAAAAACGAAAAAGGCGAA-ATGTCTGGCGGACCTATGT    403

BSNT_01296___    461 ATTACATA----AC-----AAAAGGGCTGCGCATGAAATGGCTCGGCGTA    501
                     ||||..||    ||     ||||        || |||||||||.||.||.
BPUM_0735___y    404 ATTATTTAGAGCACGGGTTAAAA--------CA-GAAATGGCTAGGGGTG    444

BSNT_01296___    502 TTCTTCTCTGTT----------GCGCTGATTGTGGAGCTGATCCCCAGCA    541
                     .|.||..|||||          ||||||..|.|||    |||   |.|||
BPUM_0735___y    445 CTATTTGCTGTTTTCGGTGCCAGCGCTGCCTTTGG----GAT---CGGCA    487

BSNT_01296___    542 TTATGGTTCAGGGAAATTCGGTTTCAGTCTCGCTTGCTGAGACGTTTTC-    590
                     .|.||||.|||...|||||..||||||    ||.|..|||     .||| 
BPUM_0735___y    488 ATCTGGTACAGTCTAATTCCATTTCAG----GCGTTATGA-----ATTCT    528

BSNT_01296___    591 ---TTTCAA----TAAAAT---ATACTCAGGAATCGGAATTGC-GTTTTT    629
                        ||||||    .||.||   .||  ||||.|||...|||.| |.||||
BPUM_0735___y    529 ACTTTTCAAATTCCAACATGGGTTA--CAGGTATCATCATTACAGCTTTT    576

BSNT_01296___    630 GATCGGCT-TAGTGGTGATAGGAGGGGT--AAAGCGGATCGGAAAAGTAA    676
                       .||||| |.|||.|..||||.||..|  |||||  ||.||.|..||.|
BPUM_0735___y    577 --ACGGCTCTTGTGATTTTAGGCGGAATTAAAAGC--ATTGGCAGGGTCA    622

BSNT_01296___    677 CAGAGTTTGTCGTACCTCTTATGGC--------AGGGGCATACGCGGGAG    718
                     ||....||.|.|||||..|.|||||        | .|.|||..|      
BPUM_0735___y    623 CATCTATTTTTGTACCGGTCATGGCTTTATTTTA-CGTCATTTG------    665

BSNT_01296___    719 CCGGTCTCCTGATTGTTCTCATGAAT-CT-ATCATCAGTGCC-GGCGTTT    765
                      ||||||..|.|||.||.|.|||||| || |||.|  ||.|| ||||   
BPUM_0735___y    666 -CGGTCTGATCATTCTTGTTATGAATGCTGATCTT--GTTCCAGGCG---    709

BSNT_01296___    766 TTCTCTCTCG------TTTTTTCAAATGCGTTTACC--TCTTCTTCAGCA    807
                         |..|||      ||||.|||.||||.||||||  ||     .|||.
BPUM_0735___y    710 ----CAGTCGGGCTTATTTTCTCAGATGCCTTTACCGGTC-----AAGCC    750

BSNT_01296___    808 GTTGGAGGGTTCGCAGGTGCTGC-GTTGGCGGAAAC---CGTTCGCTGGG    853
                     |         |.|||||||.||| .||||    .||   |.|||||||||
BPUM_0735___y    751 G---------TGGCAGGTGGTGCAATTGG----GACTGTCATTCGCTGGG    787

BSNT_01296___    854 GATTTGCCCGCGGGCTTTATTCTAATGAAGCCGGAATGGGAACAGCCCCG    903
                     |..|.||.||.||..|.|.|||.||||||||.||..|.||..||||.||.
BPUM_0735___y    788 GTGTGGCACGAGGAGTATTTTCCAATGAAGCAGGTCTTGGGTCAGCACCA    837

BSNT_01296___    904 ATTGCACATGCGGCAGCAATGACTGATCAT-CCTGTGCGGCAAGGGTTTT    952
                     ||.||...||||||.||.|..||.||| || ||||..||.|||  |.|.|
BPUM_0735___y    838 ATCGCGGCTGCGGCTGCGAAAACGGAT-ATGCCTGCCCGTCAA--GCTCT    884

BSNT_01296___    953 GGTCTGTGAT--CGGCATTG-TCATTGACACCTTGATCATCTGCACGACC    999
                     .||||.| ||  ||..|.|| |.|||||.||..|.||    ||       
BPUM_0735___y    885 CGTCTCT-ATGACGCAAGTGTTTATTGATACAATTAT----TG-------    922

BSNT_01296___   1000 ACCGCTTTTGTCGTTCTTGCATCTGG---------TGT-CTGG-------   1032
                           |||   |||||..|| ||||         ||| .|||       
BPUM_0735___y    923 ------TTT---GTTCTATCA-CTGGCATTACCATTGTGATGGCAGATAT    962

BSNT_01296___   1033 -------ACAGGGAAGAACGCCTCAATTGACCCGGCAGCACTGACGACG-   1074
                            ||||.||||         |.|||      .||||||||..|| 
BPUM_0735___y    963 GTATTTAACAGTGAAG---------AGTGA------TGCACTGACCTCGT    997

BSNT_01296___   1075 --------GCTGCATTTCAGCATTATTTCGGTTC---TGGCGGAGGGTAC   1113
                             ||| ||.|||        .|.|||.|   ||||..|    ||
BPUM_0735___y    998 TATCCTTTGCT-CACTTC--------CTTGGTCCAGTTGGCTCA----AC   1034

BSNT_01296___   1114 TTCGTT-------TCGGTTTCCCTAGTCTTCTTTGTCGTA-TCAACCATT   1155
                       |.||       ||||    .||..||||.|||| |.|| ||.|||||.
BPUM_0735___y   1035 --CATTGTGGCAATCGG----GCTGCTCTTGTTTG-CCTATTCCACCATC   1077

BSNT_01296___   1156 AT--GGTTGTCATTTTTTACGGCGTAAAGCAAGCTGAATTTC-TGTTCGG   1202
                     ||  |.|.|||  .|.|||.||||.|||  |.|||   ||.| |.||   
BPUM_0735___y   1078 ATTGGCTGGTC--CTATTATGGCGAAAA--ATGCT---TTACATATT---   1117

BSNT_01296___   1203 GCGGCTGGC--AGGA----CACGTGATTAAAT------TCGTTTATTTAG   1240
                          ||||  ||||    .||||.||..|.|      ||||.|.|.|..
BPUM_0735___y   1118 -----TGGCGAAGGATTCGTACGTCATGTATTATCGTATCGTGTTTGTGA   1162

BSNT_01296___   1241 CGGCTATTATCATAGGTGCCG-----CAGGCGGAGCAAAAGCCATT----   1281
                     .||||.|..|..|.|||||||     .|        |||.|.| ||    
BPUM_0735___y   1163 TGGCTGTCTTTTTCGGTGCCGTGTTTAA--------AAATGAC-TTCGTC   1203

BSNT_01296___   1282 TGGGGT-------------TTTTTGGACTTAGCATTGGCTTTTATTCTCG   1318
                     ||||||             |...||||||.|    |||          ||
BPUM_0735___y   1204 TGGGGTGTGGCAGATATGCTCAATGGACTGA----TGG----------CG   1239

BSNT_01296___   1319 -TTCCAAATGTGATTGCGCT-----GTTGTTATTGAGCAGAAAGGT----   1358
                      |||||||..|.||.|.|||     ||  ||||    |||  .|||    
BPUM_0735___y   1240 ATTCCAAACTTAATCGGGCTCATCGGT--TTAT----CAG--GGGTGGTC   1281

BSNT_01296___   1359 ------------AAAAGCGCTGTACACCGAATTCTTT----ACATCTGAA   1392
                                 |||            |||| ||.||    |.|| |.||
BPUM_0735___y   1282 GTATTTGAATCCAAA------------CGAA-TCATTGATAAGAT-TAAA   1317

BSNT_01296___   1393 CAGTACTACCTGAAAGATATAAGGAAAACAAAACAGAATC-CTGT-TTAT   1440
                     |||.|      ||||     |||||.||.||     .||| |||| |.||
BPUM_0735___y   1318 CAGGA------GAAA-----AAGGAGAAGAA-----TATCTCTGTGTCAT   1351

BSNT_01296___   1441 C--AAACAAAAGAAGCTAAAAACTCCTAG   1467
                     |  ||                        
BPUM_0735___y   1352 CTTAA------------------------   1356


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