Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01296 and BPUM_0735
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:53
# Commandline: needle
# -asequence dna-align/BSNT_01296___yflA.1.24716.seq
# -bsequence dna-align/BPUM_0735___yflA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01296___yflA-BPUM_0735___yflA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01296___yflA-BPUM_0735___yflA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01296___yflA
# 2: BPUM_0735___yflA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1679
# Identity: 849/1679 (50.6%)
# Similarity: 849/1679 (50.6%)
# Gaps: 535/1679 (31.9%)
# Score: 1762.0
#
#
#=======================================
BSNT_01296___ 1 ATGTTTTTCCATCTATGGGAAATGAT-----------TCATAAACGAAAA 39
||||| |||.|| ||| .|||||
BPUM_0735___y 1 --------------ATGGG-AATAATTGAGCAGTTTGTCA-CAACGA--- 31
BSNT_01296___ 40 AAGGGTGATGGGATGGAACGACTATTAGTATGGATAGAGTATATATCTGA 89
.||||.|.|.||
BPUM_0735___y 32 --------------TGAACAATTTTT------------------------ 43
BSNT_01296___ 90 TTGGCTGTGGGGTCCGCCGCTAATCATCCTGCTGACGGGGACGGGGTTGT 139
|||||||.||.||.||..|.||..||.|....||.||.||..|.|
BPUM_0735___y 44 -----TGTGGGGGCCTCCCCTGTTGATTTTGATTGTTGGTACTGGAATAT 88
BSNT_01296___ 140 ATTTCACTATTTTGCTGAAAGGTT-------TTCA---------ATTTCG 173
|..|||| .|||.|| ||| |||| |.|||.
BPUM_0735___y 89 ACCTCAC-CTTTCGC------GTTCTCTTCATTCAAATTAGATTACTTCC 131
BSNT_01296___ 174 CTATCCTTTATA-----CATTTTCAAACAGACAATCGGCAGCGTAGGAAA 218
.|||.|||||.| |.|||||||| |||| ||.|
BPUM_0735___y 132 TTATTCTTTAAAACTCGCTTTTTCAAA---ACAA------------GACA 166
BSNT_01296___ 219 AAA--ACCGAA-GGGAGAGGGCACAGTCACACCGCTTCAGGCATTGACCT 265
||| .|.||| ||||.|...|.||.| |.||.||.||.|...
BPUM_0735___y 167 AAATGTCAGAAGGGGATATTTCCCATT--------TCCAAGCGTTAATGA 208
BSNT_01296___ 266 CAGCCCTCAGTTCAACGATCGGTGCAGCGAACATTGTCGGTGTGCCTGCC 315
|.||.||...|.||||..|||||.|||..||.||.||.||||||.|..|.
BPUM_0735___y 209 CGGCTCTTGCTGCAACTGTCGGTACAGGAAATATCGTAGGTGTGGCATCG 258
BSNT_01296___ 316 GCTATTATGTTTGGAGGGCCGGGAGCGGTTTTTTGGATGTGGCTGATTGC 365
|||.||||....||.||.||.||.||.||.||.|||||||| |.||||
BPUM_0735___y 259 GCTGTTATAGCGGGTGGACCTGGTGCAGTATTCTGGATGTG---GTTTGC 305
BSNT_01296___ 366 C---TTATTTGCCATGGCGATTAAGTTTTCTGAGAG-TGTTCTTGCTGTT 411
| ||.||.|..|||||.|..||||||.|.|| || ||||||||||||.
BPUM_0735___y 306 CGCATTTTTCGGGATGGCCACCAAGTTTGCAGA-AGCTGTTCTTGCTGTA 354
BSNT_01296___ 412 CATTACAGAGAAAAAAATGAGCAGGGTGAATACGTC-GGGGGACCGATGT 460
.|.|||||.|..|||||.||..|.||.||| |.||| ||.|||||.||||
BPUM_0735___y 355 AAATACAGGGTCAAAAACGAAAAAGGCGAA-ATGTCTGGCGGACCTATGT 403
BSNT_01296___ 461 ATTACATA----AC-----AAAAGGGCTGCGCATGAAATGGCTCGGCGTA 501
||||..|| || |||| || |||||||||.||.||.
BPUM_0735___y 404 ATTATTTAGAGCACGGGTTAAAA--------CA-GAAATGGCTAGGGGTG 444
BSNT_01296___ 502 TTCTTCTCTGTT----------GCGCTGATTGTGGAGCTGATCCCCAGCA 541
.|.||..||||| ||||||..|.||| ||| |.|||
BPUM_0735___y 445 CTATTTGCTGTTTTCGGTGCCAGCGCTGCCTTTGG----GAT---CGGCA 487
BSNT_01296___ 542 TTATGGTTCAGGGAAATTCGGTTTCAGTCTCGCTTGCTGAGACGTTTTC- 590
.|.||||.|||...|||||..|||||| ||.|..||| .|||
BPUM_0735___y 488 ATCTGGTACAGTCTAATTCCATTTCAG----GCGTTATGA-----ATTCT 528
BSNT_01296___ 591 ---TTTCAA----TAAAAT---ATACTCAGGAATCGGAATTGC-GTTTTT 629
|||||| .||.|| .|| ||||.|||...|||.| |.||||
BPUM_0735___y 529 ACTTTTCAAATTCCAACATGGGTTA--CAGGTATCATCATTACAGCTTTT 576
BSNT_01296___ 630 GATCGGCT-TAGTGGTGATAGGAGGGGT--AAAGCGGATCGGAAAAGTAA 676
.||||| |.|||.|..||||.||..| ||||| ||.||.|..||.|
BPUM_0735___y 577 --ACGGCTCTTGTGATTTTAGGCGGAATTAAAAGC--ATTGGCAGGGTCA 622
BSNT_01296___ 677 CAGAGTTTGTCGTACCTCTTATGGC--------AGGGGCATACGCGGGAG 718
||....||.|.|||||..|.||||| | .|.|||..|
BPUM_0735___y 623 CATCTATTTTTGTACCGGTCATGGCTTTATTTTA-CGTCATTTG------ 665
BSNT_01296___ 719 CCGGTCTCCTGATTGTTCTCATGAAT-CT-ATCATCAGTGCC-GGCGTTT 765
||||||..|.|||.||.|.|||||| || |||.| ||.|| ||||
BPUM_0735___y 666 -CGGTCTGATCATTCTTGTTATGAATGCTGATCTT--GTTCCAGGCG--- 709
BSNT_01296___ 766 TTCTCTCTCG------TTTTTTCAAATGCGTTTACC--TCTTCTTCAGCA 807
|..||| ||||.|||.||||.|||||| || .|||.
BPUM_0735___y 710 ----CAGTCGGGCTTATTTTCTCAGATGCCTTTACCGGTC-----AAGCC 750
BSNT_01296___ 808 GTTGGAGGGTTCGCAGGTGCTGC-GTTGGCGGAAAC---CGTTCGCTGGG 853
| |.|||||||.||| .|||| .|| |.|||||||||
BPUM_0735___y 751 G---------TGGCAGGTGGTGCAATTGG----GACTGTCATTCGCTGGG 787
BSNT_01296___ 854 GATTTGCCCGCGGGCTTTATTCTAATGAAGCCGGAATGGGAACAGCCCCG 903
|..|.||.||.||..|.|.|||.||||||||.||..|.||..||||.||.
BPUM_0735___y 788 GTGTGGCACGAGGAGTATTTTCCAATGAAGCAGGTCTTGGGTCAGCACCA 837
BSNT_01296___ 904 ATTGCACATGCGGCAGCAATGACTGATCAT-CCTGTGCGGCAAGGGTTTT 952
||.||...||||||.||.|..||.||| || ||||..||.||| |.|.|
BPUM_0735___y 838 ATCGCGGCTGCGGCTGCGAAAACGGAT-ATGCCTGCCCGTCAA--GCTCT 884
BSNT_01296___ 953 GGTCTGTGAT--CGGCATTG-TCATTGACACCTTGATCATCTGCACGACC 999
.||||.| || ||..|.|| |.|||||.||..|.|| ||
BPUM_0735___y 885 CGTCTCT-ATGACGCAAGTGTTTATTGATACAATTAT----TG------- 922
BSNT_01296___ 1000 ACCGCTTTTGTCGTTCTTGCATCTGG---------TGT-CTGG------- 1032
||| |||||..|| |||| ||| .|||
BPUM_0735___y 923 ------TTT---GTTCTATCA-CTGGCATTACCATTGTGATGGCAGATAT 962
BSNT_01296___ 1033 -------ACAGGGAAGAACGCCTCAATTGACCCGGCAGCACTGACGACG- 1074
||||.|||| |.||| .||||||||..||
BPUM_0735___y 963 GTATTTAACAGTGAAG---------AGTGA------TGCACTGACCTCGT 997
BSNT_01296___ 1075 --------GCTGCATTTCAGCATTATTTCGGTTC---TGGCGGAGGGTAC 1113
||| ||.||| .|.|||.| ||||..| ||
BPUM_0735___y 998 TATCCTTTGCT-CACTTC--------CTTGGTCCAGTTGGCTCA----AC 1034
BSNT_01296___ 1114 TTCGTT-------TCGGTTTCCCTAGTCTTCTTTGTCGTA-TCAACCATT 1155
|.|| |||| .||..||||.|||| |.|| ||.|||||.
BPUM_0735___y 1035 --CATTGTGGCAATCGG----GCTGCTCTTGTTTG-CCTATTCCACCATC 1077
BSNT_01296___ 1156 AT--GGTTGTCATTTTTTACGGCGTAAAGCAAGCTGAATTTC-TGTTCGG 1202
|| |.|.||| .|.|||.||||.||| |.||| ||.| |.||
BPUM_0735___y 1078 ATTGGCTGGTC--CTATTATGGCGAAAA--ATGCT---TTACATATT--- 1117
BSNT_01296___ 1203 GCGGCTGGC--AGGA----CACGTGATTAAAT------TCGTTTATTTAG 1240
|||| |||| .||||.||..|.| ||||.|.|.|..
BPUM_0735___y 1118 -----TGGCGAAGGATTCGTACGTCATGTATTATCGTATCGTGTTTGTGA 1162
BSNT_01296___ 1241 CGGCTATTATCATAGGTGCCG-----CAGGCGGAGCAAAAGCCATT---- 1281
.||||.|..|..|.||||||| .| |||.|.| ||
BPUM_0735___y 1163 TGGCTGTCTTTTTCGGTGCCGTGTTTAA--------AAATGAC-TTCGTC 1203
BSNT_01296___ 1282 TGGGGT-------------TTTTTGGACTTAGCATTGGCTTTTATTCTCG 1318
|||||| |...||||||.| ||| ||
BPUM_0735___y 1204 TGGGGTGTGGCAGATATGCTCAATGGACTGA----TGG----------CG 1239
BSNT_01296___ 1319 -TTCCAAATGTGATTGCGCT-----GTTGTTATTGAGCAGAAAGGT---- 1358
|||||||..|.||.|.||| || |||| ||| .|||
BPUM_0735___y 1240 ATTCCAAACTTAATCGGGCTCATCGGT--TTAT----CAG--GGGTGGTC 1281
BSNT_01296___ 1359 ------------AAAAGCGCTGTACACCGAATTCTTT----ACATCTGAA 1392
||| |||| ||.|| |.|| |.||
BPUM_0735___y 1282 GTATTTGAATCCAAA------------CGAA-TCATTGATAAGAT-TAAA 1317
BSNT_01296___ 1393 CAGTACTACCTGAAAGATATAAGGAAAACAAAACAGAATC-CTGT-TTAT 1440
|||.| |||| |||||.||.|| .||| |||| |.||
BPUM_0735___y 1318 CAGGA------GAAA-----AAGGAGAAGAA-----TATCTCTGTGTCAT 1351
BSNT_01296___ 1441 C--AAACAAAAGAAGCTAAAAACTCCTAG 1467
| ||
BPUM_0735___y 1352 CTTAA------------------------ 1356
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