Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01302 and BPUM_0729
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:53
# Commandline: needle
# -asequence dna-align/BSNT_01302___treA.1.24716.seq
# -bsequence dna-align/BPUM_0729___treA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01302___treA-BPUM_0729___treA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01302___treA-BPUM_0729___treA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01302___treA
# 2: BPUM_0729___treA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1802
# Identity: 1205/1802 (66.9%)
# Similarity: 1205/1802 (66.9%)
# Gaps: 217/1802 (12.0%)
# Score: 3741.0
#
#
#=======================================
BSNT_01302___ 1 ATGAA--AACAGAACAAACG--CCATGGTGGAAAAAAGCTGTGGTTTATC 46
.|||| |||| |||.|||| ||.||||||||||||||.|||||.||||
BPUM_0729___t 1 TTGAAACAACA-AACTAACGAACCGTGGTGGAAAAAAGCGGTGGTCTATC 49
BSNT_01302___ 47 AAATTTATCCGAAAAGCTTTAACGATACGACAGGAAACGGTGTCGGCGAT 96
|||||||||||||.||||||...|||||.|||||....|||...||||||
BPUM_0729___t 50 AAATTTATCCGAAGAGCTTTTTAGATACAACAGGCTCAGGTACAGGCGAT 99
BSNT_01302___ 97 CTGAACGGCATTATTGAAAAGCTTGATTA-CTTAAAAACACTTCAGGTGG 145
.|.||.||..|.|...|||||||.||||| .|||||.| .||...||.||
BPUM_0729___t 100 ATCAATGGTGTGACAAAAAAGCTCGATTATATTAAAGA-GCTGGGGGCGG 148
BSNT_01302___ 146 ATGTG-CTTTGGCTGACGCCGATTTATGATTCTCCGCAGCATGATAATGG 194
|| || .|||||||.|||||.||.|||||.||.|||||.|||||.||.||
BPUM_0729___t 149 AT-TGTATTTGGCTCACGCCAATGTATGAGTCCCCGCAACATGACAACGG 197
BSNT_01302___ 195 GTACGATATTCGTGATTATTACTCGATTTATCC-TGA---ATACGGAACG 240
.||.||||||.||||||| ||| |...|||| ||| .|||||.||.
BPUM_0729___t 198 CTATGATATTAGTGATTA-TAC---AAAAATCCATGACATGTACGGCACA 243
BSNT_01302___ 241 ATGGAGGATTTTGAGCGGCTAGTGTCCGAAGCACATAAAAGAG----ACC 286
||||.|||||||||.|...|..||...|||||.|||.|..||| ||
BPUM_0729___t 244 ATGGCGGATTTTGAACACATGCTGAAAGAAGCCCATGATCGAGGTATAC- 292
BSNT_01302___ 287 TGAAAGTCGTCATGGATCTTGTTGTCAATCATACGTCAA----CAGAGCA 332
.||||.||||||||.|.|..|||||||||||.||.| | ||
BPUM_0729___t 293 ---GAGTCATCATGGATTTAGCCGTCAATCATACATCCATTTTC----CA 335
BSNT_01302___ 333 CAAATGGTTT---------CGCGAGGCGATCTCTTCAATAGACAGCCCGT 373
.||.|||||| |||||| ||||..||.|..||.|
BPUM_0729___t 336 TAAGTGGTTTCAAGCATCACGCGAG---------TCAAAGGATAATCCTT 376
BSNT_01302___ 374 ACCGTGATTTTTATATATGGAAAGA-CCCACAGGAAAACGGTTCTGTTCC 422
|.||.||||.||||||.|||||.|| |||| |||.|.||||.|| .||
BPUM_0729___t 377 ATCGAGATTATTATATTTGGAAGGAGCCCA-AGGCAGACGGCTC---CCC 422
BSNT_01302___ 423 GACGA---ACTGGGAATCGAAATTCGGCGGCTCGGCATGGGAGCTTGACG 469
|.|.| |.|||.|.||.|||||.|||||..|.|||||||||.|.||.|
BPUM_0729___t 423 GCCAAATGATTGGCAGTCAAAATTTGGCGGTCCAGCATGGGAGTTAGATG 472
BSNT_01302___ 470 AAGCATCAGGCCAATACTATTTGCATCTGTTTGATGTGACACAGGCTGAT 519
|||.|.||||..|.||.|||.|.|||.|.|..|||||.||.||.||.|||
BPUM_0729___t 473 AAGTAACAGGTGAGTATTATCTTCATTTATACGATGTCACCCAAGCGGAT 522
BSNT_01302___ 520 TTGAATTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGACATGATGCA 569
.|.|||||||||||.||.|||||..|.|.|||.||.||||||||.|||||
BPUM_0729___t 523 CTCAATTGGGAAAAGGATGAGGTGCGCAGGCAAGTATATGACATCATGCA 572
BSNT_01302___ 570 TTTTTGGTTTGAAAAGGGAATAGACGGCTTTAGGCTTGATGTCATCAACC 619
.||||||||||||||||||||.||.||.||.|||||.||||||||||||.
BPUM_0729___t 573 CTTTTGGTTTGAAAAGGGAATTGATGGATTCAGGCTGGATGTCATCAACA 622
BSNT_01302___ 620 TGATTTCTAAAGATCAGCGCTT-TCCGA--ATGC-GGA--------GGAA 657
..||.||.|||||||||||||| |..|| |||| ||| ..||
BPUM_0729___t 623 ACATCTCAAAAGATCAGCGCTTCTTAGATGATGCTGGACAGTCTGTACAA 672
BSNT_01302___ 658 GGCGACGGCCGCTCTTTTTACACTGATGGGCCGCGGGTGCACGAATTTCT 707
||.||||||||....|.|||.||.|||||.||..|..|.||.||.|||||
BPUM_0729___t 673 GGAGACGGCCGGATGTATTATACGGATGGTCCAAGAATTCATGAGTTTCT 722
BSNT_01302___ 708 GCATGAAATGAACGAAAAGGTGTTTTCGCATTACGACAGCATGACGGTCG 757
|||.|||||||||.||.||||.||||||.|.||.|||||||||||.||||
BPUM_0729___t 723 GCACGAAATGAACCAAGAGGTTTTTTCGAAATATGACAGCATGACCGTCG 772
BSNT_01302___ 758 GTGAGATGTCTTCAAC---AACCGTAGACCACTGTATCCGGTATACGAAT 804
|.||.||||||||||| .|.||.|| ||||.||.||||||||.|..
BPUM_0729___t 773 GAGAAATGTCTTCAACGAATATCGCAG---ACTGCATTCGGTATACAAGA 819
BSNT_01302___ 805 CCTGA----CAATAAAGAACTTGATATGACATTCAGCTTCCATCATCTCA 850
||.|| | |.||.||.||||||||.||.|..||.||||||.|.|
BPUM_0729___t 820 CCGGATCGGC----AGGAGCTGGATATGACGTTTAATTTTCATCATTTAA 865
BSNT_01302___ 851 AGGTTGACTATCCTAACGGCGAAAAATGGGCCTTGGCGCCGTTTGATTTT 900
||||.||.|||||.||.||.||||||||||||.|.||.||.|||||||||
BPUM_0729___t 866 AGGTCGATTATCCAAATGGAGAAAAATGGGCCATCGCACCATTTGATTTT 915
BSNT_01302___ 901 -TTGAAGCTGAAGGAGATCCTATCTGACTGGCAAACGGGGATGCACGCAG 949
.|||| .|||||..|||.||.|||||.|||||.|||...|||||.|..|
BPUM_0729___t 916 CATGAA-TTGAAGTCGATTCTGTCTGAGTGGCAGACGAAAATGCATGAGG 964
BSNT_01302___ 950 GAGGAGGATGGAACGCTCTGTTCTGGTGCAATCATGATCAGCCGCGCGTT 999
|.||.||.|||||.||.||.||||||||.||||||||||||||.||..|.
BPUM_0729___t 965 GTGGCGGCTGGAATGCGCTCTTCTGGTGTAATCATGATCAGCCACGTATC 1014
BSNT_01302___ 1000 GTATCAAGATATGGAGATGATG--GCG---CAT-ATAGGGTGAAATCGGC 1043
||.||||||||.||.|||||.| .|| ||| | |.||||.||
BPUM_0729___t 1015 GTCTCAAGATACGGTGATGACGAAACGTACCATCA------GCAATCAGC 1058
BSNT_01302___ 1044 GAAAATGCTTGCTACGGCCATTCATTTGATGCAGGGCACGCCTTATATTT 1093
|||.|||||.||.||..||||||||.|.|||||.||.|||||.|||||||
BPUM_0729___t 1059 GAAGATGCTGGCGACCACCATTCATCTCATGCAAGGGACGCCATATATTT 1108
BSNT_01302___ 1094 ATCAGGGCGAGGAGCTGGGGATGACGAATCCGAAGTTCACTGACATAAGC 1143
||||.||.||.|||.|.||.||||.||||||..||||....|||||....
BPUM_0729___t 1109 ATCAAGGTGAAGAGATTGGTATGAAGAATCCTCAGTTTGAGGACATCTTG 1158
BSNT_01302___ 1144 TCCTATCGGGATGTCGAATCGCTGAACATGTATCACGC----CTTTAA-- 1187
||.||.||.|||.|.|||||.||.||.||||||.|.|| |||.||
BPUM_0729___t 1159 TCTTACCGTGATATTGAATCACTCAATATGTATGAAGCCATGCTTGAAAA 1208
BSNT_01302___ 1188 --GGAA---AAAGGAATGGCTGATCAAGATATTACAGCCATTTTACAGGC 1232
|||| ||||||| .|||...|| |||||||||||||.
BPUM_0729___t 1209 AGGGAAATCAAAGGAA--------GAAGCGCTT---GCCATTTTACAGGT 1247
BSNT_01302___ 1233 GAAATCCCGTGACAATTCCAGAACCCCCGTTCAGTGGGATGCTACGGAAA 1282
.||.||..|.||.|||.|.|||||.||..|.|||||| .|..|.||||
BPUM_0729___t 1248 CAAGTCAAGAGATAATGCGAGAACTCCGATGCAGTGG---ACCTCAGAAA 1294
BSNT_01302___ 1283 ATG---GC-GGTTTTACAACGGGCACACCATGGATACCGGTTG---CAGG 1325
| | || |||||..|||..||.|||||||||| ||| |||.
BPUM_0729___t 1295 A-GAACGCAGGTTTCTCAAAAGGAACACCATGGA------TTGAGCCAGC 1337
BSNT_01302___ 1326 AAATTACCGGGAAA--TCAATGCTGAAGCGGCGCTGAGGGATCAGAATTC 1373
.|||.|| ||.| ||| |..|||||..|..|.|..||..|||..||
BPUM_0729___t 1338 CAATAAC---GACATTTCA--GTCGAAGCTTCATTAAAAGACAAGACGTC 1382
BSNT_01302___ 1374 GGTGTTTTACCATTATCAA--AAATTGATTCAGATTCGCAAAATGTA--T 1419
..|.||.|||||||||||| ...||| |.||.|.||.||| |.| |
BPUM_0729___t 1383 TATTTTCTACCATTATCAAGCCCTTTG--TAAGCTGCGTAAA--GAACTT 1428
BSNT_01302___ 1420 GACATTGTGACAGAGGG------TACGTATGAGATA---ATTGCAAAGGA 1460
|||.|..|.|||.|.|| |||.| || .|.||| ||
BPUM_0729___t 1429 GACGTGATCACATATGGAAGCTTTACCT------TACTCTTAGCA---GA 1469
BSNT_01302___ 1461 TGACCCGAACATTTTTGCGTATCTTAGACACGGCAGCAATGAAAAGCTGC 1510
|||||||||..|||||||.|||.|.|||.|..||.|..|.||.|||||.|
BPUM_0729___t 1470 TGACCCGAAGGTTTTTGCTTATGTGAGAGAAAGCGGTGAGGAGAAGCTTC 1519
BSNT_01302___ 1511 TCGTGATCAATAATTTTTACG--GGACAGAGGCGGCCTTTACACTGCCGG 1558
|.|||||||||.|.||||||| || ||||.|||.||||||.||.||.|
BPUM_0729___t 1520 TTGTGATCAATCACTTTTACGCAGG--AGAGACGGACTTTACGCTTCCTG 1567
BSNT_01302___ 1559 ACTCTTTAGC-------GCCT---GACGA-ATGGAAGGCAG-AGGTGCTG 1596
| |.||| |.|| ||||| |||||.|| | |.||||||
BPUM_0729___t 1568 A----TGAGCTTGTGCAGGCTGTAGACGAGATGGAGGG--GCAAGTGCTG 1611
BSNT_01302___ 1597 TTGACGA---ACGATGAAGCAAGGGAAGGGCTTCAGAACATG-------- 1635
||..|.| |.||.||.|||..||||| |.|||
BPUM_0729___t 1612 TTATCCAATTATGAGGATGCACCGGAAG---------ATATGAAAGGATT 1652
BSNT_01302___ 1636 -ACGCTTCGCCCGTATGAGTCCATTGTTTATCGTTTAATGAAACCGTGTT 1684
|||.|.||.||.||||||||.||.|||||||.|||||..|||| |.|
BPUM_0729___t 1653 TACGTTGCGTCCATATGAGTCAATCGTTTATCATTTAACCAAAC---GCT 1699
BSNT_01302___ 1685 AA 1686
|.
BPUM_0729___t 1700 AG 1701
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