Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01291 and BPUM_0724

See Amino acid alignment / Visit BSNT_01291 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:52
# Commandline: needle
#    -asequence dna-align/BSNT_01291___yflE.1.24716.seq
#    -bsequence dna-align/BPUM_0724___yflE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01291___yflE-BPUM_0724___yflE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01291___yflE-BPUM_0724___yflE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01291___yflE
# 2: BPUM_0724___yflE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2064
# Identity:    1433/2064 (69.4%)
# Similarity:  1433/2064 (69.4%)
# Gaps:         198/2064 ( 9.6%)
# Score: 4773.5
# 
#
#=======================================

BSNT_01291___      1 ATGAAAACATTTATAAAAGAAAGAGGACTGGCCTTCTTCTTAATCGCGGT     50
                     ||||||||||||||..||.||.||||.||.|.||||||..|.||.||.|.
BPUM_0724___y      1 ATGAAAACATTTATTCAAAAACGAGGCCTCGGCTTCTTTGTTATTGCAGC     50

BSNT_01291___     51 CGTCCTGTTATGGATCAAAACGTATGTCAG------TTATGTCCTGAACT     94
                     |.||.|..|.|||.||||||||||| ||.|      |.||    ||||.|
BPUM_0724___y     51 CATCTTACTTTGGCTCAAAACGTAT-TCGGCGTATTTAAT----TGAATT     95

BSNT_01291___     95 TCAACTTAGGAATAGACAACACGATACAAAAAATATTGCTTTTTGTGAAT    144
                     |.||||| ||.|||...||...|.|.||..|.||.||||||||.||||||
BPUM_0724___y     96 TAAACTT-GGTATATCAAATGTGCTTCAGCATATTTTGCTTTTCGTGAAT    144

BSNT_01291___    145 CCTCTTAGCTCAAGCTTGTTCTTTCTTGGCTTTGGACTCTTGTTCAAGAA    194
                     |||.|||||||.||||||||||||||||||||||...|.|||||||||||
BPUM_0724___y    145 CCTATTAGCTCCAGCTTGTTCTTTCTTGGCTTTGCTTTATTGTTCAAGAA    194

BSNT_01291___    195 AAAATTACAGCAGACAGCCATTATAGTGATTCATTTTTTAATGTCTTTTT    244
                     |||||..||||...|.||.||.||.||||||||||||||.||||||||||
BPUM_0724___y    195 AAAATGGCAGCCTGCCGCTATCATTGTGATTCATTTTTTCATGTCTTTTT    244

BSNT_01291___    245 TACTGTACGCCAACATTGTGTACTACAGATTTTTCAATGATTTTATTACA    294
                     ||||.|||||.|||||.||||||||..||||.||||||||.|||||.||.
BPUM_0724___y    245 TACTATACGCAAACATCGTGTACTATCGATTCTTCAATGACTTTATCACG    294

BSNT_01291___    295 ATTCCGGTCATTATGCAGGCTAAAACAAACGGCGGCCAACTCGGTGACAG    344
                     .|.||...|.|.||||||||...|||.||.|||||.|||.|.|||||.||
BPUM_0724___y    295 CTGCCTACCGTGATGCAGGCAGGAACGAATGGCGGACAATTAGGTGATAG    344

BSNT_01291___    345 CGCATTTTCGCTGATGAGACCGACTGACGCCTTTTACTTTATCGATACGA    394
                     .||||||||.||.|||.|...||||||....|||||||||||.|||||.|
BPUM_0724___y    345 TGCATTTTCACTCATGCGTTGGACTGATATGTTTTACTTTATGGATACCA    394

BSNT_01291___    395 TCATCCTGATCAT-CTTG------GCGATCAA-----AGTAAACAAG---    429
                     ||||..|||||.| ||.|      || ||.||     ||.|||||||   
BPUM_0724___y    395 TCATTTTGATCGTACTCGCAGTCCGC-ATGAAAAAGCAGCAAACAAGTAC    443

BSNT_01291___    430 ----------CCTGCCGAAACGTCAAGCAAAAAATCGTTCCGAATTATTT    469
                               ||||...|||.|||      |||||||||..||.|..|..
BPUM_0724___y    444 AGCTACTGTACCTGTTCAAAAGTC------AAAATCGTTTAGACTCGTCC    487

BSNT_01291___    470 TTGCGTCTTCAATTCTTGTGTTCT---TGATCAACCTGGCAGTTGCGGA-    515
                     |||.||||||   |.||||..|||   ||||.||..|.|..|.|||.|| 
BPUM_0724___y    488 TTGTGTCTTC---TGTTGTCATCTTTGTGATGAATTTAGTCGCTGCAGAG    534

BSNT_01291___    516 ATCAGACCGTCCTGAATTGCTGACAAGATCATTCGACCGGAACTATCTTG    565
                     || .||.|||||.||..|..|..|||||||.||.|||||.||.|||.|.|
BPUM_0724___y    535 AT-TGATCGTCCAGAGCTTTTATCAAGATCGTTTGACCGCAATTATTTAG    583

BSNT_01291___    566 TGAAATACTTGGGAACATACAATTTCACGATTTATGACGCTGTACAGAAT    615
                     |||||||.||.||..|.||.||.||.||..|.|.|||.||..|.||.|||
BPUM_0724___y    584 TGAAATATTTAGGTGCTTATAACTTTACAGTGTTTGATGCCATTCAAAAT    633

BSNT_01291___    616 ATCAAGTCCAACAGCCAGCGCGCGCTTGCCGATTCCAGCGACGTGACGGA    665
                     .|.||.||.|||||||||||.||.||.||..||||.|..||||||||.||
BPUM_0724___y    634 GTGAAATCAAACAGCCAGCGTGCTCTGGCAAATTCAAATGACGTGACAGA    683

BSNT_01291___    666 AGTAGAAAACTACATGAAAGCCAATTACGATGTGCCGA--ATAAC---GT    710
                     .|||||.|||||..|.|||||.||     ..||||.||  .||||   |.
BPUM_0724___y    684 TGTAGAGAACTATTTAAAAGCGAA-----CAGTGCTGATCCTAACCCTGC    728

BSNT_01291___    711 GTATTTCGGCAAAGCGGAAGGAAAAAACGTCATTTACG-TTTCACTTGAA    759
                     .||||.|||.||||||.||||.|..|||||.| ||||| ||||.||||||
BPUM_0724___y    729 TTATTACGGGAAAGCGAAAGGCATGAACGTGA-TTACGATTTCTCTTGAA    777

BSNT_01291___    760 TCTTTGCAGTCATTTATCATCGACTATAAAATTGACGGCAAAGAAGTGAC    809
                     |||.||||....|||.||||.||.||.|||.|..||||.|||||||||||
BPUM_0724___y    778 TCTCTGCAAAACTTTGTCATTGATTACAAAGTAAACGGAAAAGAAGTGAC    827

BSNT_01291___    810 ACCGTTCTTAAATAAACTGGCACATGATAACGAAACGTTCTACTTTGATA    859
                     .||.|||.|.|||..|.|||||||.||.|||.|||||||.||||||||||
BPUM_0724___y    828 GCCTTTCCTTAATTCATTGGCACACGACAACAAAACGTTTTACTTTGATA    877

BSNT_01291___    860 ACTTTTTCCACCAAACGGGACAAGGCAAAACATCTGATGCTGAATTTATG    909
                     ||||.|||||.|||||.||.|||||.|||||.||||||||||||||||||
BPUM_0724___y    878 ACTTCTTCCATCAAACAGGTCAAGGAAAAACGTCTGATGCTGAATTTATG    927

BSNT_01291___    910 ATGGAAAACTCT---CTGTACCCGCTGGCTCAAGGTTCAGTTTTCGTAAA    956
                     |||||.|   ||   ||.|.|||..|..|.|||||.||.|||||..|.||
BPUM_0724___y    928 ATGGATA---CTGGGCTATTCCCATTATCACAAGGCTCTGTTTTTATTAA    974

BSNT_01291___    957 CAAAGCGCAAAACACGCTGCAATCCGTTCC-GGCGATTCTGAAGTCTAAG   1005
                     ||||||||||||||||...|||.||.|||| ||| ||.||||||   |||
BPUM_0724___y    975 CAAAGCGCAAAACACGTATCAAGCCATTCCTGGC-ATCCTGAAG---AAG   1020

BSNT_01291___   1006 AAT---TACACATCTGCTACTTTCCACGGGAACACGCAGACGTTCTGGAA   1052
                     .||   |||||.||.||....||||||||.||.||..|.||.||||||||
BPUM_0724___y   1021 GATCAGTACACGTCAGCAGAATTCCACGGCAATACAAAAACCTTCTGGAA   1070

BSNT_01291___   1053 CCGTAACGAAATGTACAAAGCGGAAGGCAT-TGATAAATTCTTTGATTCT   1101
                     ||||||.|||||||..||..||...|| || |||.|.|||.|..||||||
BPUM_0724___y   1071 CCGTAATGAAATGTTTAAGTCGTTTGG-ATATGACAGATTTTACGATTCT   1119

BSNT_01291___   1102 GCCTACTATGACATGAACGAAGAAAACACGAAAAACTACGGCATGAAAGA   1151
                     |..|||||.||.|||||.||..||.|.|||||.|||||.||..|||||||
BPUM_0724___y   1120 GAGTACTACGATATGAATGAGCAAGATACGAAGAACTATGGGTTGAAAGA   1169

BSNT_01291___   1152 CAAACCGTTCTTCAAAGAATCAATGCCGCTGCTGGAAAGCCTGCCGCAGC   1201
                     ||||||.||||||||||||||.|||||..||||.||||.|.|...|||||
BPUM_0724___y   1170 CAAACCATTCTTCAAAGAATCTATGCCAATGCTTGAAAACTTAAAGCAGC   1219

BSNT_01291___   1202 CGTTCTATACGAAGTTCATTACCCTGTCCAACCACTTCCCATTCGGAATG   1251
                     ||||.|||.||||.||||||||..|.||.|||||.||||||||.||||||
BPUM_0724___y   1220 CGTTTTATTCGAAATTCATTACGTTATCGAACCATTTCCCATTTGGAATG   1269

BSNT_01291___   1252 GATGAGGGAGATACAGACTTCCCGGCTGGAGACTTTGGTGACTCTGTCGT   1301
                     |||||.||.|||||.||.|||....||||.|||||.||.||.||||||||
BPUM_0724___y   1270 GATGAAGGGGATACCGATTTCGAACCTGGTGACTTCGGAGATTCTGTCGT   1319

BSNT_01291___   1302 CGATAACTACTTCCAGTCAGCCCATTACCTTGATCAGTCCATTGAACAAT   1351
                     |.|||||||.|||||.||.||.|||||..|.|||.|..||||||||||.|
BPUM_0724___y   1320 CAATAACTATTTCCAATCCGCTCATTATTTAGATGAAGCCATTGAACAGT   1369

BSNT_01291___   1352 TCTTCAATGACCTGAAAAAAGACGGGT-TATATGATA----AATCGATTA   1396
                     |||||||.|||||| ||||||.|.||| |.|||||.|    |.||| |.|
BPUM_0724___y   1370 TCTTCAACGACCTG-AAAAAGTCTGGTCTCTATGACAATACAGTCG-TCA   1417

BSNT_01291___   1397 TTGTGATGTACGGAGACCACTACGGCATCTCTGAAAACCACAATAAAGCG   1446
                     ||   ||||||||.|||||.||||||||.|||||||||||||||.|||||
BPUM_0724___y   1418 TT---ATGTACGGTGACCATTACGGCATTTCTGAAAACCACAATGAAGCG   1464

BSNT_01291___   1447 ATGGCGAAAGTGCTTGGCA-AGGATGAAATCACT----GATTACGACAAT   1491
                     ||||..||||||      | ||||..|||  |.|    |||||.||.|||
BPUM_0724___y   1465 ATGGAAAAAGTG------ACAGGACAAAA--AATTGGAGATTATGAAAAT   1506

BSNT_01291___   1492 GCCCAGCTTCAACGGGTGCCGCTCTTTATCCACGCTGCC-GGCGTGAAGG   1540
                     ||.||||||...||.||.||||||||||||||.| |.|| |||||.||.|
BPUM_0724___y   1507 GCGCAGCTTATGCGTGTACCGCTCTTTATCCATG-TACCAGGCGTAAAAG   1555

BSNT_01291___   1541 GCGAGAAAG-TTCATAAATATGCCGGAGACGTTGATGTGGCTCCTACCAT   1589
                     ||| ||.|| ||||||||||..|.||.||.||.|||||.||.||.|||.|
BPUM_0724___y   1556 GCG-GACAGATTCATAAATACTCTGGTGAAGTCGATGTCGCACCAACCCT   1604

BSNT_01291___   1590 TCTGCATCTGCTCGGAGTGGATACGAAGGACTATCTGATGTCCGGTTCTG   1639
                     |||.||.|||||.||.|..|||||||||.|||||.|.|||||.|||||||
BPUM_0724___y   1605 TCTACACCTGCTTGGCGATGATACGAAGAACTATTTAATGTCTGGTTCTG   1654

BSNT_01291___   1640 ATATTTTATCG---------AAAGAACACCGTGAAGTGATTCCGTTCCGC   1680
                     ||||.||||||         |||||.|      .||||   ||.||..|.
BPUM_0724___y   1655 ATATCTTATCGAATAATTTCAAAGAGC------TAGTG---CCATTTAGA   1695

BSNT_01291___   1681 AACGGAGACTTTATTTCACCGAAGTACACGAAAATATCCGGTAAGTATTA   1730
                     ||.||.|||||..|.||...|.|.|||||.|||.||..|..|||.|||||
BPUM_0724___y   1696 AATGGTGACTTCGTCTCTAAGGATTACACAAAAGTAGGCAATAACTATTA   1745

BSNT_01291___   1731 CGACACGAAAACCG----GAAAAGAACTCGATGAATCCGAAGTCGAC---   1773
                     |..||..|||||.|    |||||    |||          ||.||||   
BPUM_0724___y   1746 CAGCAACAAAACAGGTGAGAAAA----TCG----------AGCCGACTGA   1781

BSNT_01291___   1774 -AAGTC------AGAA---GACTCGCTCGTCAAGAAGGAACTTGAAATGT   1813
                      |||.|      ||||   ||..||   ||.||.|||...|||||.|..|
BPUM_0724___y   1782 TAAGGCATCACAAGAAAATGAAACG---GTGAAAAAGATGCTTGAGACAT   1828

BSNT_01291___   1814 CCGATAAAATCATAAACGGAGACCTGCTGCGGTTCTACGAGCCGAAAGGT   1863
                     |.|||||.||..|.|.||.||||.|.||.||.||||||.||||.|||||.
BPUM_0724___y   1829 CTGATAAGATTGTCACCGAAGACTTACTCCGTTTCTACAAGCCTAAAGGC   1878

BSNT_01291___   1864 TTTA-AGAAGGTG-----AATCCTTCTGATTATGATTACACAAA------   1901
                     |||| |..|..||     ||||      |.|||||.||.|||||      
BPUM_0724___y   1879 TTTACACCAATTGACCGCAATC------AATATGACTATACAAAGAAAGT   1922

BSNT_01291___   1902 AC---ATGACGAAGAT---TCTTCCGAAACGTCAAAGGAT-AACGAAGAT   1944
                     ||   ||||.||||||   |||||||      |.||.||| ||..|||.|
BPUM_0724___y   1923 ACAGGATGAAGAAGATTCCTCTTCCG------CCAAAGATGAATCAAGCT   1966

BSNT_01291___   1945 --------AAATAA   1950
                             ||||||
BPUM_0724___y   1967 CTTCATCAAAATAA   1980


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