Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01291 and BPUM_0724
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:52
# Commandline: needle
# -asequence dna-align/BSNT_01291___yflE.1.24716.seq
# -bsequence dna-align/BPUM_0724___yflE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01291___yflE-BPUM_0724___yflE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01291___yflE-BPUM_0724___yflE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01291___yflE
# 2: BPUM_0724___yflE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2064
# Identity: 1433/2064 (69.4%)
# Similarity: 1433/2064 (69.4%)
# Gaps: 198/2064 ( 9.6%)
# Score: 4773.5
#
#
#=======================================
BSNT_01291___ 1 ATGAAAACATTTATAAAAGAAAGAGGACTGGCCTTCTTCTTAATCGCGGT 50
||||||||||||||..||.||.||||.||.|.||||||..|.||.||.|.
BPUM_0724___y 1 ATGAAAACATTTATTCAAAAACGAGGCCTCGGCTTCTTTGTTATTGCAGC 50
BSNT_01291___ 51 CGTCCTGTTATGGATCAAAACGTATGTCAG------TTATGTCCTGAACT 94
|.||.|..|.|||.||||||||||| ||.| |.|| ||||.|
BPUM_0724___y 51 CATCTTACTTTGGCTCAAAACGTAT-TCGGCGTATTTAAT----TGAATT 95
BSNT_01291___ 95 TCAACTTAGGAATAGACAACACGATACAAAAAATATTGCTTTTTGTGAAT 144
|.||||| ||.|||...||...|.|.||..|.||.||||||||.||||||
BPUM_0724___y 96 TAAACTT-GGTATATCAAATGTGCTTCAGCATATTTTGCTTTTCGTGAAT 144
BSNT_01291___ 145 CCTCTTAGCTCAAGCTTGTTCTTTCTTGGCTTTGGACTCTTGTTCAAGAA 194
|||.|||||||.||||||||||||||||||||||...|.|||||||||||
BPUM_0724___y 145 CCTATTAGCTCCAGCTTGTTCTTTCTTGGCTTTGCTTTATTGTTCAAGAA 194
BSNT_01291___ 195 AAAATTACAGCAGACAGCCATTATAGTGATTCATTTTTTAATGTCTTTTT 244
|||||..||||...|.||.||.||.||||||||||||||.||||||||||
BPUM_0724___y 195 AAAATGGCAGCCTGCCGCTATCATTGTGATTCATTTTTTCATGTCTTTTT 244
BSNT_01291___ 245 TACTGTACGCCAACATTGTGTACTACAGATTTTTCAATGATTTTATTACA 294
||||.|||||.|||||.||||||||..||||.||||||||.|||||.||.
BPUM_0724___y 245 TACTATACGCAAACATCGTGTACTATCGATTCTTCAATGACTTTATCACG 294
BSNT_01291___ 295 ATTCCGGTCATTATGCAGGCTAAAACAAACGGCGGCCAACTCGGTGACAG 344
.|.||...|.|.||||||||...|||.||.|||||.|||.|.|||||.||
BPUM_0724___y 295 CTGCCTACCGTGATGCAGGCAGGAACGAATGGCGGACAATTAGGTGATAG 344
BSNT_01291___ 345 CGCATTTTCGCTGATGAGACCGACTGACGCCTTTTACTTTATCGATACGA 394
.||||||||.||.|||.|...||||||....|||||||||||.|||||.|
BPUM_0724___y 345 TGCATTTTCACTCATGCGTTGGACTGATATGTTTTACTTTATGGATACCA 394
BSNT_01291___ 395 TCATCCTGATCAT-CTTG------GCGATCAA-----AGTAAACAAG--- 429
||||..|||||.| ||.| || ||.|| ||.|||||||
BPUM_0724___y 395 TCATTTTGATCGTACTCGCAGTCCGC-ATGAAAAAGCAGCAAACAAGTAC 443
BSNT_01291___ 430 ----------CCTGCCGAAACGTCAAGCAAAAAATCGTTCCGAATTATTT 469
||||...|||.||| |||||||||..||.|..|..
BPUM_0724___y 444 AGCTACTGTACCTGTTCAAAAGTC------AAAATCGTTTAGACTCGTCC 487
BSNT_01291___ 470 TTGCGTCTTCAATTCTTGTGTTCT---TGATCAACCTGGCAGTTGCGGA- 515
|||.|||||| |.||||..||| ||||.||..|.|..|.|||.||
BPUM_0724___y 488 TTGTGTCTTC---TGTTGTCATCTTTGTGATGAATTTAGTCGCTGCAGAG 534
BSNT_01291___ 516 ATCAGACCGTCCTGAATTGCTGACAAGATCATTCGACCGGAACTATCTTG 565
|| .||.|||||.||..|..|..|||||||.||.|||||.||.|||.|.|
BPUM_0724___y 535 AT-TGATCGTCCAGAGCTTTTATCAAGATCGTTTGACCGCAATTATTTAG 583
BSNT_01291___ 566 TGAAATACTTGGGAACATACAATTTCACGATTTATGACGCTGTACAGAAT 615
|||||||.||.||..|.||.||.||.||..|.|.|||.||..|.||.|||
BPUM_0724___y 584 TGAAATATTTAGGTGCTTATAACTTTACAGTGTTTGATGCCATTCAAAAT 633
BSNT_01291___ 616 ATCAAGTCCAACAGCCAGCGCGCGCTTGCCGATTCCAGCGACGTGACGGA 665
.|.||.||.|||||||||||.||.||.||..||||.|..||||||||.||
BPUM_0724___y 634 GTGAAATCAAACAGCCAGCGTGCTCTGGCAAATTCAAATGACGTGACAGA 683
BSNT_01291___ 666 AGTAGAAAACTACATGAAAGCCAATTACGATGTGCCGA--ATAAC---GT 710
.|||||.|||||..|.|||||.|| ..||||.|| .|||| |.
BPUM_0724___y 684 TGTAGAGAACTATTTAAAAGCGAA-----CAGTGCTGATCCTAACCCTGC 728
BSNT_01291___ 711 GTATTTCGGCAAAGCGGAAGGAAAAAACGTCATTTACG-TTTCACTTGAA 759
.||||.|||.||||||.||||.|..|||||.| ||||| ||||.||||||
BPUM_0724___y 729 TTATTACGGGAAAGCGAAAGGCATGAACGTGA-TTACGATTTCTCTTGAA 777
BSNT_01291___ 760 TCTTTGCAGTCATTTATCATCGACTATAAAATTGACGGCAAAGAAGTGAC 809
|||.||||....|||.||||.||.||.|||.|..||||.|||||||||||
BPUM_0724___y 778 TCTCTGCAAAACTTTGTCATTGATTACAAAGTAAACGGAAAAGAAGTGAC 827
BSNT_01291___ 810 ACCGTTCTTAAATAAACTGGCACATGATAACGAAACGTTCTACTTTGATA 859
.||.|||.|.|||..|.|||||||.||.|||.|||||||.||||||||||
BPUM_0724___y 828 GCCTTTCCTTAATTCATTGGCACACGACAACAAAACGTTTTACTTTGATA 877
BSNT_01291___ 860 ACTTTTTCCACCAAACGGGACAAGGCAAAACATCTGATGCTGAATTTATG 909
||||.|||||.|||||.||.|||||.|||||.||||||||||||||||||
BPUM_0724___y 878 ACTTCTTCCATCAAACAGGTCAAGGAAAAACGTCTGATGCTGAATTTATG 927
BSNT_01291___ 910 ATGGAAAACTCT---CTGTACCCGCTGGCTCAAGGTTCAGTTTTCGTAAA 956
|||||.| || ||.|.|||..|..|.|||||.||.|||||..|.||
BPUM_0724___y 928 ATGGATA---CTGGGCTATTCCCATTATCACAAGGCTCTGTTTTTATTAA 974
BSNT_01291___ 957 CAAAGCGCAAAACACGCTGCAATCCGTTCC-GGCGATTCTGAAGTCTAAG 1005
||||||||||||||||...|||.||.|||| ||| ||.|||||| |||
BPUM_0724___y 975 CAAAGCGCAAAACACGTATCAAGCCATTCCTGGC-ATCCTGAAG---AAG 1020
BSNT_01291___ 1006 AAT---TACACATCTGCTACTTTCCACGGGAACACGCAGACGTTCTGGAA 1052
.|| |||||.||.||....||||||||.||.||..|.||.||||||||
BPUM_0724___y 1021 GATCAGTACACGTCAGCAGAATTCCACGGCAATACAAAAACCTTCTGGAA 1070
BSNT_01291___ 1053 CCGTAACGAAATGTACAAAGCGGAAGGCAT-TGATAAATTCTTTGATTCT 1101
||||||.|||||||..||..||...|| || |||.|.|||.|..||||||
BPUM_0724___y 1071 CCGTAATGAAATGTTTAAGTCGTTTGG-ATATGACAGATTTTACGATTCT 1119
BSNT_01291___ 1102 GCCTACTATGACATGAACGAAGAAAACACGAAAAACTACGGCATGAAAGA 1151
|..|||||.||.|||||.||..||.|.|||||.|||||.||..|||||||
BPUM_0724___y 1120 GAGTACTACGATATGAATGAGCAAGATACGAAGAACTATGGGTTGAAAGA 1169
BSNT_01291___ 1152 CAAACCGTTCTTCAAAGAATCAATGCCGCTGCTGGAAAGCCTGCCGCAGC 1201
||||||.||||||||||||||.|||||..||||.||||.|.|...|||||
BPUM_0724___y 1170 CAAACCATTCTTCAAAGAATCTATGCCAATGCTTGAAAACTTAAAGCAGC 1219
BSNT_01291___ 1202 CGTTCTATACGAAGTTCATTACCCTGTCCAACCACTTCCCATTCGGAATG 1251
||||.|||.||||.||||||||..|.||.|||||.||||||||.||||||
BPUM_0724___y 1220 CGTTTTATTCGAAATTCATTACGTTATCGAACCATTTCCCATTTGGAATG 1269
BSNT_01291___ 1252 GATGAGGGAGATACAGACTTCCCGGCTGGAGACTTTGGTGACTCTGTCGT 1301
|||||.||.|||||.||.|||....||||.|||||.||.||.||||||||
BPUM_0724___y 1270 GATGAAGGGGATACCGATTTCGAACCTGGTGACTTCGGAGATTCTGTCGT 1319
BSNT_01291___ 1302 CGATAACTACTTCCAGTCAGCCCATTACCTTGATCAGTCCATTGAACAAT 1351
|.|||||||.|||||.||.||.|||||..|.|||.|..||||||||||.|
BPUM_0724___y 1320 CAATAACTATTTCCAATCCGCTCATTATTTAGATGAAGCCATTGAACAGT 1369
BSNT_01291___ 1352 TCTTCAATGACCTGAAAAAAGACGGGT-TATATGATA----AATCGATTA 1396
|||||||.|||||| ||||||.|.||| |.|||||.| |.||| |.|
BPUM_0724___y 1370 TCTTCAACGACCTG-AAAAAGTCTGGTCTCTATGACAATACAGTCG-TCA 1417
BSNT_01291___ 1397 TTGTGATGTACGGAGACCACTACGGCATCTCTGAAAACCACAATAAAGCG 1446
|| ||||||||.|||||.||||||||.|||||||||||||||.|||||
BPUM_0724___y 1418 TT---ATGTACGGTGACCATTACGGCATTTCTGAAAACCACAATGAAGCG 1464
BSNT_01291___ 1447 ATGGCGAAAGTGCTTGGCA-AGGATGAAATCACT----GATTACGACAAT 1491
||||..|||||| | ||||..||| |.| |||||.||.|||
BPUM_0724___y 1465 ATGGAAAAAGTG------ACAGGACAAAA--AATTGGAGATTATGAAAAT 1506
BSNT_01291___ 1492 GCCCAGCTTCAACGGGTGCCGCTCTTTATCCACGCTGCC-GGCGTGAAGG 1540
||.||||||...||.||.||||||||||||||.| |.|| |||||.||.|
BPUM_0724___y 1507 GCGCAGCTTATGCGTGTACCGCTCTTTATCCATG-TACCAGGCGTAAAAG 1555
BSNT_01291___ 1541 GCGAGAAAG-TTCATAAATATGCCGGAGACGTTGATGTGGCTCCTACCAT 1589
||| ||.|| ||||||||||..|.||.||.||.|||||.||.||.|||.|
BPUM_0724___y 1556 GCG-GACAGATTCATAAATACTCTGGTGAAGTCGATGTCGCACCAACCCT 1604
BSNT_01291___ 1590 TCTGCATCTGCTCGGAGTGGATACGAAGGACTATCTGATGTCCGGTTCTG 1639
|||.||.|||||.||.|..|||||||||.|||||.|.|||||.|||||||
BPUM_0724___y 1605 TCTACACCTGCTTGGCGATGATACGAAGAACTATTTAATGTCTGGTTCTG 1654
BSNT_01291___ 1640 ATATTTTATCG---------AAAGAACACCGTGAAGTGATTCCGTTCCGC 1680
||||.|||||| |||||.| .|||| ||.||..|.
BPUM_0724___y 1655 ATATCTTATCGAATAATTTCAAAGAGC------TAGTG---CCATTTAGA 1695
BSNT_01291___ 1681 AACGGAGACTTTATTTCACCGAAGTACACGAAAATATCCGGTAAGTATTA 1730
||.||.|||||..|.||...|.|.|||||.|||.||..|..|||.|||||
BPUM_0724___y 1696 AATGGTGACTTCGTCTCTAAGGATTACACAAAAGTAGGCAATAACTATTA 1745
BSNT_01291___ 1731 CGACACGAAAACCG----GAAAAGAACTCGATGAATCCGAAGTCGAC--- 1773
|..||..|||||.| ||||| ||| ||.||||
BPUM_0724___y 1746 CAGCAACAAAACAGGTGAGAAAA----TCG----------AGCCGACTGA 1781
BSNT_01291___ 1774 -AAGTC------AGAA---GACTCGCTCGTCAAGAAGGAACTTGAAATGT 1813
|||.| |||| ||..|| ||.||.|||...|||||.|..|
BPUM_0724___y 1782 TAAGGCATCACAAGAAAATGAAACG---GTGAAAAAGATGCTTGAGACAT 1828
BSNT_01291___ 1814 CCGATAAAATCATAAACGGAGACCTGCTGCGGTTCTACGAGCCGAAAGGT 1863
|.|||||.||..|.|.||.||||.|.||.||.||||||.||||.|||||.
BPUM_0724___y 1829 CTGATAAGATTGTCACCGAAGACTTACTCCGTTTCTACAAGCCTAAAGGC 1878
BSNT_01291___ 1864 TTTA-AGAAGGTG-----AATCCTTCTGATTATGATTACACAAA------ 1901
|||| |..|..|| |||| |.|||||.||.|||||
BPUM_0724___y 1879 TTTACACCAATTGACCGCAATC------AATATGACTATACAAAGAAAGT 1922
BSNT_01291___ 1902 AC---ATGACGAAGAT---TCTTCCGAAACGTCAAAGGAT-AACGAAGAT 1944
|| ||||.|||||| ||||||| |.||.||| ||..|||.|
BPUM_0724___y 1923 ACAGGATGAAGAAGATTCCTCTTCCG------CCAAAGATGAATCAAGCT 1966
BSNT_01291___ 1945 --------AAATAA 1950
||||||
BPUM_0724___y 1967 CTTCATCAAAATAA 1980
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