Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02061 and BPUM_0723
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_02061___yjgB.1.24716.seq
# -bsequence dna-align/BPUM_0723___yjgB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02061___yjgB-BPUM_0723___yjgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02061___yjgB-BPUM_0723___yjgB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02061___yjgB
# 2: BPUM_0723___yjgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 684
# Identity: 355/684 (51.9%)
# Similarity: 355/684 (51.9%)
# Gaps: 204/684 (29.8%)
# Score: 774.0
#
#
#=======================================
BSNT_02061___ 1 ATGAAAAAGACAATGTCTGCTATTACCGCGGCGGCAGCAGTAACAAG-CT 49
|||||.||.|||| |.|||.|| || ||.| ||
BPUM_0723___y 1 ATGAAGAAAACAA---CCGCTTTT---------------GT--CATGACT 30
BSNT_02061___ 50 GTTTTAC-CGGCTTTGGGGCTGCGTCC-------TT---TTCAGCACCGG 88
|.||.|| | |||.||||| || |||||| ||.|
BPUM_0723___y 31 GCTTCACTC---------GCTACGTCCGCCTTCATTGGATTCAGC-CCTG 70
BSNT_02061___ 89 CAAAGGCCGCAGCTCAAACAAACACGCTCTCAGAAAACACGAATCAATCA 138
.| |||.|||| |||.|| ||.||...|||||
BPUM_0723___y 71 TA---GCCCCAGC--------ACATGC----------CATGAGCAAATCA 99
BSNT_02061___ 139 GCCGCCGAGC-------TTGTCA-------AAAACCTCTAT-AACACC-- 171
||.|.||||| |..||| |.||||.||.| ||||||
BPUM_0723___y 100 GCAGTCGAGCAATCCGTTCCTCAAGGTCCGACAACCGCTTTAAACACCAT 149
BSNT_02061___ 172 ----------GCCTATAAAGGGGAAATGCCTCAGCAGGCGCAAGGCCTTA 211
||..|||||||..|||||||..|..|.||..|||||.|||
BPUM_0723___y 150 TTATGAGCTGGCACATAAAGGACAAATGCCGTATTATGCAAAAGGCTTTA 199
BSNT_02061___ 212 CCATT--------AACAAAAGCACAAAAGGGGATGTCCACGCTGCGTT-- 251
..||| ||||| |.|| ||||||||| |
BPUM_0723___y 200 AAATTGGTGTTCAAACAA------AGAA--GGATGTCCA--------TCA 233
BSNT_02061___ 252 -----TGGGGAA-------CCGGAAAGACCAGTCGGGGGAGACAA--TCG 287
|.||.|| ||.|||| ||| |.||| |.|
BPUM_0723___y 234 TAAACTAGGAAATCCATATCCAGAAA---CAG--------GCCAAAGTAG 272
BSNT_02061___ 288 CTTTGATTTATATCA--CTGGAATATGGGACAGCCGGGCTACGGATTTTC 335
|||||||||.||||| ||| |.|||||..|.||| ||||||.|
BPUM_0723___y 273 CTTTGATTTGTATCATGCTG--AAATGGGGAATCCG------GGATTTGC 314
BSNT_02061___ 336 CTATCATAAAGACATG--------ACAATTTCAGAAATCCGCTACTTTGG 377
.|.||||.|.| ||| |.||||...|||||.||.||.||.||
BPUM_0723___y 315 TTTTCATTATG--ATGCAAAAGGTAAAATTGATGAAATTCGTTATTTCGG 362
BSNT_02061___ 378 AACCGGTGT-GGAACGGCAGCTGAATTTAGGCGGAGTTACGCCGGAAGTA 426
.||...||| |.||..|.|.| ||||.|.||||||.|.||.||.....||
BPUM_0723___y 363 CACAAATGTAGAAAAAGAAAC-GAATATCGGCGGAATGACCCCTTCCCTA 411
BSNT_02061___ 427 CTGCAGAAGCAATTAGGACCAGCAAATCGGGT--GTTAACCGTCCCGTTT 474
||..||||.|||.|.||||.|||..||...|| || |||.||||
BPUM_0723___y 412 CTAAAGAAACAACTTGGACAAGCGGATTCAGTCAGT--ACCATCCC---- 455
BSNT_02061___ 475 ACCG----ATGAAATCGATTATGTATAT-GATACAGGCCACTATGAACTC 519
||.| |.||||...|.||.||.||| || ||.||..|.|||||.||.
BPUM_0723___y 456 ACAGACAAAAGAAAAAAAATACGTGTATCGA-ACTGGAGATTATGAGCTG 504
BSNT_02061___ 520 CATTTTGTAATAGG--------CACGGATCAGACAGCCGA---------- 551
.|.|||.|..|.|| ||...|||||.||||.||
BPUM_0723___y 505 GAATTTATCGTCGGTCATGATCCAGATATCAGTCAGCAGAAGCTCACCGT 554
BSNT_02061___ 552 ---CCATGTAAAC---CTAAAAGCAAA---ATAA 576
.|||.|.||| .|.|||||..| .|||
BPUM_0723___y 555 CTTGCATATTAACTTGGTGAAAGCTGATTCCTAA 588
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