Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01290 and BPUM_0720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:52
# Commandline: needle
# -asequence dna-align/BSNT_01290___nagP.1.24716.seq
# -bsequence dna-align/BPUM_0720___nagP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01290___nagP-BPUM_0720___nagP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01290___nagP-BPUM_0720___nagP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01290___nagP
# 2: BPUM_0720___nagP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 964/1443 (66.8%)
# Similarity: 964/1443 (66.8%)
# Gaps: 156/1443 (10.8%)
# Score: 2918.0
#
#
#=======================================
BSNT_01290___ 1 ATGC--------TTTCA-TTTTTACAAAAACTCGGGAAGTCATTTATGCT 41
|||| ||||| |||.|.|||||.|||||.||.|||||||||||
BPUM_0720___n 1 ATGCAAATGGTGTTTCAGTTTCTTCAAAAGCTCGGCAAATCATTTATGCT 50
BSNT_01290___ 42 CCCGATTGCGGTTCTGCCTGCGGTTGGAATTATCCTTGCGCTTGG-CAGA 90
.||.||.||.||.||.||.||.|..||||||||..|.||..|||| |.||
BPUM_0720___n 51 TCCAATCGCTGTGCTTCCAGCAGCAGGAATTATTTTGGCTATTGGACGGA 100
BSNT_01290___ 91 GAGGATGTATTTAATATCCCGTTTGTCTAT-CAGGCGGGGACGGCGGTTT 139
|||||||||||.|||||||||||.|..|| || |||||.|...|..|||
BPUM_0720___n 101 -AGGATGTATTTGATATCCCGTTTATTCATGCA-GCGGGAAATTCCATTT 148
BSNT_01290___ 140 TTGATCATCTGCCGCTT--ATTTTTGCGATCGGAATTGCCATCGGCATTT 187
||||..|..|| |||| ||||||||.||.||.||.||.|||||.|||.
BPUM_0720___n 149 TTGAAAACTTG--GCTTTGATTTTTGCAATGGGTATAGCGATCGGTATTG 196
BSNT_01290___ 188 CAAAAGACAGCAATGGGGCCGCGGGTTTATCAGGGGCGATATCGTATCTG 237
||||.||..||||.|||||.||||..||||||||.|||||..|.|||.|.
BPUM_0720___n 197 CAAAGGATGGCAACGGGGCAGCGGCATTATCAGGAGCGATTGCTTATTTT 246
BSNT_01290___ 238 ATGCTTGA--CGCGGCTACAAAGACAATTGATAAAACAAATAACATGGCG 285
|| ||.| .||.|.|||||...|||||.||..|||.||.||.||||.|
BPUM_0720___n 247 AT--TTTATCAGCTGGTACAACATCAATTAATTCAACGAACAATATGGGG 294
BSNT_01290___ 286 GTGTTTGGGGGAATTAT-TGCCGGTTTAATTGCCGGTTACACCTATAACC 334
.|.|||||.||.|||.| || |||..||.|.||.|||||....||.||.|
BPUM_0720___n 295 ATATTTGGCGGTATTTTATG-CGGCCTACTGGCAGGTTATGTGTACAATC 343
BSNT_01290___ 335 GCTTCAAGGATACCAAGCTGCCTGAATATCTCGGATTTTTCAGTGGCAGA 384
|.||||||||||..||.||.||.|||||..|.||.||.||.||.||.|||
BPUM_0720___n 344 GATTCAAGGATAAAAAACTACCCGAATACTTAGGGTTCTTTAGCGGAAGA 393
BSNT_01290___ 385 CGGCTTGTGCCGATTATAACAGCCATTATTACGATCATTTTAGCGGGCAT 434
||||||||.||.|||||.||.||..||.|.||.||..|.|||||.|..||
BPUM_0720___n 394 CGGCTTGTTCCTATTATGACTGCACTTTTCACCATTTTATTAGCCGCTAT 443
BSNT_01290___ 435 ATTCGGAGTCGTCTGGCCGCCGATTCAATCTTGTATCAACTCG-TTTGGA 483
.||||||.|.||.||||||||.||||||....|.||||| |.| ||.||.
BPUM_0720___n 444 TTTCGGATTTGTATGGCCGCCAATTCAAAGCGGGATCAA-TGGATTAGGG 492
BSNT_01290___ 484 GAGTGGATGCTCGGGCTCGGCGGCATCGGG-GCAGGCATATTCGGCCTTT 532
||.|||||..|..|.||.|| .|||.|||| |||||..||||.||..|.|
BPUM_0720___n 493 GAATGGATTTTAAGTCTTGG-TGCAACGGGTGCAGGGCTATTTGGTTTCT 541
BSNT_01290___ 533 TCAACAGGCTGTTAATTCCGCTTGGCCTTCACCATGTACTGAACAA--TA 580
|.|||.|..||.|.|||||..|.||.|||||.|||||||||||||| ||
BPUM_0720___n 542 TTAACCGCTTGCTCATTCCATTAGGACTTCATCATGTACTGAACAACTTA 591
BSNT_01290___ 581 TTTTCTGGTTCCAATTTGGAGAATATAACGGAGTGACAGGGGATCTGGCG 630
||| |||||.|||||.||.||||..|.|||||..|||||||||.|.||.
BPUM_0720___n 592 TTT--TGGTTTCAATTCGGGGAATTCAGCGGAGCAACAGGGGATTTAGCA 639
BSNT_01290___ 631 CGCTT-TTTCGCGAA---AGATCCGACAGCGGGCACATATATGACGGGAT 676
||.|| ||| || ||||||.|..||.||....|.||||||.||.|
BPUM_0720___n 640 CGATTCTTT----AAAGGAGATCCTAGTGCAGGTGTCTTTATGACTGGGT 685
BSNT_01290___ 677 TCTTCCCAATCATGATGTTCGGTCTTCCGGCGGCGTGTCTGGCTATGGTT 726
|.||||||.|.||||||||||||||.||.|||||.|||||.||.||||||
BPUM_0720___n 686 TTTTCCCAGTGATGATGTTCGGTCTGCCAGCGGCATGTCTAGCCATGGTT 735
BSNT_01290___ 727 GTGACTGCGAAGCCGTCTAAA-CGGAAAGCGACGGCTGGGATGATGATTG 775
|||||.||.||.|| |..||| ||.|||||.||.|||||..|||||||||
BPUM_0720___n 736 GTGACAGCAAAACC-TGAAAAGCGAAAAGCAACCGCTGGTTTGATGATTG 784
BSNT_01290___ 776 GGTTTGCTTTAACGGCGTTTATCACAGGGATTACGGAGCCGATTGAGTTT 825
||.|.||..|.|||.|.|||||.|||||.||.||.||.||.|||||.||.
BPUM_0720___n 785 GGATGGCGCTGACGTCATTTATTACAGGAATCACTGAACCTATTGAATTC 834
BSNT_01290___ 826 GCATTTATGTTTTTATCTCCGCTTTTATACGCTGTTCACGCGGTCTTAAC 875
.|.|||||||||||||||||.||.|||||.|.|||.||.||.||..|.||
BPUM_0720___n 835 TCCTTTATGTTTTTATCTCCACTCTTATATGGTGTCCATGCTGTGCTGAC 884
BSNT_01290___ 876 CGGGTTATCTTTATTTATCGTCAACTGGC-TCGGCATCCGCTCA----GG 920
.||..||||..|.|||||.|| ||.|..| |.||.|| ||| ||
BPUM_0720___n 885 AGGTCTATCGCTCTTTATTGT-AAATATCATTGGGAT----TCATAGCGG 929
BSNT_01290___ 921 CTTCTCTTTTTCAGCCGGAGCTATCGATTATGTGCTCAGCTATGGAATCG 970
||||.|.||||||||.|||||.||.|||||..|..|.||.|.|||.||||
BPUM_0720___n 930 CTTCACCTTTTCAGCAGGAGCGATTGATTACATTTTAAGTTTTGGTATCG 979
BSNT_01290___ 971 CGGAAAAACCGCTGCTTCTGCTT----TTG--GTAGGTATATGCTATGCA 1014
|..|||||||.||..|.||.||| ||| || |.|.||||..||.|
BPUM_0720___n 980 CCCAAAAACCACTTATGCTACTTGGAGTTGGCGT-GCTTTATGGCATTC- 1027
BSNT_01290___ 1015 GCGGTATACTTTATCGTGTTTTATGTACTGATTAAGGCT-TTGAATTTAA 1063
|.||||||.|.||.||.|||.|.||.||||| .|| |||||..|.|
BPUM_0720___n 1028 ----TGTACTTTGTTGTTTTCTATTTCCTCATTAA-ACTGTTGAAGCTCA 1072
BSNT_01290___ 1064 AAACGCCTGGACGGGAAGACGATGATGTGGATGAAGTGCTGGATGAAAAT 1113
||||.||.|||.|.|||||.|||||..| ||||.||
BPUM_0720___n 1073 AAACACCAGGAAGAGAAGATGATGAAAT---------------TGAAGAT 1107
BSNT_01290___ 1114 ACTGTTCAG--GATGTAAATGAAAACA-----------TCATGCT--GAA 1148
|.|| ||| |||| |.|.|||.||| | ||||| .|.
BPUM_0720___n 1108 ATTG--CAGCCGATG-ATACGAAGACAGAAGGTGCAAGT-ATGCTTCTAG 1153
BSNT_01290___ 1149 AGGG-CTCGGCGGAAAAGAAAACCT-TCA-AACCATTGATCATTGCGCCA 1195
|||| ||.||.||.|||||||| | ||| .||.|||||||||||.||||
BPUM_0720___n 1154 AGGGACTTGGTGGCAAAGAAAA--TATCACGACGATTGATCATTGTGCCA 1201
BSNT_01290___ 1196 CAAGGCTGCGACTGACTGT-GAAGGATACCGCTTTGGTGGATG-AAGCGC 1243
|..|.||.||..|.||.|| ||| |||||....||..|..||| |||..|
BPUM_0720___n 1202 CTCGTCTACGTTTAACAGTAGAA-GATACACAATTATTAAATGAAAGTAC 1250
BSNT_01290___ 1244 TGCTAAAGAAAGCAGGCGCAAAAGGGGT--TG---TCAAATCGGGCGGGC 1288
| .|.||.||||||||.||.|||||||| || ||| ||.
BPUM_0720___n 1251 T-TTGAAAAAAGCAGGTGCCAAAGGGGTACTGACTTCA---------GGA 1290
BSNT_01290___ 1289 AA----TCGGTTCAAGTCATTATTGGCCCGAATGTGGAATTT---GCAGC 1331
|| ||.||.|||.||||.|||||..|||||||.|||||| ||||.
BPUM_0720___n 1291 AAAAACTCTGTACAAATCATCATTGGAACGAATGTAGAATTTGTCGCAGA 1340
BSNT_01290___ 1332 TG---------AGGAATTGAGGGCTGCTGTCAAA------TAA 1359
|| ||||| |||.|| |||
BPUM_0720___n 1341 TGATCTTCGCAAGGAA------------GTCGAACGAGATTAA 1371
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