Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01283 and BPUM_0716
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:52
# Commandline: needle
# -asequence dna-align/BSNT_01283___yflK.1.24716.seq
# -bsequence dna-align/BPUM_0716___yflK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01283___yflK-BPUM_0716___yflK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01283___yflK-BPUM_0716___yflK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01283___yflK
# 2: BPUM_0716___yflK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 791
# Identity: 399/791 (50.4%)
# Similarity: 399/791 (50.4%)
# Gaps: 256/791 (32.4%)
# Score: 909.5
#
#
#=======================================
BSNT_01283___ 1 -------------------------ATGAAACCAGAG-CGCTATTC-AGT 23
|||| ||.|| .|..|||| ||
BPUM_0716___y 1 ATGGTCATCGTGGGACATAAGAAATATGA---CATAGTAGGAATTCAAG- 46
BSNT_01283___ 24 TCTTTCTCTTAATCTGGGAAAACCGCA----GACGCTTGAATATG---AC 66
|.|||.|||| || ||| .|||| ||
BPUM_0716___y 47 --------------TAGGACAACC-CATCACGAC------CTATGCAAAC 75
BSNT_01283___ 67 GGAAAGAAAATCGAAACCGGCATCATGAAGCGGCCGGCTGA----ATCAG 112
|||||..|||||.||||.|.|||||..||...|| || ||.||
BPUM_0716___y 76 GGAAAAGAAATCAAAACAGCCATCAACAAAAAGC-----GAATACATGAG 120
BSNT_01283___ 113 CC-GTC-ATGCTGTATCGGGAGAATTTTGAAGGAGACGGACAGGCGGACC 160
|| ||| || .||..|..||..||||||||.|||||.||.||.|..||..
BPUM_0716___y 121 CCTGTCTAT-TTGAGTAAGGTCAATTTTGAGGGAGATGGTCAAGGTGATT 169
BSNT_01283___ 161 TCGTCAACCACGGCGGACCTGATAAGGCTGTCTGTGTCTACCCGGCGGAG 210
|.||..|.||.||.|||..||||||.||.|||||.||||..||....||.
BPUM_0716___y 170 TGGTTCATCATGGAGGATATGATAAAGCCGTCTGCGTCTTTCCATACGAT 219
BSNT_01283___ 211 CATTAT------------CCGTTTT--GGGAAGAGTTCC-TCTCAAGACC 245
||.||| |.||||| ||| ||||| |..||.|
BPUM_0716___y 220 CACTATACTTATTTCGAGCAGTTTTTAGGG----GTTCCGTTACAGG--- 262
BSNT_01283___ 246 GCTGTCAAATGCCGCATTTGGAGAAAATCTGACGGT-------CGCGGGC 288
|.||.||.||.||.||.|||.||||.|| |..|
BPUM_0716___y 263 --------AAGCTGCCTTCGGTGAGAATGTGACCGTTCATCAACTAG--- 301
BSNT_01283___ 289 CTGACTGAGGAGAATGTTTGCATCGGGGATGT-GTTCAGGCTTGATGAAG 337
.||| |..|||| ||..|.||.||.||||| .|||| .||||..||.|
BPUM_0716___y 302 TTGA---AACAGAA-GTGCGAATTGGCGATGTATTTCA-ACTTGGAGAGG 346
BSNT_01283___ 338 CTGTTGTTCAGGTCAGCCAGCCGCGCCAGCCGTGTGTAAAGC-------- 379
|..|||||.|.||.||.|||||..|.|||||||||||.||.|
BPUM_0716___y 347 CACTTGTTGAAGTGAGTCAGCCAAGGCAGCCGTGTGTGAAACTATCTTTT 396
BSNT_01283___ 380 -----TGGCGAAA--AAGTTTGGTGTAAAAGAAATGGTGCTGAAGGTCCA 422
||||.|.| |||.| ||||||.||| ||.||
BPUM_0716___y 397 AAGCATGGCAACATGAAGCT---TGTAAAGGAA------------GTGCA 431
BSNT_01283___ 423 GCAAACCGGCTATACAGGGTTTTATTTTCGCGTGCTGGAGGAGGGCAGGG 472
||||||.||.|||||.||.||||||||.||.||||||.|.||.|||...|
BPUM_0716___y 432 GCAAACGGGGTATACCGGCTTTTATTTACGGGTGCTGAAAGAAGGCTTAG 481
BSNT_01283___ 473 TGTCTCCCGGCGCGAACCTTGAATTGCTGTCCAGAGGAGAGAAGGGCATC 522
||.||.|.|..||....||||.||| ||..|| ||..|||||
BPUM_0716___y 482 TGCCTGCTGATGCTTCTCTTGTATT---------AGTCGA-AAAAGCATC 521
BSNT_01283___ 523 TCCGTCCAGTTCGCCAACCGCATCA-ACTA----CCATGATGCAAA---- 563
| ||||| |.|| ||||||.|..||
BPUM_0716___y 522 T-------------------CATCATATTACAGTCCATGAAGTGAACGAG 552
BSNT_01283___ 564 ---AAATCTCACCGCCATAGAACTGATTTTAAGT-----GAGGCTGCACT 605
|||| |.||.|| ||| |||| ||||||
BPUM_0716___y 553 GTCAAAT---ATCGTCA---AAC-------AAGTCCAGAGAGGCT----- 584
BSNT_01283___ 606 ATCGGAAAGC------TGGAG----------AGC----GTC--------- 626
|||||| ||.|| ||| |||
BPUM_0716___y 585 ----GAAAGCCGTTCTTGAAGTAGATGCCTTAGCAGATGTCGTGAGGAAG 630
BSNT_01283___ 627 -CTTTATGAAAAAGAAGGACAGGCTGCTGCCGGTTGAATAG 666
||||| |||||...|| |.|.|||..||.||
BPUM_0716___y 631 TCTTTA-GAAAAGCGAG-------TTCAGCCCATTTAA--- 660
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