Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01280 and BPUM_0714
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:52
# Commandline: needle
# -asequence dna-align/BSNT_01280___yflM.1.24716.seq
# -bsequence dna-align/BPUM_0714___nos.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01280___yflM-BPUM_0714___nos.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01280___yflM-BPUM_0714___nos.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01280___yflM
# 2: BPUM_0714___nos
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1159
# Identity: 777/1159 (67.0%)
# Similarity: 777/1159 (67.0%)
# Gaps: 119/1159 (10.3%)
# Score: 2410.0
#
#
#=======================================
BSNT_01280___ 1 TTGGAAGAAA--AAGAAATACTCTGGAACGAAGCGAAAGCGTTTATTGCC 48
||| ||.|| |||||....|.|||||.|||||..||||.||||||.|.
BPUM_0714___n 1 TTG--AGTAATCAAGAAGCGTTGTGGAATGAAGCAGAAGCTTTTATTTCT 48
BSNT_01280___ 49 GCATGCTATCAGGAATTGGGAAAGGAGGAGGAAGTGAA---AGACCGTCT 95
|.|||||||.|.||||||||.|||....|.||||.||| ||..||.||
BPUM_0714___n 49 GTATGCTATGAAGAATTGGGCAAGTCAAATGAAGAGAAGGCAGCACGACT 98
BSNT_01280___ 96 CGAGGACATTAAAAGTGAAATTGAC-CTGACCGGGAGCTATGTACATACG 144
..|.||.||.|||...||||||.|| || |..||||..|||...||.||.
BPUM_0714___n 99 GCATGAAATAAAACAAGAAATTAACTCT-AAAGGGACGTATACTCACACA 147
BSNT_01280___ 145 AAGGAAGAGCTAGAGCACGGAGCGAAAATGGCTTGGAGAAACAGCAACCG 194
.|.||.||..|.|.||||||||||||||||||.|||.|.|||||||||||
BPUM_0714___n 148 CAAGAGGAATTGGCGCACGGAGCGAAAATGGCATGGCGCAACAGCAACCG 197
BSNT_01280___ 195 CTGCATCGGCAGATTGTTCTGG--AATTCGCTGAATGTTATTGACAGACG 242
||||||.|||.|.||.||.||| || |.|||.|||||...|||.|.||
BPUM_0714___n 198 CTGCATTGGCCGTTTATTTTGGTCAA--CCCTGCATGTTCACGACTGCCG 245
BSNT_01280___ 243 AGACGTCCGGAC-GAAGGAGGAAGTGCGTGACGCCCTCTTTCACCATATT 291
..|.||...||| ||| ||.||.|||...||.||.||||||||.||||||
BPUM_0714___n 246 TCATGTGAAGACAGAA-GAAGAGGTGAAAGAGGCACTCTTTCATCATATT 294
BSNT_01280___ 292 GAAACCGCCACCAATAACGGCAAAATCAGACCGACCATTACGATTTTCCC 341
||....||.||.|||||.||.|||||||.|||..||||||||||.||.||
BPUM_0714___n 295 GAGTATGCGACAAATAATGGGAAAATCAAACCATCCATTACGATCTTTCC 344
BSNT_01280___ 342 TCCGGAAGAGAAGGGT---GAAAAGCAAGTCGAGATCTGGAATCATCAGC 388
||| |||.||.|.| .|||||.|||||...||.|..||||||||.|
BPUM_0714___n 345 TCC---AGAAAATGATTCGCAAAAGGAAGTCATCATTTATAATCATCAAC 391
BSNT_01280___ 389 TGATCCGGTACGCTGGATATGAGTCAGACGGAGAA----AGAATCGGCGA 434
|..|.||.||.||.||.|||| ||||||||.| |..||||||||
BPUM_0714___n 392 TCGTTCGTTATGCAGGCTATG----AGACGGAGTATGGTATCATCGGCGA 437
BSNT_01280___ 435 CCCGGCTTC-CTGTTCCCTGA-------CAGCAGCCTGCGAAGAGCTCGG 476
|..|||||| || ||| .|||.| ||.||||..|..||
BPUM_0714___n 438 CGAGGCTTCTCT------TGAATTAACTAAGCTG--TGTGAAGCCCATGG 479
BSNT_01280___ 477 CTGGCGCGGAGAGCGAACGGATTTTGACCTGCTGCCGCTCATTTTTCGCA 526
||||...||.||..|.|||.|||||||..|.|||||.|||||.|||| .|
BPUM_0714___n 480 CTGGAAAGGTGAAGGCACGCATTTTGATATCCTGCCTCTCATGTTTC-AA 528
BSNT_01280___ 527 TGAAAGGCGACGAACAGCCTG-TCTGGTATGAGCTGCCGCGTTCACTTGT 575
..|||| .|..|||.|||.| ||| |||||||||.|||.....|.||||
BPUM_0714___n 529 CTAAAG--AATCAACCGCCAGTTCT-GTATGAGCTACCGAAAGAAATTGT 575
BSNT_01280___ 576 ----GA--TCGAGGTTCCAATCATACATCCGGACAT-CGAGGCGTTTGCT 618
|| ||||| ||||..|||||||| || .||.|..|||..|
BPUM_0714___n 576 CCAAGAAGTCGAG------ATCACCCATCCGGA-ATATGAAGGATTTCGT 618
BSNT_01280___ 619 GATTT-GGAGCTGAAGTGGTACGGCGTGCCTATCATCTCTGATATGAAGC 667
||||| ||| |||||.|||||||.|||.||.||.||..||||||||||..
BPUM_0714___n 619 GATTTAGGA-CTGAAATGGTACGCCGTTCCGATTATTGCTGATATGAAAT 667
BSNT_01280___ 668 TTGAGGTCGGGGGCATTCATTATAATGCCGCGCCATTTAACGGCTGGTAT 717
|.|||.|.||.||.||||||||.|||||.|||||.||.||.|||||||||
BPUM_0714___n 668 TGGAGATTGGCGGTATTCATTACAATGCAGCGCCGTTCAATGGCTGGTAT 717
BSNT_01280___ 718 ATGGGCACGGAGATCGGAGCGAGAAACCTCGCAGATGAAAAGCGGTACGA 767
||||||||.||.||.||.||..|.|||||.||.||||||||.||.|||.|
BPUM_0714___n 718 ATGGGCACAGAAATTGGCGCACGTAACCTAGCCGATGAAAATCGCTACAA 767
BSNT_01280___ 768 CAAGCTGAAAAAAGTAGCGTCCGTGAT--------------CGGCATCGC 803
.|.||||||||||||.||.|| ||| ||.||
BPUM_0714___n 768 TATGCTGAAAAAAGTCGCTTC---GATTTTAGGACTGGACACGACA---- 810
BSNT_01280___ 804 CGCTGATTACAATACG--GATTTATGGAAGGATCAAGCGCTAGTTGAATT 851
.|.|||.|| |.|| ||||||||..||||..|.|||||.||
BPUM_0714___n 811 -------AAGAATGCGTCGCTT--TGGAAGGACAAAGCCATTGTTGAGTT 851
BSNT_01280___ 852 GAATAAAGCTGTGCTGCACTCGTA-TAAAAAGCAGGGTGTCAGCATCGTT 900
||||...||.||.||.||.||.|| ..|.|||||||| ||.|.|||.|||
BPUM_0714___n 852 GAATGTGGCGGTTCTTCATTCTTACCGAGAAGCAGGG-GTGACCATTGTT 900
BSNT_01280___ 901 GACCATCATACAGCGGCAAGCCAGTTTAAACGGTTTGAAGAACAGGAGGA 950
||.||.||||||||.|||...||.||.||||.|||.|||.|.||.||.||
BPUM_0714___n 901 GATCACCATACAGCAGCACATCAATTCAAACAGTTCGAAAAGCAAGAAGA 950
BSNT_01280___ 951 AGAAGCGGGCAGAAAGCTGACGGGAGACTGGACGTGGCTGATTCCGCCAA 1000
|.|.||.|.|.|.|||||.||.||.||||||||.|||||||||||.||..
BPUM_0714___n 951 AAAGGCTGACCGTAAGCTTACTGGGGACTGGACTTGGCTGATTCCACCGG 1000
BSNT_01280___ 1001 TTTCACCCGCTGCCACTCATATCTTCCAC-CGC-TCCTATGATAACTCAA 1048
|.|||||.|||||.||.||.||||||||| .|| | |||||.||..|.|
BPUM_0714___n 1001 TCTCACCAGCTGCGACCCACATCTTCCACAAGCAT--TATGACAATACCA 1048
BSNT_01280___ 1049 TCGTTAAGCCGAACTATTTTTATCAAGATAAGCCTTATGA-GTAA----- 1092
|.||.||||||||.||||||||||||||.|||||.|||.| |.||
BPUM_0714___n 1049 TTGTGAAGCCGAATTATTTTTATCAAGAAAAGCCCTATCATGGAACAGAA 1098
BSNT_01280___ 1092 --------- 1092
BPUM_0714___n 1099 AAAGCCTAG 1107
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