Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05197 and BPUM_0712
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_05197___padC.1.24716.seq
# -bsequence dna-align/BPUM_0712___padC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05197___padC-BPUM_0712___padC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05197___padC-BPUM_0712___padC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05197___padC
# 2: BPUM_0712___padC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 503
# Identity: 382/503 (75.9%)
# Similarity: 382/503 (75.9%)
# Gaps: 34/503 ( 6.8%)
# Score: 1469.0
#
#
#=======================================
BSNT_05197___ 1 ATGGAAAACTTTATCGGAAGCCACATGATTTATACGTATGAAAACGGCTG 50
|||||..|.||..|.|||...||.||||||||||||||||||||.|||||
BPUM_0712___p 1 ATGGATCAATTCGTTGGACTTCATATGATTTATACGTATGAAAATGGCTG 50
BSNT_05197___ 51 GGAATACGAGATTTATATTAAAAACGACCATACAATTGATTATAGAATTC 100
||||||.||||||||.|||||||||||.||.||.||||||||..|.||||
BPUM_0712___p 51 GGAATATGAGATTTACATTAAAAACGATCACACCATTGATTACCGCATTC 100
BSNT_05197___ 101 ATAGCGGAATGGTTGCCGGACGCTGGGTTCGGGATCAGGAAGTGAATATT 150
|||||||||||||||..||.||||||||.||.|||||.||||||||.|||
BPUM_0712___p 101 ATAGCGGAATGGTTGGGGGCCGCTGGGTCCGTGATCAAGAAGTGAACATT 150
BSNT_05197___ 151 GTCAAACTGACAGAAGGCGTATATAAAGTGTCTTGGACAGAGCCGACTGG 200
||.||.||||||.|||||||.||.|||||.|||||||||||.||.|||||
BPUM_0712___p 151 GTAAAGCTGACAAAAGGCGTTTACAAAGTTTCTTGGACAGAACCAACTGG 200
BSNT_05197___ 201 CACGGATGTTTCATTAAACTTTATGCCAAATGAAAAACGCATGCACGGCA 250
.||.||.||.||..|.|||||||||||..|.||||||||||||||.|||.
BPUM_0712___p 201 GACAGACGTCTCTCTGAACTTTATGCCTGAAGAAAAACGCATGCATGGCG 250
BSNT_05197___ 251 TTATTTTCTTCCCGAAATGGGTGCATGAACATCCTGAAATTACGGTTTGC 300
||||.||||||||.||||||||||||||||..||.||.||.||.||||||
BPUM_0712___p 251 TTATATTCTTCCCAAAATGGGTGCATGAACGCCCAGATATCACCGTTTGC 300
BSNT_05197___ 301 TACCAAAATGACCACATTGATTTGATGAAAGAATCCCGCGAAAAATATGA 350
||.|||||||||.||||.|||.|.|||||||||||.||.|||||.||.||
BPUM_0712___p 301 TATCAAAATGACTACATCGATCTTATGAAAGAATCTCGTGAAAAGTACGA 350
BSNT_05197___ 351 AACGTATCCAAAATACGTTGTACCTGAATTTGCGGAAATTACAT---TTC 397
|||.|||||.|||||.|||||.||.|||||||||||.|||||.| |||
BPUM_0712___p 351 AACATATCCTAAATATGTTGTTCCAGAATTTGCGGACATTACGTATATTC 400
BSNT_05197___ 398 ----TG-----AAAAATGAAGGAGTCGACAACGAAGAAGTGATTT----- 433
|| |.|||||| ||| |||.| ||
BPUM_0712___p 401 ATCATGCAGGTATAAATGA------CGA-AACCA---------TTATCGC 434
BSNT_05197___ 434 CGAAGGCTCCTTATGAGGGAATGACAGACGATATTCGCGCGGGAAGATTA 483
|||| ||.||.|||||.||..||||.||.||.||..|.||.|||.||..|
BPUM_0712___p 435 CGAA-GCACCATATGAAGGCTTGACTGATGAAATAAGAGCCGGACGAAAA 483
BSNT_05197___ 484 TAA 486
|||
BPUM_0712___p 484 TAA 486
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