Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01278 and BPUM_0710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:52
# Commandline: needle
# -asequence dna-align/BSNT_01278___citM.1.24716.seq
# -bsequence dna-align/BPUM_0710___citM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01278___citM-BPUM_0710___citM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01278___citM-BPUM_0710___citM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01278___citM
# 2: BPUM_0710___citM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1329
# Identity: 996/1329 (74.9%)
# Similarity: 996/1329 (74.9%)
# Gaps: 57/1329 ( 4.3%)
# Score: 3582.5
#
#
#=======================================
BSNT_01278___ 1 GTGTTAGCAATCTTAGGCTTTCTCATGATGCTTGTGTTTATGGCATTGAT 50
|||.|||||||||||||.|||||.||||||.||||.|||||||..|||||
BPUM_0710___c 1 GTGCTAGCAATCTTAGGATTTCTTATGATGGTTGTATTTATGGTTTTGAT 50
BSNT_01278___ 51 CATGACAAAACGGCTTTCTGTTTTAACAGCATTAGTTTTGACGCCGATTG 100
.|||||.|||||..|.|||||||||||.|||||.||.||.|||||.||||
BPUM_0710___c 51 TATGACGAAACGTATGTCTGTTTTAACGGCATTGGTATTAACGCCAATTG 100
BSNT_01278___ 101 TGTTTGCGCTTATCGCCGGATTTGGATTTACTGAAGTTGGGGACATGATG 150
..|||||.|||||.||.||.|||...|||||.|||.||...||||||||
BPUM_0710___c 101 CATTTGCTCTTATTGCAGGTTTTCATTTTACAGAAATTTCTGACATGAT- 149
BSNT_01278___ 151 ATTTC---GGGGATTCAGCAAGTCGCGCCGACTGCGGTCATGATTATGTT 197
|.|| ||.| |.|||||||||||.|||||.|||||||||||.|||||
BPUM_0710___c 150 -TGTCAAAGGTG-TGCAGCAAGTCGCACCGACAGCGGTCATGATCATGTT 197
BSNT_01278___ 198 TGCGATCTTATATTTTGGAATTATGATTGATACAGGCCTGTTTGATCCAA 247
||||||.|||||.|||||.||||||||||||.|.||..|.||||||||.|
BPUM_0710___c 198 TGCGATTTTATACTTTGGCATTATGATTGATGCTGGTTTATTTGATCCGA 247
BSNT_01278___ 248 TGGTTGGC-AAAATTTTAAGCATGGTCAAAGGAGACCCTTTAAAAATTGT 296
||| |||| ||||||||||.|||.||||||||.||.||||||||||||||
BPUM_0710___c 248 TGG-TGGCAAAAATTTTAAACATTGTCAAAGGCGATCCTTTAAAAATTGT 296
BSNT_01278___ 297 TGTCGGGACAGCGGTTCTTACAATGCTCGTCGC-CTTGGACGGAGATGGC 345
.|||||.|||||.||.||.||.|||||.||.|| ||| ||.|||||.||.
BPUM_0710___c 297 CGTCGGAACAGCTGTCCTGACCATGCTTGTTGCACTT-GATGGAGACGGG 345
BSNT_01278___ 346 TCGACAACGTACATGATTACGACAAGCGCCATGCTTCCGCTCTATTT--G 393
.|.|||||.|||||||||||.||||..||.||||||| |..||||| |
BPUM_0710___c 346 ACAACAACATACATGATTACAACAACAGCGATGCTTC--CATTATTTACG 393
BSNT_01278___ 394 CTGCTAGGCATCCGGCCAATTATCCTGGCGGGAATCGCGGGAGTCGGCAT 443
|||||.||||||||.||.|||||..|.|||||.||.||.|||||||||||
BPUM_0710___c 394 CTGCTTGGCATCCGTCCGATTATTTTAGCGGGGATTGCCGGAGTCGGCAT 443
BSNT_01278___ 444 GGGAATCATGAACACAATTCCATGGGGCGGTGCGACGCCGAGGGCGGCGA 493
||||||.|||||.||.|||||||||||.||.||.||.||.||.|||||.|
BPUM_0710___c 444 GGGAATTATGAATACGATTCCATGGGGAGGAGCCACACCTAGAGCGGCAA 493
BSNT_01278___ 494 GTGCGCTGGGGGTTGATCCAGCTGAGCTTACA---GGGCCGATGATTCCT 540
||||.||.||.||.||||||.| .|||..| ||.|||||||||||.
BPUM_0710___c 494 GTGCACTTGGCGTGGATCCATC---ACTTTTATTTGGCCCGATGATTCCA 540
BSNT_01278___ 541 GTCAT---TGCAAGCGGGATGCTTT--GTATGGTGGCGGTTGCGTATGTG 585
||||| |||| ||| |.||| |.|||.|.|.|||.||.||..|.
BPUM_0710___c 541 GTCATTGGTGCA---GGG--GTTTTGAGCATGATTGTGGTGGCATACTTT 585
BSNT_01278___ 586 CTTGGAAAAGCGGAACGAAAGCGCCTTGGTGTGATTGAACTGAAACAGCC 635
|||||.||..|.|||.|||||||.||||||||.||||||||..|||||||
BPUM_0710___c 586 CTTGGGAAGTCTGAAAGAAAGCGTCTTGGTGTCATTGAACTCGAACAGCC 635
BSNT_01278___ 636 -AGCCAATGCCAATGAACCGGCGGCAGCGGTTGAAGATGAGTGGAAGCGG 684
|..| ||||.||||||..|||.||.||..|..|.|||||....|||||.
BPUM_0710___c 636 GATTC-ATGCAAATGAAATGGCAGCGGCACTACAGGATGACATCAAGCGA 684
BSNT_01278___ 685 CCGAAGCTTTGGTGGTTCAATTTATTGTTAACGCTTTC--TTTAATAGGA 732
|||||.|||||||||||.|| ..||||||||.| |.|.||.||
BPUM_0710___c 685 CCGAAACTTTGGTGGTTTAA------CCTAACGCTTACGTTGTTATTGG- 727
BSNT_01278___ 733 TG-----TTTAGTATCGGGTAAAGTTAGTTTAACCGTACTGTTTGTCATT 777
|| |.|.||.||.||.|||||.||.|||||.||.||.|||||..||
BPUM_0710___c 728 TGCTCCTTCTCGTCTCAGGAAAAGTCAGCTTAACAGTCCTATTTGTTCTT 777
BSNT_01278___ 778 GCGTTTTGTATTGCGCTGATTGTGAATTATCCCAATCTCGAGCATCAGAG 827
||.||.|||.|.||..|.||.|||||.|||||.||.||.||.||.|||.|
BPUM_0710___c 778 GCTTTCTGTGTAGCAATTATCGTGAACTATCCGAACCTTGAACAGCAGCG 827
BSNT_01278___ 828 ACAGCGCATCGCGGCGCATTCCAGCAACGTGCTGGCTATCGGTTCAATGA 877
..||||.||.|||||.||.||.|.||||||..|.||.||.|.|||.||||
BPUM_0710___c 828 TGAGCGGATTGCGGCTCACTCAACCAACGTCTTAGCGATTGCTTCCATGA 877
BSNT_01278___ 878 TTTTTGCCGCGGGGGTGTTCACGGGGATTTTGACAGGCACGAAAATGGTT 927
|.|||||.||.|||||.||.||.||.||.||.||.|||||||||||||||
BPUM_0710___c 878 TCTTTGCAGCAGGGGTTTTTACAGGCATCTTAACTGGCACGAAAATGGTT 927
BSNT_01278___ 928 GATGAAATGGCGATCTCGCTCGTGTCCATG--ATACCGGAACAAATGGGC 975
||||||||||||||.|||.|.||.|| || ||.||.||.||..|.|||
BPUM_0710___c 928 GATGAAATGGCGATATCGATTGTATC--TGCCATTCCTGAGCAGCTTGGC 975
BSNT_01278___ 976 GGATTGATCCCAGCGATTGTTGC-CTTAACAAGCGGTATTTTCACATTTT 1024
||.||.||.||.|..|||||.|| ||| ||.|||||.||.||.||.||.|
BPUM_0710___c 976 GGCTTTATACCGGTTATTGTGGCGCTT-ACGAGCGGGATATTTACCTTCT 1024
BSNT_01278___ 1025 TGATGCCGAATGACGCGTATTTCTACGGGGTGCTGCCGATTTTATCAGAA 1074
|.|||||||||||.||.||.||.||||||||.||||||||..||||.|||
BPUM_0710___c 1025 TTATGCCGAATGATGCATACTTTTACGGGGTCCTGCCGATCCTATCTGAA 1074
BSNT_01278___ 1075 ACAGCTGTCGCATACGGTGTGGATAAAGTGGAAATTGCCAGAGCCTCTAT 1124
|||||.|..|||||||||||.||||.|.|.|||||.||.|||||||||||
BPUM_0710___c 1075 ACAGCGGCAGCATACGGTGTTGATACAATTGAAATCGCAAGAGCCTCTAT 1124
BSNT_01278___ 1125 TATCGGCCAGCCGATTCATATGCTGAGTCCGCTTGTGCCATCCACTCATT 1174
|||.||||||||||||||||||.|.||.||.|||||.|||||||||||||
BPUM_0710___c 1125 TATTGGCCAGCCGATTCATATGTTAAGCCCACTTGTACCATCCACTCATT 1174
BSNT_01278___ 1175 TGCTTGTCGGACTCGTCGGAGTTTCTATT-GATGACCATCAAAAATTCGC 1223
|.|||||.|||||.||.||.||.|| ||| |||.|.|||||.||.||.|.
BPUM_0710___c 1175 TACTTGTTGGACTAGTTGGTGTATC-ATTGGATCAGCATCAGAAGTTTGG 1223
BSNT_01278___ 1224 ATTGAAATGGGCGGTTCTCGCAGTGATCGTCATGACGGCTATCGCTCTAT 1273
..||||||||||.||.||.|||||..|||.||||||||..||..|..||.
BPUM_0710___c 1224 GATGAAATGGGCTGTGCTTGCAGTTGTCGCCATGACGGTCATGTCGGTAC 1273
BSNT_01278___ 1274 TGATCGGTGCGATCTCTATTTCCGTATGA 1302
|.||.||.||.|||||.|||| .|||.
BPUM_0710___c 1274 TCATTGGGGCCATCTCCATTT-GGTAA-- 1299
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