Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01265 and BPUM_0695
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_01265___yfmL.1.24716.seq
# -bsequence dna-align/BPUM_0695___yfmL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01265___yfmL-BPUM_0695___yfmL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01265___yfmL-BPUM_0695___yfmL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01265___yfmL
# 2: BPUM_0695___yfmL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity: 774/1191 (65.0%)
# Similarity: 774/1191 (65.0%)
# Gaps: 108/1191 ( 9.1%)
# Score: 2323.5
#
#
#=======================================
BSNT_01265___ 1 ATGACGCAAACTTGGCCATTTTT-ACATAATGCACAATCATTTATACAAG 49
||||...|||.||||.||||||| |.|.|| |||.|..|||||||.||||
BPUM_0695___y 1 ATGATAGAAAATTGGGCATTTTTGAAAGAA-GCAAAGCCATTTATTCAAG 49
BSNT_01265___ 50 AGAATTGGAGTGCTTCC--------GGCTTTCAAACGCCAACCCCTGTTC 91
|||| ||||| |||||..|||..|||||..||.|.|
BPUM_0695___y 50 AGAA--------CTTCCAATCGGCTGGCTTCGAAAAACCAACAGCTATAC 91
BSNT_01265___ 92 AAGAGCAGGCAGCCCAGCTGATCATGG---ACGGA-AAG---GATGTCAT 134
||||..|..|||| |..|||| ||||| ||| |||||.||
BPUM_0695___y 92 AAGAAAAAACAGC-------AGAATGGATTACGGAGAAGCGTGATGTGAT 134
BSNT_01265___ 135 CGCGGAATCGCCGACAGGCACAGGCAAGACGCTGGCGTATGCGCTGCCGG 184
|||.||||||||.||.||.||.||.|||||.||||||||||.|.|||||.
BPUM_0695___y 135 CGCAGAATCGCCTACGGGAACGGGGAAGACACTGGCGTATGTGTTGCCGC 184
BSNT_01265___ 185 TCTTGGAGCGGATCAAACCAGAGCAA----------AAGCATCCGCAGGC 224
|.|| |||..|.|.|.| |||||.||.||.|.
BPUM_0695___y 185 TTTT----------AAATAAAATCGATGTGAATATCAAGCACCCACAAGT 224
BSNT_01265___ 225 GGTGATTTTAGCGCCTTCCCGTGAGCTGGTGATGCAGATTTTTCAGGTGA 274
..|.||.||.||.||.||..|.|||||.||||||||.||||||.|.||..
BPUM_0695___y 225 CTTAATCTTGGCACCATCAAGAGAGCTTGTGATGCAAATTTTTGATGTCG 274
BSNT_01265___ 275 TTCAGGATTGGAAAGCGGGCTCAGAGCTGCGCGCGGCTTCCTTAATCGGC 324
|.||.||.|..|||...||.|||||..|....||||..|||||.||.||.
BPUM_0695___y 275 TGCAAGAGTTTAAACAAGGATCAGACATCAAAGCGGTCTCCTTGATTGGT 324
BSNT_01265___ 325 GGGGCGAATGTGAAGAAGCAGGTCGAAAAGCTGAAGAAACATCCGCATAT 374
||.||.||..|.||.||.|||...|||||.||.||.|||||.|||.|.||
BPUM_0695___y 325 GGAGCAAACATCAAAAAACAGCAAGAAAAACTAAAAAAACACCCGAACAT 374
BSNT_01265___ 375 CATCGTCGGCACGCCAGGCAGGGTATTTGAACTGATTAAAGCAAAGAAAC 424
|.|.||||..||.||.||..|.|||...|||.|.||.|||...|||||||
BPUM_0695___y 375 CGTTGTCGCAACACCTGGGCGTGTACAAGAATTAATCAAAATGAAGAAAC 424
BSNT_01265___ 425 TCAAAATGCATGAAGTGAAAACGATTGTACTTGATGAAGCGGATCAGCTT 474
|.||||||||.|||||.|||||.||.||.||.||||||||.|||||||||
BPUM_0695___y 425 TGAAAATGCACGAAGTCAAAACAATCGTGCTAGATGAAGCAGATCAGCTT 474
BSNT_01265___ 475 ATCCTGCCGGAGCATCGCGAGACGATCAAACAAATTATTAAAACGACATT 524
.|..||||.||||||....|.||||||.||...||.||||||.|.|||.|
BPUM_0695___y 475 CTTGTGCCAGAGCATATGAAAACGATCCAAGCGATCATTAAATCCACACT 524
BSNT_01265___ 525 AAGAGACCGCCAGCTTCTATGTTTTTCCGCGACACTCAAAAAGGAAACAG 574
||.|||..|.||..|.||.||||||||.|||||..|.|||.|.|||||.|
BPUM_0695___y 525 AAAAGAAAGACAAATCCTTTGTTTTTCTGCGACCTTGAAAGACGAAACGG 574
BSNT_01265___ 575 AGGATGTGCTCCGCGAATTGGCGCAAGAGCCTGAGGTGTTGAA----GGT 620
...|..||.|....|||.||.|....||.||.||.||.||||| |.|
BPUM_0695___y 575 TTCAACTGATTAAAGAAATGACATCTGAACCAGAAGTATTGAAAATTGCT 624
BSNT_01265___ 621 ACAGCGAAGCAAGGTGGAGGCAGGGAAAGTGAAACATCAATACCTGATTT 670
|||||..|||..||.||...||||||...|||..|.||.|||.|.|
BPUM_0695___y 625 ----CGAAGTGAGGAAGAAGCGCAGAAAGTAGGACACTATTATCTGTTAT 670
BSNT_01265___ 671 GCGACCAGCGCGACAAAGTGAAGCTGCTGCAAAAGCTGTCAAGGCTTGAA 720
|.||||||||.||||||||.||.||.|||||||||||.|||.|||||||.
BPUM_0695___y 671 GTGACCAGCGTGACAAAGTAAAACTACTGCAAAAGCTATCACGGCTTGAG 720
BSNT_01265___ 721 GGCATGCAGGCACTCGTATTTGTGAGAGACATTGGCAACCTGAGTGTATA 770
|.||||||.||.|||||.||||||.|.||.|||...||.||.||..|.||
BPUM_0695___y 721 GACATGCATGCGCTCGTTTTTGTGCGTGATATTACGAATCTAAGCATTTA 770
BSNT_01265___ 771 TGCGGAAAAACTGGCATATCACCACGTTGAACTCGGCGTTTTGCACAGTG 820
|||.||.|||.|.||.||||||||.||.||.||.||.||..|.||.||||
BPUM_0695___y 771 TGCAGAGAAATTAGCGTATCACCATGTCGACCTTGGTGTCCTTCATAGTG 820
BSNT_01265___ 821 AAGCGAAAAAAATGGAGAGGGCAAAAATCATTGCCGCATTCGAAGACGGA 870
|||||||||||...|||.|.||.|..|||.|....|.|||.|||.|..|.
BPUM_0695___y 821 AAGCGAAAAAAGCAGAGCGAGCTATCATCTTAAAGGAATTTGAACAGCGT 870
BSNT_01265___ 871 GAGTTTCCTCTT-TTATTGGCGACTGACATTGCCGCACGCGGTTTAGACA 919
||.||.||.||| ||.|| ||.||.||.||.||.|||.|.||..|.||.|
BPUM_0695___y 871 GAATTCCCGCTTCTTCTT-GCAACAGATATCGCAGCAAGAGGGATCGATA 919
BSNT_01265___ 920 TTGAAAACCTGCCATACGTGATTCATGCTGATATTCCTG----ATGAAGA 965
||||..|.|||||.|||||.||.|||||.|| |||| |.|||||
BPUM_0695___y 920 TTGACGATCTGCCTTACGTAATCCATGCCGA----CCTGCCAAACGAAGA 965
BSNT_01265___ 966 TGGCTATGTCCACAGATCAGGACGAACAGGCCGGGCCGGAAAAGAAGGCA 1015
.||||||.|.|||.|.|||||..||||.||.||.||.||||||||||
BPUM_0695___y 966 AGGCTATATTCACCGTTCAGGCAGAACCGGTCGAGCAGGAAAAGAAG--- 1012
BSNT_01265___ 1016 ACGTGCTG-----AGCCTTGTGAC----GAAATTGGAGGAATCTAAGCTG 1056
|.|||| |||||.||.|| .|| |||.|..|.|.|||.
BPUM_0695___y 1013 --GAGCTGTCATCAGCCTCGTCACACCTCAA----GAGCATACAACGCTC 1056
BSNT_01265___ 1057 AAAAAAATGGCGAAGAAGCTTGGTGTTGAAC-TGAGTGAAGCTGTGTAT- 1104
||||||||||||||.|||||...|.||...| |.|| |||..|||.|||
BPUM_0695___y 1057 AAAAAAATGGCGAAAAAGCTACATCTTTCGCTTCAG-GAAATTGTTTATA 1105
BSNT_01265___ 1105 -GC-AGGCGGAAAACTGAA------GACGAA------ATAA 1131
|| |||| .|||||.| |.|||| ||||
BPUM_0695___y 1106 AGCAAGGC---CAACTGCATCTTGCGCCGAAGCAAGCATAA 1143
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