Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01265 and BPUM_0695

See Amino acid alignment / Visit BSNT_01265 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_01265___yfmL.1.24716.seq
#    -bsequence dna-align/BPUM_0695___yfmL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01265___yfmL-BPUM_0695___yfmL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01265___yfmL-BPUM_0695___yfmL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01265___yfmL
# 2: BPUM_0695___yfmL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity:     774/1191 (65.0%)
# Similarity:   774/1191 (65.0%)
# Gaps:         108/1191 ( 9.1%)
# Score: 2323.5
# 
#
#=======================================

BSNT_01265___      1 ATGACGCAAACTTGGCCATTTTT-ACATAATGCACAATCATTTATACAAG     49
                     ||||...|||.||||.||||||| |.|.|| |||.|..|||||||.||||
BPUM_0695___y      1 ATGATAGAAAATTGGGCATTTTTGAAAGAA-GCAAAGCCATTTATTCAAG     49

BSNT_01265___     50 AGAATTGGAGTGCTTCC--------GGCTTTCAAACGCCAACCCCTGTTC     91
                     ||||        |||||        |||||..|||..|||||..||.|.|
BPUM_0695___y     50 AGAA--------CTTCCAATCGGCTGGCTTCGAAAAACCAACAGCTATAC     91

BSNT_01265___     92 AAGAGCAGGCAGCCCAGCTGATCATGG---ACGGA-AAG---GATGTCAT    134
                     ||||..|..||||       |..||||   ||||| |||   |||||.||
BPUM_0695___y     92 AAGAAAAAACAGC-------AGAATGGATTACGGAGAAGCGTGATGTGAT    134

BSNT_01265___    135 CGCGGAATCGCCGACAGGCACAGGCAAGACGCTGGCGTATGCGCTGCCGG    184
                     |||.||||||||.||.||.||.||.|||||.||||||||||.|.|||||.
BPUM_0695___y    135 CGCAGAATCGCCTACGGGAACGGGGAAGACACTGGCGTATGTGTTGCCGC    184

BSNT_01265___    185 TCTTGGAGCGGATCAAACCAGAGCAA----------AAGCATCCGCAGGC    224
                     |.||          |||..|.|.|.|          |||||.||.||.|.
BPUM_0695___y    185 TTTT----------AAATAAAATCGATGTGAATATCAAGCACCCACAAGT    224

BSNT_01265___    225 GGTGATTTTAGCGCCTTCCCGTGAGCTGGTGATGCAGATTTTTCAGGTGA    274
                     ..|.||.||.||.||.||..|.|||||.||||||||.||||||.|.||..
BPUM_0695___y    225 CTTAATCTTGGCACCATCAAGAGAGCTTGTGATGCAAATTTTTGATGTCG    274

BSNT_01265___    275 TTCAGGATTGGAAAGCGGGCTCAGAGCTGCGCGCGGCTTCCTTAATCGGC    324
                     |.||.||.|..|||...||.|||||..|....||||..|||||.||.||.
BPUM_0695___y    275 TGCAAGAGTTTAAACAAGGATCAGACATCAAAGCGGTCTCCTTGATTGGT    324

BSNT_01265___    325 GGGGCGAATGTGAAGAAGCAGGTCGAAAAGCTGAAGAAACATCCGCATAT    374
                     ||.||.||..|.||.||.|||...|||||.||.||.|||||.|||.|.||
BPUM_0695___y    325 GGAGCAAACATCAAAAAACAGCAAGAAAAACTAAAAAAACACCCGAACAT    374

BSNT_01265___    375 CATCGTCGGCACGCCAGGCAGGGTATTTGAACTGATTAAAGCAAAGAAAC    424
                     |.|.||||..||.||.||..|.|||...|||.|.||.|||...|||||||
BPUM_0695___y    375 CGTTGTCGCAACACCTGGGCGTGTACAAGAATTAATCAAAATGAAGAAAC    424

BSNT_01265___    425 TCAAAATGCATGAAGTGAAAACGATTGTACTTGATGAAGCGGATCAGCTT    474
                     |.||||||||.|||||.|||||.||.||.||.||||||||.|||||||||
BPUM_0695___y    425 TGAAAATGCACGAAGTCAAAACAATCGTGCTAGATGAAGCAGATCAGCTT    474

BSNT_01265___    475 ATCCTGCCGGAGCATCGCGAGACGATCAAACAAATTATTAAAACGACATT    524
                     .|..||||.||||||....|.||||||.||...||.||||||.|.|||.|
BPUM_0695___y    475 CTTGTGCCAGAGCATATGAAAACGATCCAAGCGATCATTAAATCCACACT    524

BSNT_01265___    525 AAGAGACCGCCAGCTTCTATGTTTTTCCGCGACACTCAAAAAGGAAACAG    574
                     ||.|||..|.||..|.||.||||||||.|||||..|.|||.|.|||||.|
BPUM_0695___y    525 AAAAGAAAGACAAATCCTTTGTTTTTCTGCGACCTTGAAAGACGAAACGG    574

BSNT_01265___    575 AGGATGTGCTCCGCGAATTGGCGCAAGAGCCTGAGGTGTTGAA----GGT    620
                     ...|..||.|....|||.||.|....||.||.||.||.|||||    |.|
BPUM_0695___y    575 TTCAACTGATTAAAGAAATGACATCTGAACCAGAAGTATTGAAAATTGCT    624

BSNT_01265___    621 ACAGCGAAGCAAGGTGGAGGCAGGGAAAGTGAAACATCAATACCTGATTT    670
                         |||||..|||..||.||...||||||...|||..|.||.|||.|.|
BPUM_0695___y    625 ----CGAAGTGAGGAAGAAGCGCAGAAAGTAGGACACTATTATCTGTTAT    670

BSNT_01265___    671 GCGACCAGCGCGACAAAGTGAAGCTGCTGCAAAAGCTGTCAAGGCTTGAA    720
                     |.||||||||.||||||||.||.||.|||||||||||.|||.|||||||.
BPUM_0695___y    671 GTGACCAGCGTGACAAAGTAAAACTACTGCAAAAGCTATCACGGCTTGAG    720

BSNT_01265___    721 GGCATGCAGGCACTCGTATTTGTGAGAGACATTGGCAACCTGAGTGTATA    770
                     |.||||||.||.|||||.||||||.|.||.|||...||.||.||..|.||
BPUM_0695___y    721 GACATGCATGCGCTCGTTTTTGTGCGTGATATTACGAATCTAAGCATTTA    770

BSNT_01265___    771 TGCGGAAAAACTGGCATATCACCACGTTGAACTCGGCGTTTTGCACAGTG    820
                     |||.||.|||.|.||.||||||||.||.||.||.||.||..|.||.||||
BPUM_0695___y    771 TGCAGAGAAATTAGCGTATCACCATGTCGACCTTGGTGTCCTTCATAGTG    820

BSNT_01265___    821 AAGCGAAAAAAATGGAGAGGGCAAAAATCATTGCCGCATTCGAAGACGGA    870
                     |||||||||||...|||.|.||.|..|||.|....|.|||.|||.|..|.
BPUM_0695___y    821 AAGCGAAAAAAGCAGAGCGAGCTATCATCTTAAAGGAATTTGAACAGCGT    870

BSNT_01265___    871 GAGTTTCCTCTT-TTATTGGCGACTGACATTGCCGCACGCGGTTTAGACA    919
                     ||.||.||.||| ||.|| ||.||.||.||.||.|||.|.||..|.||.|
BPUM_0695___y    871 GAATTCCCGCTTCTTCTT-GCAACAGATATCGCAGCAAGAGGGATCGATA    919

BSNT_01265___    920 TTGAAAACCTGCCATACGTGATTCATGCTGATATTCCTG----ATGAAGA    965
                     ||||..|.|||||.|||||.||.|||||.||    ||||    |.|||||
BPUM_0695___y    920 TTGACGATCTGCCTTACGTAATCCATGCCGA----CCTGCCAAACGAAGA    965

BSNT_01265___    966 TGGCTATGTCCACAGATCAGGACGAACAGGCCGGGCCGGAAAAGAAGGCA   1015
                     .||||||.|.|||.|.|||||..||||.||.||.||.||||||||||   
BPUM_0695___y    966 AGGCTATATTCACCGTTCAGGCAGAACCGGTCGAGCAGGAAAAGAAG---   1012

BSNT_01265___   1016 ACGTGCTG-----AGCCTTGTGAC----GAAATTGGAGGAATCTAAGCTG   1056
                       |.||||     |||||.||.||    .||    |||.|..|.|.|||.
BPUM_0695___y   1013 --GAGCTGTCATCAGCCTCGTCACACCTCAA----GAGCATACAACGCTC   1056

BSNT_01265___   1057 AAAAAAATGGCGAAGAAGCTTGGTGTTGAAC-TGAGTGAAGCTGTGTAT-   1104
                     ||||||||||||||.|||||...|.||...| |.|| |||..|||.||| 
BPUM_0695___y   1057 AAAAAAATGGCGAAAAAGCTACATCTTTCGCTTCAG-GAAATTGTTTATA   1105

BSNT_01265___   1105 -GC-AGGCGGAAAACTGAA------GACGAA------ATAA   1131
                      || ||||   .|||||.|      |.||||      ||||
BPUM_0695___y   1106 AGCAAGGC---CAACTGCATCTTGCGCCGAAGCAAGCATAA   1143


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