Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01260 and BPUM_0693
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_01260___yfmO.1.24716.seq
# -bsequence dna-align/BPUM_0693___yfmO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01260___yfmO-BPUM_0693___yfmO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01260___yfmO-BPUM_0693___yfmO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01260___yfmO
# 2: BPUM_0693___yfmO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1245
# Identity: 859/1245 (69.0%)
# Similarity: 859/1245 (69.0%)
# Gaps: 108/1245 ( 8.7%)
# Score: 2749.0
#
#
#=======================================
BSNT_01260___ 1 ATGGA-TAAGACAACACAAGTG---AATCAGAAAACGGGTTTGCTCAGCC 46
|||.| .|||| |.||||| ||.|||...||..||.|.||.||.|
BPUM_0693___y 1 ATGAAGGAAGA----AGAAGTGTTAAAACAGCGTACAAGTCTACTTAGGC 46
BSNT_01260___ 47 AGCCAAAAGCGGTATGGGCTGTCGCGTTTGCCTGTGTGATTTCCTTTATG 96
||||.||.||.||.||||||||.||.|||||.|||||||||||.||||||
BPUM_0693___y 47 AGCCGAAGGCCGTCTGGGCTGTTGCCTTTGCATGTGTGATTTCATTTATG 96
BSNT_01260___ 97 GGAATCGGGCTGGTCGATCCAATTCTTCCGGCCATTGCCGCACAACTACA 146
||.||.||.||.||.|||||||||.|.|||||.|||||..|||||.||.|
BPUM_0693___y 97 GGGATAGGACTTGTGGATCCAATTTTGCCGGCGATTGCATCACAATTAGA 146
BSNT_01260___ 147 TGCTTCACCTAGTGAAGTATCACTCTTGTTTACAAGTTATTTGCTTGTAA 196
|||.||.||.|||.|.||.||.||.||||||||.|||||.||.|||||.|
BPUM_0693___y 147 TGCATCTCCAAGTCAGGTCTCTCTGTTGTTTACGAGTTACTTACTTGTGA 196
BSNT_01260___ 197 CCGGATTTATGATGTTTTTCTCAGGAGCCATT---TCCAGCCGCATCGGC 243
||||||||.||||||||||..|.|| |.|| ||.||.||.||.||.
BPUM_0693___y 197 CCGGATTTGTGATGTTTTTTACCGG---CTTTCTCTCTAGTCGAATTGGT 243
BSNT_01260___ 244 GCGAAATGGACATTAATTCTCGGACTTATTTTTATTATTGTGTTTGCGGG 293
||.||||||||||||.|..||||||||||||||||||||||.|||.| .
BPUM_0693___y 244 GCAAAATGGACATTATTAATCGGACTTATTTTTATTATTGTCTTTTC--T 291
BSNT_01260___ 294 GCTT--GGCGGCAGCTC----AAGCTCAATCGCTCAGTTAGTCGGCTATC 337
|||| |||||.|.||| |.|.|.|| |.|.|||.||||||.|.
BPUM_0693___y 292 GCTTTAGGCGGTACCTCTTCAACGATTAA----TGAATTAATCGGCTTTA 337
BSNT_01260___ 338 GCGGCGGCTGGGG-ATTAGGGAATGCTTTGTTTATTTCAACAGCGCTTGC 386
|.|||||.||||| ||| ||||||||.||.||.||||||||.||.||..|
BPUM_0693___y 338 GAGGCGGATGGGGTATT-GGGAATGCCTTATTCATTTCAACGGCTCTCTC 386
BSNT_01260___ 387 GGTCATCGTTGGTGTATCAGTCGGAGGAAGCGCCCAAGCGATTATTTTGT 436
.|||||.||.|||||.||.||.|||||.||.||..|.||.||||||||.|
BPUM_0693___y 387 TGTCATTGTCGGTGTGTCTGTTGGAGGTAGTGCGAAGGCCATTATTTTAT 436
BSNT_01260___ 437 ATGAGGCTGCGCTCGGTCTCGGGATTTCCGTCGGGCCGCTTGC-AGGCGG 485
|.|||||.||.||.|||||.||||||||.||.||.|||| ||| ||||||
BPUM_0693___y 437 ACGAGGCCGCACTAGGTCTTGGGATTTCAGTTGGACCGC-TGCTAGGCGG 485
BSNT_01260___ 486 AGAGCTTGGAAGCATTTCATGGCGCGCACCGTTTTTCGGAGTATCTGTCC 535
|||||||||||..||.||.|||||||.|||.||.||.||.||..|.|||.
BPUM_0693___y 486 AGAGCTTGGAACGATCTCTTGGCGCGGACCATTCTTTGGTGTTGCGGTCT 535
BSNT_01260___ 536 TGATGTTTATTACGTTAATCGCGATTTCTTTCATGCTT---CCGAAATTG 582
|.|||.||.||.|..|..|.||.|||.|.||.|||||| |||| ||
BPUM_0693___y 536 TAATGCTTGTTGCTCTTCTAGCCATTACGTTTATGCTTCCACCGA---TG 582
BSNT_01260___ 583 CCGAAACCGGCGAAACGCGTCGGT----GTGTTTGATGCGATGAAGGCGC 628
|..|||||...|||| ..||| .|.|||||.||..|...||||.
BPUM_0693___y 583 CAAAAACCTCAGAAA----AAGGTAAAATTATTTGAGGCTGTCGGGGCGT 628
BSNT_01260___ 629 TAAAATATAAAGGCCTTTTAACAATGGCGGTAT---CGGCATTCTTATAC 675
|||||||||||||.||.|||||.||||| || |.||.||.||||||
BPUM_0693___y 629 TAAAATATAAAGGGCTGTTAACGATGGC---ATCTGCTGCTTTTTTATAC 675
BSNT_01260___ 676 AACTTTGGATTTTTTATTT-TGCTT---GCTTATTCTCCGTTCGTTCTGG 721
||.||||| |||.||| ||||| ||.|||||.||.||.||.||..
BPUM_0693___y 676 AATTTTGG----TTTCTTTGTGCTTTTAGCGTATTCGCCATTTGTGCTTC 721
BSNT_01260___ 722 ATTTAGATGAACACGGTCTTGGATATGTCTTCTTCGGCTGGGGCCTTCTG 771
||.|.|||||.||.||||||||.||||||||.||.||.|||||.||..|.
BPUM_0693___y 722 ATCTGGATGAGCATGGTCTTGGTTATGTCTTTTTTGGGTGGGGGCTATTT 771
BSNT_01260___ 772 CTGGCGATTACGTCAGTCT--TTACGGCGCCGCTCGTGCA---CAAAGCG 816
.||||..|.||.||.|||| ||| |||||..||.|.|| ||| |
BPUM_0693___y 772 TTGGCCGTCACATCCGTCTTCTTA--GCGCCAGTCATTCATCGCAA---G 816
BSNT_01260___ 817 CTGGGCACAGTGCGTTCGCTCGTCGTTCTCTTT--ATCGCCTTTGCGGCT 864
||.||.|||.||..|||.||.||.||.||.||| .||| |||||.|..
BPUM_0693___y 817 CTTGGAACATTGACTTCTCTTGTGGTACTTTTTGCTTCG--TTTGCTGTG 864
BSNT_01260___ 865 ATTCTCGTTAT----TATGGGGATCTGGACAGACCATCAGACTTTGATTA 910
||| |||| |||.||.||||||| |.|||.|..||| |.
BPUM_0693___y 865 ATT----TTATTCGGTATTGGCATCTGGA-----CTTCACATGTTG--TC 903
BSNT_01260___ 911 TT--ACAT-----GTATCGTTGTCGCTGGTGCTGTTCTCGGTATGGTGAA 953
.| .||| ||||.|||.|.|||||.|...||||.||.|||.|.||
BPUM_0693___y 904 GTCGTCATCTGCGGTATTGTTATTGCTGGGGGAATTCTTGGCATGATCAA 953
BSNT_01260___ 954 TACGATCATGACAACCGCTGTGATGGGTTCTGCGCCGGTTGAACGTTCAA 1003
|||..|..|.||.||||||||||||||.||.||.||.|||||.|||||.|
BPUM_0693___y 954 TACAGTGCTCACGACCGCTGTGATGGGATCAGCACCAGTTGAGCGTTCCA 1003
BSNT_01260___ 1004 TCGCGTCTTCAGCCTACAGCTCAGTCCGCTTCATCGGCGGCGCGCTCGCT 1053
|.||.||.||..|.|||||..|.||.||.||.||.||.||||||.|.|||
BPUM_0693___y 1004 TTGCTTCATCCTCTTACAGTGCTGTGCGGTTTATTGGGGGCGCGATTGCT 1053
BSNT_01260___ 1054 CCGTGGATTGCAGGAATGCTGTCAGAACACTT-TACTGCAAGCACACCAT 1102
||.||||||||.||..|.||..|.||| .||| |||.||.|||||.||.|
BPUM_0693___y 1054 CCTTGGATTGCCGGCGTACTTGCTGAA-TCTTATACAGCGAGCACCCCTT 1102
BSNT_01260___ 1103 A-TACAGTAGGCGGAATCGTCGTTTTTGTCGGCATGCTTGTCCTTCTCAT 1151
| || .||.||.||....||||||.|..|.||||||.||.||||.||.||
BPUM_0693___y 1103 ACTA-TGTTGGGGGGGCTGTCGTTCTGTTGGGCATGATTATCCTGCTAAT 1151
BSNT_01260___ 1152 GGGACGTAAACATCTTGCTGGA-----ATTAAGGCGGGGCATTAA 1191
.||.|||||.|||||| | |||.|.||.||.||||||
BPUM_0693___y 1152 TGGTCGTAAGCATCTT-----ATCCATATTCAAGCAGGTCATTAA 1191
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