Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01259 and BPUM_0692
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01259___yfmP.1.24716.seq
# -bsequence dna-align/BPUM_0692___yfmP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01259___yfmP-BPUM_0692___yfmP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01259___yfmP-BPUM_0692___yfmP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01259___yfmP
# 2: BPUM_0692___yfmP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity: 316/454 (69.6%)
# Similarity: 316/454 (69.6%)
# Gaps: 59/454 (13.0%)
# Score: 1035.0
#
#
#=======================================
BSNT_01259___ 1 TTGGAATGGATGAAGATTGATCAAGTGGCCAAAAGAAGCGGGCTGACAAA 50
.||||.||||||||.||||||||||||||.|||||||||||.|||||.||
BPUM_0692___y 1 ATGGATTGGATGAAAATTGATCAAGTGGCGAAAAGAAGCGGACTGACGAA 50
BSNT_01259___ 51 GCGGACCATCCGGTTTTATGAAGAAATCGGCTTGATT-CCGGCGCCGAAA 99
.|||||.||.||.||.|||||||||||.|| ||.||| .|.||.||.||.
BPUM_0692___y 51 ACGGACGATTCGTTTCTATGAAGAAATTGG-TTTATTATCAGCACCAAAG 99
BSNT_01259___ 100 CGGACAGACGGCGGTGTAAGGCTTTATTCAGAGGATGATATGGAGGAGCT 149
||||||||.||||||||.|||||.||.||||||||.||.|||||.||.||
BPUM_0692___y 100 CGGACAGAGGGCGGTGTCAGGCTGTACTCAGAGGACGACATGGAAGAACT 149
BSNT_01259___ 150 TGAGAAAGTCATCAGCA--CAAAAGAGGTGCTCGGTTTTTCCCTTCAGGA 197
.||.|||||||| ||| ||||||||||.|||||||||||..|.||.||
BPUM_0692___y 150 AGAAAAAGTCAT--GCAGGCAAAAGAGGTACTCGGTTTTTCTTTACAAGA 197
BSNT_01259___ 198 GCTTCAGCAT--TTCATGGAAA----CCAGCCGCCAGCTAGAGTTAAACA 241
|||||| || ||.||||||| ..|| |||.|||||.|.||.|
BPUM_0692___y 198 GCTTCA--ATCGTTTATGGAAATAGGGAAG----CAGTTAGAGCTGAATA 241
BSNT_01259___ 242 AAGAGGGGTATTTGTTGTCACTGGATCCTAAGGAACGGAAAGAAAAACTG 291
||||.||.||.|||.||||.||.|||||.||||||||...||||||.|||
BPUM_0692___y 242 AAGAAGGCTACTTGCTGTCGCTTGATCCGAAGGAACGATTAGAAAAGCTG 291
BSNT_01259___ 292 GAGGAAATTCAGGAAACCCTGAATCAC-CAGCTGAGTTTG--------AT 332
...||.|||.||| | |||||||.|.|| ||
BPUM_0692___y 292 TTAGATATTGAGG-------------CGCAGCTGACTGTGCAACATCAAT 328
BSNT_01259___ 333 TGATGAGAAAATCCGC-----AC-ATTCCAAAGCTTTAAAGAACG--CCT 374
|.||.|.|||| ..|| || ||| |||..||||||| ||.| |.|
BPUM_0692___y 329 TAATTACAAAA-AAGCTTGAAACGATT-CAATCCTTTAAA-AAGGATCTT 375
BSNT_01259___ 375 GCAAGGCATGAAAGGTAAAGCGGAACGCGCCATT---CAA--TCAATCGA 419
|.||.| |||||||.||.|||||..|..||.||| ||| .||| .|
BPUM_0692___y 376 GAAACG-ATGAAAGATAGAGCGGCTCATGCGATTGAGCAACTACAA--AA 422
BSNT_01259___ 420 ATGA 423
||.|
BPUM_0692___y 423 ATAA 426
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