Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01251 and BPUM_0689
See
Amino acid alignment /
Visit
BSNT_01251 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01251___yfnA.1.24716.seq
# -bsequence dna-align/BPUM_0689___yfnA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01251___yfnA-BPUM_0689___yfnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01251___yfnA-BPUM_0689___yfnA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01251___yfnA
# 2: BPUM_0689___yfnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1466
# Identity: 961/1466 (65.6%)
# Similarity: 961/1466 (65.6%)
# Gaps: 154/1466 (10.5%)
# Score: 2982.5
#
#
#=======================================
BSNT_01251___ 1 ATGAGTTCATTATTTAGAAAAAA--------ACC-------GCTTGAAAC 35
||||||||.||||||.||||||| ||| ||||||
BPUM_0689___y 1 ATGAGTTCTTTATTTCGAAAAAAGTCTCTCGACCAGCTCATGCTTGA--- 47
BSNT_01251___ 36 ATTGAGTGCGCAGAGCAAGTCAAA--AAGC--CTTGCCCGTACGTTAAGC 81
|||||||| |||| ||...|||..||||||..
BPUM_0689___y 48 ----------------AAGTCAAACGAAGCGGCTCAGCCGATCGTTAAAT 81
BSNT_01251___ 82 GCATTTGATTTAACCTTGCTCGGTATCGGTTGTGTCATCGGTACAGGGAT 131
.|.||||||||||.||||||.||.||.||.||.||..||||.||.||.||
BPUM_0689___y 82 ACGTTTGATTTAATCTTGCTTGGCATTGGCTGCGTGGTCGGGACTGGTAT 131
BSNT_01251___ 132 TTTTGTCATTACAGGAACAGTGGCAGCG---ACCGGTGCAGGTCCCGCCC 178
.|||||.|||||.|| .||.||.||| |..|.|||.||.||.||..
BPUM_0689___y 132 CTTTGTGATTACGGG---GGTTGCTGCGGCAAAGGATGCGGGACCTGCGA 178
BSNT_01251___ 179 TCATCATATCGTTTATTTTAGCGGGGCTCGCCTGTGCGCTGGCTGCTTTC 228
|.||.|||||.|||||||||||.|.|.||||.||.||.||.||||||||.
BPUM_0689___y 179 TTATTATATCTTTTATTTTAGCTGCGATCGCATGCGCCCTTGCTGCTTTT 228
BSNT_01251___ 229 TGTTATGCTGAGTTTTCGTCTTCCATTCCGATTTCGGGAAGCGTGTACTC 278
||.||.||||||||.||.||.||||||||..|.||.|||||.||.||..|
BPUM_0689___y 229 TGCTACGCTGAGTTCTCCTCGTCCATTCCTGTATCAGGAAGTGTCTATAC 278
BSNT_01251___ 279 CTACTCATACGTGACACTTGGAGAGCTGCTCGCCTTTTTGATCGGATGGG 328
.||.||.||||..||||||||.||..|.||||||||.||.||.||.||||
BPUM_0689___y 279 GTATTCCTACGCTACACTTGGGGAATTTCTCGCCTTCTTAATGGGCTGGG 328
BSNT_01251___ 329 ATCTCATGCTTGAATATGTCATTGCACTGTCGGCGGTTGCCACCGGCTGG 378
||||||||||||||||||||||||||||.||.||.||.||.|.|||.|||
BPUM_0689___y 329 ATCTCATGCTTGAATATGTCATTGCACTCTCTGCTGTAGCAAGCGGATGG 378
BSNT_01251___ 379 TCTTCATACTTTCAATCACTGCTTGCCGGCTTCAATCTTCATATTCCG-- 426
||.||.||.||.|||||||||||....||.||...|.|.||.||.|||
BPUM_0689___y 379 TCGTCCTATTTCCAATCACTGCTCAGTGGATTTGGTGTGCACATACCGAA 428
BSNT_01251___ 427 ----------GCTGCACTGACAGGAGCGCCGGGAAGCACGGCGGGCGCCG 466
||||||| |.||||| |.|.|..||.||||
BPUM_0689___y 429 GGCTTTATCAGCTGCAC---CTGGAGC---------CGCTGATGGAGCCG 466
BSNT_01251___ 467 TATTTAACCTTCC-GGCTGCGGTGATCATTCTCCTCATCACTGCGATTGT 515
|.||||||||||| ||| ||..|.||.|||.|.||.|||||....||.||
BPUM_0689___y 467 TCTTTAACCTTCCAGGC-GCACTCATTATTTTGCTTATCACCTTTATCGT 515
BSNT_01251___ 516 CAGCAGAGGCGTCAAGGAAAGCAC-ACGCTTTAACAACGTCATCGTACTG 564
|...||||||||.||.|||||||| |.|| |.||.|||.||||.||.||.
BPUM_0689___y 516 CTCTAGAGGCGTGAAAGAAAGCACGAAGC-TGAATAACATCATTGTGCTA 564
BSNT_01251___ 565 ATGAAAATCGCGATCATATTATTGTTCATTATTGTC-GGCATCGGCTATG 613
||.|||||.||.|||.|..|..|.||.||.||| || |||.|.|..||.|
BPUM_0689___y 565 ATTAAAATTGCCATCGTCCTTCTCTTTATCATT-TCAGGCTTTGCGTACG 613
BSNT_01251___ 614 TGAAACCGGATAACTGGTCTCCTTTTATGCCTTTCGGGATGAAAGGCGTC 663
|.|||||.||.||||||.|.|||||||||||..|.||..|..|.||.||.
BPUM_0689___y 614 TCAAACCTGAAAACTGGACACCTTTTATGCCGATGGGCTTCCACGGTGTG 663
BSNT_01251___ 664 ATACTTAGCGCCGCCACTGTATTCTTCGCGTACCTTGGGTTTGACGCGGT 713
||...|.|.||.||.|||||.||.||.||.|||||.||.|||||.|||.|
BPUM_0689___y 664 ATTGCTGGAGCGGCAACTGTCTTTTTTGCTTACCTCGGATTTGATGCGAT 713
BSNT_01251___ 714 TTCTAACGCGTCAGAGGAAGTGAAAAATCCGCAAAAAAACATGCCCGTCG 763
..||||.|||||.||.|||||.||||||||.|||||....|||||..|||
BPUM_0689___y 714 CGCTAATGCGTCTGAAGAAGTCAAAAATCCTCAAAAGGCGATGCCAATCG 763
BSNT_01251___ 764 GCATTATTTCAGCTCTAGCCGTCTGCACGGTTCTGTACATCGCGGTATCG 813
|.||.||...|||.||.|..||.||.|||.||.|.|||||||..||.||.
BPUM_0689___y 764 GAATCATCGGAGCGCTCGGTGTTTGTACGATTTTATACATCGGTGTTTCA 813
BSNT_01251___ 814 CTTGTGCTGACAGGCATGATGCCTTATGCCAAATTGAATGTCGGAGATCC 863
.||||..|.|||||||||.|.|..|||.|.||..||||||||.|.||.||
BPUM_0689___y 814 TTTGTCTTAACAGGCATGGTTCACTATACGAAGCTGAATGTCAGTGACCC 863
BSNT_01251___ 864 TGTATCCTTTGCTCTGAAATTCGTCGGACAGGACGCTGTTGCCGGAATTA 913
|||..|.||||||||..||.|.||.||.|.|.|...|||.||.||.||||
BPUM_0689___y 864 TGTCGCATTTGCTCTTCAAGTTGTTGGCCTGAATAGTGTGGCGGGCATTA 913
BSNT_01251___ 914 TTTCTGTCGGTGCGATTATCGGGATTACGACGGTGATGCTCGCTTTGCTG 963
|.||.|.||||||.|||||.|||||.||.|||||..|..|.||.||..|.
BPUM_0689___y 914 TATCCGCCGGTGCCATTATTGGGATCACCACGGTTTTAATTGCCTTAGTC 963
BSNT_01251___ 964 TACGCTCAGGTTCGTTTGACATTTGCCATGAGCAGAGACGGCCTTCTGCC 1013
||.||.|||||.||..|.||.|||||.||||||.|.||.||.|||.||||
BPUM_0689___y 964 TATGCGCAGGTGCGCCTAACCTTTGCGATGAGCCGCGATGGTCTTATGCC 1013
BSNT_01251___ 1014 TG--GATTGTTCGCAAAGGTTCATCCGTCATTTAAAAC-CCCGTTCCGCA 1060
| |||| |||.|.||.||..||||...||...|||| ||||||.| ||
BPUM_0689___y 1014 -GAAGATT-TTCTCTAATGTCAATCCAAAATCACAAACACCCGTTGC-CA 1060
BSNT_01251___ 1061 ACACATGGCTGACAGG-GATCGTTGCAGCGGGAATCGCCGGCTTTATTAA 1109
|.||.||||||||||| |.| ||.|||||..|.||||..||||||.|.||
BPUM_0689___y 1061 ATACTTGGCTGACAGGTGCT-GTCGCAGCATGTATCGTAGGCTTTGTGAA 1109
BSNT_01251___ 1110 C--CTCGGAACGCTGGCCCATCTGGTGAACATGGGAACACTTGCCGCGTT 1157
| .||| ||.||.||..||.|.||||.|||.||.||.|||||.||.||
BPUM_0689___y 1110 CTTATCG--ACACTCGCGAATTTAGTGAGCATCGGTACGCTTGCAGCCTT 1157
BSNT_01251___ 1158 TACGGTCATATCTATTGCTGTCATTGTGCTAAGAAAGAAACATCCTGAA- 1206
.||.|||||.||.||.||.||.||.||..||.|.||.||||| ||.|||
BPUM_0689___y 1158 CACAGTCATTTCAATCGCCGTTATCGTTTTACGGAAAAAACA-CCCGAAT 1206
BSNT_01251___ 1207 ATCAAGGCGTCCTTCAGAGTGCCGTTCGTTCCGGTTGTGCCGATTATCAG 1256
.||||.||..|.||.|.||||||.|||||.||.|||.|.|||||||||||
BPUM_0689___y 1207 GTCAAAGCAGCGTTTAAAGTGCCATTCGTGCCTGTTCTTCCGATTATCAG 1256
BSNT_01251___ 1257 CGCAGGCATCTG------------------CCTTT-----GGTTCATGTA 1283
.||.|.|||.|| ||||| |...||||.|
BPUM_0689___y 1257 TGCGGTCATTTGTATCACACTCGCAACTACCCTTTCATGGGAGACATGGA 1306
BSNT_01251___ 1284 CAGCCTTCCCGGCGTCACATGGCTTTCATTTGTCATCTGG------ATCG 1327
.|||||||| |.|||||| ||.|
BPUM_0689___y 1307 GAGCCTTCC-----------------------TGATCTGGGTGGCCATTG 1333
BSNT_01251___ 1328 CTGTCGGAACGCTGGTTTACTT--CCTAT---ATTCGAGAAAACACAGCT 1372
.||||| |.|||||.|| ||||| |..||| ||||..||.||
BPUM_0689___y 1334 GTGTCG------TTGTTTATTTCGCCTATGCAAGACGA-AAAAGTCATCT 1376
BSNT_01251___ 1373 -TATTAAACAAATAA- 1386
.||.||||..||.|
BPUM_0689___y 1377 GAATGAAACGCATTAG 1392
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.