Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01243 and BPUM_0676

See Amino acid alignment / Visit BSNT_01243 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_01243___yfnH.1.24716.seq
#    -bsequence dna-align/BPUM_0676___yfnH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01243___yfnH-BPUM_0676___yfnH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01243___yfnH-BPUM_0676___yfnH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01243___yfnH
# 2: BPUM_0676___yfnH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 816
# Identity:     569/816 (69.7%)
# Similarity:   569/816 (69.7%)
# Gaps:         102/816 (12.5%)
# Score: 1919.5
# 
#
#=======================================

BSNT_01243___      1 ATGAAAGCGGTCATTCTCTGCGGCGGAAAAGGAACGAGAATGAGTGAAGT     50
                     ||||||||.||||||||||||||.|||||.|||||||||||||||||.||
BPUM_0676___y      1 ATGAAAGCAGTCATTCTCTGCGGAGGAAAGGGAACGAGAATGAGTGAGGT     50

BSNT_01243___     51 CACGAATGACA-----TTCCTAAACCGCTCGCCATGATAGG----CGGCA     91
                     |||     |||     ||||||||||.||.||.|||||.||    |||  
BPUM_0676___y     51 CAC-----ACAAGCGCTTCCTAAACCACTTGCTATGATCGGAGATCGG--     93

BSNT_01243___     92 AACCGATTCTATGGCATATTATGAAAATTTATCAGTACTACGGAGTAAAC    141
                       ||.|||||||||||||||||||||||.||||||||.|||||||||.|.
BPUM_0676___y     94 --CCTATTCTATGGCATATTATGAAAATCTATCAGTATTACGGAGTAGAT    141

BSNT_01243___    142 GAGTTTATTCTGCTT-TTG---GGCTATAAAGGAGAAAAAATCAAGGAAT    187
                     ||||||||    ||| |||   ||.|||||||||||.||.||.||.||.|
BPUM_0676___y    142 GAGTTTAT----CTTATTGCTTGGATATAAAGGAGAGAAGATTAAAGAGT    187

BSNT_01243___    188 ACTTTCTCGACTATGAATGGAAGCACAACAGCCTGACACT--------CG    229
                     |.||.||..||||.||.|||..|||..|.|||.|||..||        ||
BPUM_0676___y    188 ATTTCCTGAACTACGACTGGCGGCATCATAGCATGAAGCTGGATATGGCG    237

BSNT_01243___    230 ACAGCTCTACGGGAGAGGTACAGA-TGCTGGGGCAGCCTGA-AACGTGGA    277
                     ||||      ||||.|.|   |.| |..|.||..||.|.|| ||| ||||
BPUM_0676___y    238 ACAG------GGGAAATG---AAACTTTTAGGAAAGTCAGAGAAC-TGGA    277

BSNT_01243___    278 AAATTACGTTTTTGGAGACTGGGGAAGATACGCTGACAGCCGGAAG----    323
                     ||||.||.|||||.||.||.||.||..|||||.||||||.||||.|    
BPUM_0676___y    278 AAATCACCTTTTTAGATACGGGCGAGAATACGATGACAGGCGGACGGTTA    327

BSNT_01243___    324 AATCTTGCAGGCGAAAGACTATATCGGTGATGAAACATTTCTGCTTACCT    373
                     ||    ||||||..|.||.||.||.||.|||||.|||||..||.|.||.|
BPUM_0676___y    328 AA----GCAGGCACAGGATTACATTGGGGATGAGACATTCATGATGACGT    373

BSNT_01243___    374 ATGGGGACGGGCTGGCCAATATCAATCTTTTCCATC----------TCAT    413
                     ||||.||.||.||.||||||||||||.|.||.||||          ||||
BPUM_0676___y    374 ATGGTGATGGACTTGCCAATATCAATATGTTTCATCTGCTGAAGCGTCAT    423

BSNT_01243___    414 CAGCTATCATCAGACAAAAGGTGCTGCCGCGACTGTCACCGGCATTGACA    463
                     ||| .|||.|         ||.||.||.|||||||||||.||.|||||.|
BPUM_0676___y    424 CAG-GATCTT---------GGGGCAGCTGCGACTGTCACAGGAATTGAAA    463

BSNT_01243___    464 --AAGTCTCGCAGTTTGGCACCTTGACGGTTGAGGACGGCATGGCGAAAA    511
                       |||  ||.||||..||.||.||||.|||..|..||||.|||||..||.
BPUM_0676___y    464 AGAAG--TCACAGTACGGGACGTTGAAGGTATATAACGGGATGGCACAAT    511

BSNT_01243___    512 CATTTTCTGAGAAGACATCAAGTGACGGAATCATCAACGGCGGATTCTT-    560
                     |.||.||||||||||||...|||..|||.||.|||||.||.|||||.|| 
BPUM_0676___y    512 CCTTCTCTGAGAAGACAGACAGTATCGGGATGATCAATGGAGGATTTTTT    561

BSNT_01243___    561 -CGTTCTCAGTCCAAAGGTTTTCGATTATTTGCCGAAGGACG--GA--AA    605
                      .|||.||  |||||||||.||.||||||||   ||..||||  ||  ||
BPUM_0676___y    562 GTGTTGTC--TCCAAAGGTATTTGATTATTT---GACAGACGATGATCAA    606

BSNT_01243___    606 CACGATGTTCGAAGATGAACCGCTGAAGAACCTTGCCAAAGACGGGGAGC    655
                     ..|| ||||.|||||.|||||.||..|.|||||.||.||.||.|||||||
BPUM_0676___y    607 TGCG-TGTTTGAAGAAGAACCTCTTCAAAACCTGGCGAATGATGGGGAGC    655

BSNT_01243___    656 TTGCTGTGTACCGCCATTACGGATTTTGGACGGCCATTGATACGTATAAA    705
                     ||||.||.||....|||.|||||||||||||.||.||.|||||||||||.
BPUM_0676___y    656 TTGCGGTTTATGAGCATCACGGATTTTGGACAGCGATCGATACGTATAAG    705

BSNT_01243___    706 AATCTCTTAGAAG----TCAACAAAATGTGGAATCAA--GGACAACAAGT    749
                     ||   ||| ||||    ||||....|||||||  |||  |||.|||||..
BPUM_0676___y    706 AA---CTT-GAAGGAAATCAATGGCATGTGGA--CAAATGGAAAACAACC    749

BSNT_01243___    750 ATGGAAGGTATGGTGA    765
                     |||||||||.||||||
BPUM_0676___y    750 ATGGAAGGTTTGGTGA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01243 and BPUM_0676

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
