Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01235 and BPUM_0674

See Amino acid alignment / Visit BSNT_01235 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_01235___yetN.1.24716.seq
#    -bsequence dna-align/BPUM_0674___yetN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01235___yetN-BPUM_0674___yetN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01235___yetN-BPUM_0674___yetN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01235___yetN
# 2: BPUM_0674___yetN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1111
# Identity:     777/1111 (69.9%)
# Similarity:   777/1111 (69.9%)
# Gaps:          68/1111 ( 6.1%)
# Score: 2612.5
# 
#
#=======================================

BSNT_01235___      1 ATGGATTTTGAAATTCGGTTTTTATCCTTTTATGTCATACAGGTGGAAGG     50
                     |||||||||...||.||.|||.||||.||.|.||||.||.|..|.|||||
BPUM_0674___y      1 ATGGATTTTACGATACGTTTTCTATCATTCTTTGTCGTAGAAATCGAAGG     50

BSNT_01235___     51 CAAAGATGAGCAGGCGAACAAGCAGTTCAAGCACTTCCAGACCCTTGAT-     99
                     |||||||||.||.||.||.||.|.|||||||||.|..||.||..|.||| 
BPUM_0674___y     51 CAAAGATGAACAAGCAAATAAACGGTTCAAGCATTATCAAACATTAGATC    100

BSNT_01235___    100 ACGGGCGAATTTGAAGAAAGCGAGCTGAAGGACTTTCTCGACGGGGAACT    149
                     |.|.| |||||||||.||||.||.||||||||||||.|.||.||.||.||
BPUM_0674___y    101 AAGAG-GAATTTGAACAAAGTGAACTGAAGGACTTTTTAGATGGTGAGCT    149

BSNT_01235___    150 GAAAAAAATCGTCAAACGGAAAGCCGACCGCCATCCGCAGTCCGAGCAGG    199
                     .|||||||||||||||||.||||..|||.|.||.||..|.||.||.||.|
BPUM_0674___y    150 AAAAAAAATCGTCAAACGAAAAGTGGACAGACACCCTAAATCAGAACAAG    199

BSNT_01235___    200 TCCCGACGAAAATCGGCCATTTTATCGTCGAGCCCGGCCACGAGCTCGAT    249
                     |.||.||.|||||.||||..||.||.||||||||.||.||.||.||||||
BPUM_0674___y    200 TACCAACCAAAATTGGCCGGTTCATTGTCGAGCCTGGTCATGAACTCGAT    249

BSNT_01235___    250 TCCAACCCAAACTACAA--CATGTTCAACCGCGCGCGTCTGGCGGAAACA    297
                     ||.||.|||||||||||  .|| ||||.|.| .||.|..|.||.||.|||
BPUM_0674___y    250 TCAAATCCAAACTACAATTTAT-TTCATCAG-ACGAGATTTGCCGATACA    297

BSNT_01235___    298 AAAGAAGACTTCAATGA--GCTGAGTGAGCAGTTCGTCCGCACGTACCTC    345
                     |||||||..||.|||||  ||  |||||.|||||.||.||||||||..|.
BPUM_0674___y    298 AAAGAAGTATTTAATGAATGC--AGTGAACAGTTTGTTCGCACGTATTTA    345

BSNT_01235___    346 GACACAAGCGCGGTTCGCGGCGGCGTGTTTCTCGTCGCTTCGGCCGTGCC    395
                     ||.|||||.||.||..|.||||||||.|||.|.||.||.||.|||||.||
BPUM_0674___y    346 GATACAAGTGCTGTCAGAGGCGGCGTTTTTTTAGTTGCGTCCGCCGTTCC    395

BSNT_01235___    396 GAGAAAATACTTTGACGAGTCATTTGTCTTCATTATGAAATGTGATTTTG    445
                     .|.|||.|||||.||.||.||.|||||.||.|||||||||||||||||||
BPUM_0674___y    396 TAAAAAGTACTTCGATGACTCCTTTGTTTTTATTATGAAATGTGATTTTG    445

BSNT_01235___    446 AGCCGAAGGTCGCCCGCATCTCTGACGCGTCTTCTCTCATTAAAAAAGTC    495
                     |.|.|||.|||||....|||.||||..|.|||.|..|.||.||||||||.
BPUM_0674___y    446 AACAGAAAGTCGCTTCTATCGCTGATACATCTACCTTGATCAAAAAAGTA    495

BSNT_01235___    496 GAAATGGCGATCACGACAAAAAACATGAAAAGCATCCAATACCCGTACAT    545
                     |||||||||||.||.|||||||||||||||...||.|||||.||.|..||
BPUM_0674___y    496 GAAATGGCGATTACAACAAAAAACATGAAATCAATTCAATATCCATTTAT    545

BSNT_01235___    546 GCCAGAGGAAGGAATGGTCGAGGAAGGTGAGCTGAAAATCCACCAGGCTT    595
                     ||||||.||.||.|||...|||||||.|||..|||||||.|||||..|.|
BPUM_0674___y    546 GCCAGAAGAGGGCATGACGGAGGAAGCTGAAGTGAAAATTCACCAATCCT    595

BSNT_01235___    596 CGCACGCCCGCTATTTTGAGGACTTTCTGAAATTCGTCGAGTACGGAGAA    645
                     |.||.||.||.|||||||||||||||||||||||||||||.|||||.|||
BPUM_0674___y    596 CACATGCTCGTTATTTTGAGGACTTTCTGAAATTCGTCGAATACGGGGAA    645

BSNT_01235___    646 TCGATGCCGGAAATCATGAAAAATCAGGTCATGAACATGGTACAGGAGCA    695
                     ||.|||||.|||||||||||....|||||||||||.|||||.|||||.||
BPUM_0674___y    646 TCTATGCCCGAAATCATGAAGTCACAGGTCATGAATATGGTGCAGGAACA    695

BSNT_01235___    696 CGTCTACGAGACATTTGAAGACAACAGCGAAGAGCTCAAGCAGTTCGAGC    745
                     .||.|..||.|||||..|.||..|.||.|||||..|.|||||||||||..
BPUM_0674___y    696 AGTATTTGAAACATTACAGGATGAAAGTGAAGAATTAAAGCAGTTCGAAG    745

BSNT_01235___    746 ACGACATTGAGATTTGGGAAGCAAGCGAAAAACGGGAAATCCAAGAGCGC    795
                     |.||..||||.||.|||||||||||.|||||.||.|||||...|||....
BPUM_0674___y    746 AGGATCTTGAAATATGGGAAGCAAGTGAAAAGCGAGAAATTAGAGAAACA    795

BSNT_01235___    796 CTCGACACCCATCAAGTCA---TCGAAGCCTCCGCCCAAATCATCGAGCA    842
                     ||.||.||..|.||.||||   |.|.|||.|   |.||.||..|.||.||
BPUM_0674___y    796 CTAGATACAGAACAGGTCACACTAGCAGCTT---CTCACATTGTGGAACA    842

BSNT_01235___    843 CACGCCAGAGGCCCAGCTGAAAATGAAA----GTC--GGAGAAACAGAGA    886
                     .||.||.|      |..|.|.|||||||    |||  ||.||||||||.|
BPUM_0674___y    843 AACCCCTG------ATATCACAATGAAAATGCGTCTAGGTGAAACAGAAA    886

BSNT_01235___    887 TTAAGGGATTGCTAGCGGATTTTGGCGATTCTATTCATCTCGCAAAAGTA    936
                     |.||.|||.|..||||.||.||.|||.|.||.||.|||.|.||.||.||.
BPUM_0674___y    887 TCAAAGGACTTTTAGCCGACTTCGGCCACTCGATCCATATTGCGAAGGTC    936

BSNT_01235___    937 AACGGGCGCTATGTCGCGCTGATTGAAGCCGAGACGATTTCG--TTTGAG    984
                     |||...||.|||||||.|||..|||||||  ||||.|..|||  |||||.
BPUM_0674___y    937 AACAATCGATATGTCGTGCTCGTTGAAGC--AGACCAAATCGTCTTTGAA    984

BSNT_01235___    985 AAAGGCAGTTCGCCGGTGGAGTTTTATAAGCCTGAGGGGCTGCATGAGGT   1034
                     |||||.||..|.||.||.||.||..||||.||..|.||..|..|.|||| 
BPUM_0674___y    985 AAAGGAAGCACACCTGTTGAATTCCATAAACCAAATGGATTAAAAGAGG-   1033

BSNT_01235___   1035 GATTG------AGCGGATAAAAGGGAAAAATATAAATG---ACGATTAA-   1074
                       |||      |||.|     |.|.|||||       |   ||||||.| 
BPUM_0674___y   1034 --TTGTCAGCCAGCTG-----ACGCAAAAA-------GCCTACGATTCAG   1069

BSNT_01235___   1074 -----------   1074
                                
BPUM_0674___y   1070 ACTTAGAATAA   1080


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