Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01235 and BPUM_0674
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_01235___yetN.1.24716.seq
# -bsequence dna-align/BPUM_0674___yetN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01235___yetN-BPUM_0674___yetN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01235___yetN-BPUM_0674___yetN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01235___yetN
# 2: BPUM_0674___yetN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1111
# Identity: 777/1111 (69.9%)
# Similarity: 777/1111 (69.9%)
# Gaps: 68/1111 ( 6.1%)
# Score: 2612.5
#
#
#=======================================
BSNT_01235___ 1 ATGGATTTTGAAATTCGGTTTTTATCCTTTTATGTCATACAGGTGGAAGG 50
|||||||||...||.||.|||.||||.||.|.||||.||.|..|.|||||
BPUM_0674___y 1 ATGGATTTTACGATACGTTTTCTATCATTCTTTGTCGTAGAAATCGAAGG 50
BSNT_01235___ 51 CAAAGATGAGCAGGCGAACAAGCAGTTCAAGCACTTCCAGACCCTTGAT- 99
|||||||||.||.||.||.||.|.|||||||||.|..||.||..|.|||
BPUM_0674___y 51 CAAAGATGAACAAGCAAATAAACGGTTCAAGCATTATCAAACATTAGATC 100
BSNT_01235___ 100 ACGGGCGAATTTGAAGAAAGCGAGCTGAAGGACTTTCTCGACGGGGAACT 149
|.|.| |||||||||.||||.||.||||||||||||.|.||.||.||.||
BPUM_0674___y 101 AAGAG-GAATTTGAACAAAGTGAACTGAAGGACTTTTTAGATGGTGAGCT 149
BSNT_01235___ 150 GAAAAAAATCGTCAAACGGAAAGCCGACCGCCATCCGCAGTCCGAGCAGG 199
.|||||||||||||||||.||||..|||.|.||.||..|.||.||.||.|
BPUM_0674___y 150 AAAAAAAATCGTCAAACGAAAAGTGGACAGACACCCTAAATCAGAACAAG 199
BSNT_01235___ 200 TCCCGACGAAAATCGGCCATTTTATCGTCGAGCCCGGCCACGAGCTCGAT 249
|.||.||.|||||.||||..||.||.||||||||.||.||.||.||||||
BPUM_0674___y 200 TACCAACCAAAATTGGCCGGTTCATTGTCGAGCCTGGTCATGAACTCGAT 249
BSNT_01235___ 250 TCCAACCCAAACTACAA--CATGTTCAACCGCGCGCGTCTGGCGGAAACA 297
||.||.||||||||||| .|| ||||.|.| .||.|..|.||.||.|||
BPUM_0674___y 250 TCAAATCCAAACTACAATTTAT-TTCATCAG-ACGAGATTTGCCGATACA 297
BSNT_01235___ 298 AAAGAAGACTTCAATGA--GCTGAGTGAGCAGTTCGTCCGCACGTACCTC 345
|||||||..||.||||| || |||||.|||||.||.||||||||..|.
BPUM_0674___y 298 AAAGAAGTATTTAATGAATGC--AGTGAACAGTTTGTTCGCACGTATTTA 345
BSNT_01235___ 346 GACACAAGCGCGGTTCGCGGCGGCGTGTTTCTCGTCGCTTCGGCCGTGCC 395
||.|||||.||.||..|.||||||||.|||.|.||.||.||.|||||.||
BPUM_0674___y 346 GATACAAGTGCTGTCAGAGGCGGCGTTTTTTTAGTTGCGTCCGCCGTTCC 395
BSNT_01235___ 396 GAGAAAATACTTTGACGAGTCATTTGTCTTCATTATGAAATGTGATTTTG 445
.|.|||.|||||.||.||.||.|||||.||.|||||||||||||||||||
BPUM_0674___y 396 TAAAAAGTACTTCGATGACTCCTTTGTTTTTATTATGAAATGTGATTTTG 445
BSNT_01235___ 446 AGCCGAAGGTCGCCCGCATCTCTGACGCGTCTTCTCTCATTAAAAAAGTC 495
|.|.|||.|||||....|||.||||..|.|||.|..|.||.||||||||.
BPUM_0674___y 446 AACAGAAAGTCGCTTCTATCGCTGATACATCTACCTTGATCAAAAAAGTA 495
BSNT_01235___ 496 GAAATGGCGATCACGACAAAAAACATGAAAAGCATCCAATACCCGTACAT 545
|||||||||||.||.|||||||||||||||...||.|||||.||.|..||
BPUM_0674___y 496 GAAATGGCGATTACAACAAAAAACATGAAATCAATTCAATATCCATTTAT 545
BSNT_01235___ 546 GCCAGAGGAAGGAATGGTCGAGGAAGGTGAGCTGAAAATCCACCAGGCTT 595
||||||.||.||.|||...|||||||.|||..|||||||.|||||..|.|
BPUM_0674___y 546 GCCAGAAGAGGGCATGACGGAGGAAGCTGAAGTGAAAATTCACCAATCCT 595
BSNT_01235___ 596 CGCACGCCCGCTATTTTGAGGACTTTCTGAAATTCGTCGAGTACGGAGAA 645
|.||.||.||.|||||||||||||||||||||||||||||.|||||.|||
BPUM_0674___y 596 CACATGCTCGTTATTTTGAGGACTTTCTGAAATTCGTCGAATACGGGGAA 645
BSNT_01235___ 646 TCGATGCCGGAAATCATGAAAAATCAGGTCATGAACATGGTACAGGAGCA 695
||.|||||.|||||||||||....|||||||||||.|||||.|||||.||
BPUM_0674___y 646 TCTATGCCCGAAATCATGAAGTCACAGGTCATGAATATGGTGCAGGAACA 695
BSNT_01235___ 696 CGTCTACGAGACATTTGAAGACAACAGCGAAGAGCTCAAGCAGTTCGAGC 745
.||.|..||.|||||..|.||..|.||.|||||..|.|||||||||||..
BPUM_0674___y 696 AGTATTTGAAACATTACAGGATGAAAGTGAAGAATTAAAGCAGTTCGAAG 745
BSNT_01235___ 746 ACGACATTGAGATTTGGGAAGCAAGCGAAAAACGGGAAATCCAAGAGCGC 795
|.||..||||.||.|||||||||||.|||||.||.|||||...|||....
BPUM_0674___y 746 AGGATCTTGAAATATGGGAAGCAAGTGAAAAGCGAGAAATTAGAGAAACA 795
BSNT_01235___ 796 CTCGACACCCATCAAGTCA---TCGAAGCCTCCGCCCAAATCATCGAGCA 842
||.||.||..|.||.|||| |.|.|||.| |.||.||..|.||.||
BPUM_0674___y 796 CTAGATACAGAACAGGTCACACTAGCAGCTT---CTCACATTGTGGAACA 842
BSNT_01235___ 843 CACGCCAGAGGCCCAGCTGAAAATGAAA----GTC--GGAGAAACAGAGA 886
.||.||.| |..|.|.||||||| ||| ||.||||||||.|
BPUM_0674___y 843 AACCCCTG------ATATCACAATGAAAATGCGTCTAGGTGAAACAGAAA 886
BSNT_01235___ 887 TTAAGGGATTGCTAGCGGATTTTGGCGATTCTATTCATCTCGCAAAAGTA 936
|.||.|||.|..||||.||.||.|||.|.||.||.|||.|.||.||.||.
BPUM_0674___y 887 TCAAAGGACTTTTAGCCGACTTCGGCCACTCGATCCATATTGCGAAGGTC 936
BSNT_01235___ 937 AACGGGCGCTATGTCGCGCTGATTGAAGCCGAGACGATTTCG--TTTGAG 984
|||...||.|||||||.|||..||||||| ||||.|..||| |||||.
BPUM_0674___y 937 AACAATCGATATGTCGTGCTCGTTGAAGC--AGACCAAATCGTCTTTGAA 984
BSNT_01235___ 985 AAAGGCAGTTCGCCGGTGGAGTTTTATAAGCCTGAGGGGCTGCATGAGGT 1034
|||||.||..|.||.||.||.||..||||.||..|.||..|..|.||||
BPUM_0674___y 985 AAAGGAAGCACACCTGTTGAATTCCATAAACCAAATGGATTAAAAGAGG- 1033
BSNT_01235___ 1035 GATTG------AGCGGATAAAAGGGAAAAATATAAATG---ACGATTAA- 1074
||| |||.| |.|.||||| | ||||||.|
BPUM_0674___y 1034 --TTGTCAGCCAGCTG-----ACGCAAAAA-------GCCTACGATTCAG 1069
BSNT_01235___ 1074 ----------- 1074
BPUM_0674___y 1070 ACTTAGAATAA 1080
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