Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02043 and BPUM_0671
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_02043___yjdI.1.24716.seq
# -bsequence dna-align/BPUM_0671.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02043___yjdI-BPUM_0671.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02043___yjdI-BPUM_0671.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02043___yjdI
# 2: BPUM_0671
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 598
# Identity: 279/598 (46.7%)
# Similarity: 279/598 (46.7%)
# Gaps: 236/598 (39.5%)
# Score: 470.0
#
#
#=======================================
BSNT_02043___ 1 ATGGCGAAAAAAATGGCAAAAACAAATGCGGTTCGTC-TGA----TAGAA 45
|| ||||..|.||.|| || || ||| |.|||
BPUM_0671 1 AT---GAAAGTACTGCCA---------GC------TCATGAATACTTGAA 32
BSNT_02043___ 46 -CAGCAGAACATCTCTTATGAGGT------ATTAGGGTATAAAACAG--- 85
|||||.|.||||.|.||||||.| |||....|...||||||
BPUM_0671 33 TCAGCACAGCATCCCATATGAGATCAAAACATTTTCTTCCGAAACAGAGA 82
BSNT_02043___ 86 ACGGCCAGCCG-----GTAG-ATGGCATCTCTGTTGCGGAAAAAATCGGT 129
|.|| ||||| |||| | |||.|.| |.|||
BPUM_0671 83 AGGG--AGCCGCAAATGTAGCA--GCAGCCC--------------TTGGT 114
BSNT_02043___ 130 TATCCTTTGA---AATATGTATAT-AAAACGTTGGTTGCAGCAACA---- 171
|.||.|..|| || ||| || ||.||.|||.||...|.||||
BPUM_0671 115 TTTCGTGAGAGACAA-ATG---ATCAAGACATTGATTTTTGAAACAGGGG 160
BSNT_02043___ 172 ----GGAACAAATCATTATTATGTCTTTGTTGTACCCGTTG--CAGAAGA 215
||||||..|..||.|.||| |||| .||.|| |||.|.|
BPUM_0671 161 AGGGGGAACAGCTGCTTGTGATG-----GTTG---GCGCTGACCAGCATA 202
BSNT_02043___ 216 GTTAGATGTAAAAAAGGCAGCAAAGGTGACAGGGGA---AAAGAAA---- 258
|||.|| |||||.| |||||||
BPUM_0671 203 -TTAAAT----------------------CAGGGAAATTAAAGAAAGCGG 229
BSNT_02043___ 259 --------------ATAGAAATGATTGCAATGA----AGGAGCTATTAGC 290
||..||||| || ||.| ||.||.|..|||.
BPUM_0671 230 CTGGCTCCCGTAATATTAAAATG---GC-ATCACCAGAGAAGGTTCTAGA 275
BSNT_02043___ 291 GGTAACTGGCTATC---TTCGCGGCGGCTGCTCGCCAAT----------- 326
.||.||.|||||.| || |||| ||||
BPUM_0671 276 AGTGACAGGCTACCGAATT------GGCT------CAATACCGCCGTTTT 313
BSNT_02043___ 327 --TGGCATGAAAAAATTGTTCCCGACCTATATTGATGCATCTGCAGAAG- 373
||||| |..|.||...||||..||| || |||| ||||
BPUM_0671 314 GCTGGCA-GCCAGAAGGCTTCCGCACC-------AT-CATC----GAAGC 350
BSNT_02043___ 374 --CGCTTGATTTTAT-------TATT----GTCAGTGCA-------GGGA 403
|||| |||..|| |||| ||..|.||| |||.
BPUM_0671 351 TTCGCT--ATTAGATGAAGACATATTAGGCGTTGGAGCAGGTGAATGGGG 398
BSNT_02043___ 404 AAATCGGTATGCAGCTAAAGTTGGCGCCACAAGATTT------AGCC--- 444
|||| |..||.|.|.|.| |.|||.||.|.|| ||||
BPUM_0671 399 AAAT-GAAATACTGATCA------CACCAGAACAATTAGTAAAAGCCTCA 441
BSNT_02043___ 445 -AG-----ATCATGTGA-----TGCCG-CATTTGCAGAAATTGTATAG 480
|| |.|||.||| |||.| || ||||| ||||
BPUM_0671 442 AAGGCTGTACCATATGACATCGTGCAGCCA---GCAGA------ATAG 480
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