Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02043 and BPUM_0671

See Amino acid alignment / Visit BSNT_02043 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_02043___yjdI.1.24716.seq
#    -bsequence dna-align/BPUM_0671.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02043___yjdI-BPUM_0671.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02043___yjdI-BPUM_0671.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02043___yjdI
# 2: BPUM_0671
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 598
# Identity:     279/598 (46.7%)
# Similarity:   279/598 (46.7%)
# Gaps:         236/598 (39.5%)
# Score: 470.0
# 
#
#=======================================

BSNT_02043___      1 ATGGCGAAAAAAATGGCAAAAACAAATGCGGTTCGTC-TGA----TAGAA     45
                     ||   ||||..|.||.||         ||      || |||    |.|||
BPUM_0671          1 AT---GAAAGTACTGCCA---------GC------TCATGAATACTTGAA     32

BSNT_02043___     46 -CAGCAGAACATCTCTTATGAGGT------ATTAGGGTATAAAACAG---     85
                      |||||.|.||||.|.||||||.|      |||....|...||||||   
BPUM_0671         33 TCAGCACAGCATCCCATATGAGATCAAAACATTTTCTTCCGAAACAGAGA     82

BSNT_02043___     86 ACGGCCAGCCG-----GTAG-ATGGCATCTCTGTTGCGGAAAAAATCGGT    129
                     |.||  |||||     |||| |  |||.|.|              |.|||
BPUM_0671         83 AGGG--AGCCGCAAATGTAGCA--GCAGCCC--------------TTGGT    114

BSNT_02043___    130 TATCCTTTGA---AATATGTATAT-AAAACGTTGGTTGCAGCAACA----    171
                     |.||.|..||   || |||   || ||.||.|||.||...|.||||    
BPUM_0671        115 TTTCGTGAGAGACAA-ATG---ATCAAGACATTGATTTTTGAAACAGGGG    160

BSNT_02043___    172 ----GGAACAAATCATTATTATGTCTTTGTTGTACCCGTTG--CAGAAGA    215
                         ||||||..|..||.|.|||     ||||   .||.||  |||.|.|
BPUM_0671        161 AGGGGGAACAGCTGCTTGTGATG-----GTTG---GCGCTGACCAGCATA    202

BSNT_02043___    216 GTTAGATGTAAAAAAGGCAGCAAAGGTGACAGGGGA---AAAGAAA----    258
                      |||.||                      |||||.|   |||||||    
BPUM_0671        203 -TTAAAT----------------------CAGGGAAATTAAAGAAAGCGG    229

BSNT_02043___    259 --------------ATAGAAATGATTGCAATGA----AGGAGCTATTAGC    290
                                   ||..|||||   || ||.|    ||.||.|..|||.
BPUM_0671        230 CTGGCTCCCGTAATATTAAAATG---GC-ATCACCAGAGAAGGTTCTAGA    275

BSNT_02043___    291 GGTAACTGGCTATC---TTCGCGGCGGCTGCTCGCCAAT-----------    326
                     .||.||.|||||.|   ||      ||||      ||||           
BPUM_0671        276 AGTGACAGGCTACCGAATT------GGCT------CAATACCGCCGTTTT    313

BSNT_02043___    327 --TGGCATGAAAAAATTGTTCCCGACCTATATTGATGCATCTGCAGAAG-    373
                       ||||| |..|.||...||||..|||       || ||||    |||| 
BPUM_0671        314 GCTGGCA-GCCAGAAGGCTTCCGCACC-------AT-CATC----GAAGC    350

BSNT_02043___    374 --CGCTTGATTTTAT-------TATT----GTCAGTGCA-------GGGA    403
                       ||||  |||..||       ||||    ||..|.|||       |||.
BPUM_0671        351 TTCGCT--ATTAGATGAAGACATATTAGGCGTTGGAGCAGGTGAATGGGG    398

BSNT_02043___    404 AAATCGGTATGCAGCTAAAGTTGGCGCCACAAGATTT------AGCC---    444
                     |||| |..||.|.|.|.|      |.|||.||.|.||      ||||   
BPUM_0671        399 AAAT-GAAATACTGATCA------CACCAGAACAATTAGTAAAAGCCTCA    441

BSNT_02043___    445 -AG-----ATCATGTGA-----TGCCG-CATTTGCAGAAATTGTATAG    480
                      ||     |.|||.|||     |||.| ||   |||||      ||||
BPUM_0671        442 AAGGCTGTACCATATGACATCGTGCAGCCA---GCAGA------ATAG    480


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