Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01145 and BPUM_0643
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_01145___opuE.1.24716.seq
# -bsequence dna-align/BPUM_0643___opuE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01145___opuE-BPUM_0643___opuE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01145___opuE-BPUM_0643___opuE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01145___opuE
# 2: BPUM_0643___opuE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1534
# Identity: 1065/1534 (69.4%)
# Similarity: 1065/1534 (69.4%)
# Gaps: 107/1534 ( 7.0%)
# Score: 3462.5
#
#
#=======================================
BSNT_01145___ 1 GTGAGTATTGAAATTATTATATCTTTAGGAATTTACTTTATTGCCATGCT 50
.||||||||||.|||...||.|||.||...|||||.|||||||..|||||
BPUM_0643___o 1 ATGAGTATTGAGATTGGAATTTCTCTATCTATTTATTTTATTGGAATGCT 50
BSNT_01145___ 51 GTTAATCGGCTGGTATGCATTCAAGAAAACCACTGACATCAATGATTACA 100
|...||.||||||||||||||.|..|||||.|.||||.|.||||||||.|
BPUM_0643___o 51 GGCCATTGGCTGGTATGCATTTAGAAAAACAAATGACTTGAATGATTATA 100
BSNT_01145___ 101 TGCTTGGAGGAAGAGGCCTCGGACCATTCGTTACTGCTTTGTCTGCCGGT 150
||.|.||.|||.|.||.||.||.||.|.|||.||.|||.|.|||||.|||
BPUM_0643___o 101 TGTTGGGCGGACGCGGGCTGGGTCCTTACGTGACAGCTCTATCTGCTGGT 150
BSNT_01145___ 151 GCGGCCGATATGAGCGGATGGATGCTGATGGGTGTTCCCGGCGCGATGTT 200
||..|.||||||||.||.||||||||.|||||..||||.||.|||||||.
BPUM_0643___o 151 GCTTCAGATATGAGTGGCTGGATGCTCATGGGACTTCCAGGTGCGATGTA 200
BSNT_01145___ 201 TGCGACAGGGCTGTCCACCTTATGGCTTGCTTTAGGTCTTACAATCGGGG 250
|.|.||||||||.||..|...||||||||||.|.|||.|.|..|..||||
BPUM_0643___o 201 TACAACAGGGCTTTCGTCAGGATGGCTTGCTGTTGGTTTGATTAGTGGGG 250
BSNT_01145___ 251 CGTACTCAAATTACTTGCTGCTGGCTCCAAGGCTGCGTGCTTATACAGAA 300
|.||||..|||||..|..|..|||||||..|..|.||..|.|||||.||.
BPUM_0643___o 251 CTTACTTGAATTATCTATTTTTGGCTCCGCGCTTACGATCGTATACTGAG 300
BSNT_01145___ 301 GCGGCGGATGATGCGATTACAATTCCTGATTTCTTTGATAAACGATTCCA 350
|..||.|||||||||||.||.|||||.||.||.|||||.||||||||..|
BPUM_0643___o 301 GTTGCTGATGATGCGATCACCATTCCAGACTTTTTTGACAAACGATTTAA 350
BSNT_01145___ 351 GCATTCTTCATCAC-TGCTGAAAATC-GTATCTGCATTGATCATCATGAT 398
..||||||| .|| |..|.||||.| ||.||.||..|.||.||.|||||
BPUM_0643___o 351 AGATTCTTC--TACTTTATTAAAAGCTGTCTCAGCTGTTATTATTATGAT 398
BSNT_01145___ 399 CTTTTTCACATTATATACCTCTTCCGGTATGGTATCTGGCGGACGGCTGT 448
.||.||.|||.|.||.|||||.||.|||||||||||||||||.||..|.|
BPUM_0643___o 399 TTTCTTTACACTGTACACCTCATCAGGTATGGTATCTGGCGGTCGTTTAT 448
BSNT_01145___ 449 TTGAATCTGCTTTTGGTGCGGATTACAAATTAGGCCTGTTTCTGACCACC 498
|.||||||||.||||||||..||||.|..||.||..|..||.|.|||.|
BPUM_0643___o 449 TCGAATCTGCGTTTGGTGCCAATTATATGTTTGGTTTAATTTTAACCTC- 497
BSNT_01145___ 499 GCAGTTGTCGTG---TTATACACACTGTTTGGCGGTTTCCTTGCTGTCAG 545
.|| |.||||| ||||||||..|.||.|||||.||..|.||.||.||
BPUM_0643___o 498 -TAG-TATCGTGATCTTATACACTTTATTCGGCGGCTTTTTGGCAGTTAG 545
BSNT_01145___ 546 TCTGACTGACTTCGTGCAGGGTGCGATCATGTTTGCAGCACTAGTGCTTG 595
..|.|||||.||.||.||.||.||.||.||||||..||||.|||||||.|
BPUM_0643___o 546 CTTAACTGATTTTGTTCAAGGAGCTATTATGTTTTTAGCATTAGTGCTCG 595
BSNT_01145___ 596 TGCCGATCGTTGCTTTTACCCATGTGGGCGGC---GTTGCTCC------- 635
|||||||||||||.|||||.||..|.||.||| .||||..|
BPUM_0643___o 596 TGCCGATCGTTGCCTTTACTCAATTAGGTGGCCCAATTGCCACATATCAA 645
BSNT_01145___ 636 GACTTTCCATGAAATCGACGCTGTTAATCCACATTTATTGGATATTTTTA 685
||..|||.|..|| ||.|||||.|.||..|.|||||.||.|
BPUM_0643___o 646 GATATTCAACAAA----------TTGATCCAAAATTGCTTGATATATTCA 685
BSNT_01145___ 686 AAGGCGCGAGCGTCATTAGCATTATTTCCTATTTAGCCTGGGGGTTGGGC 735
.|||..|||||||||||.||||||||||||..|||||.|||||..|.||.
BPUM_0643___o 686 GAGGAACGAGCGTCATTGGCATTATTTCCTTCTTAGCATGGGGCCTTGGT 735
BSNT_01145___ 736 TACTACGGCCAGCCTCATATCATCGTCCGATTTATGGCCATTAAAGAC-A 784
||||..||.|||||.||.||.||.||.|||||.||||||||| |.||| .
BPUM_0643___o 736 TACTTTGGACAGCCGCACATTATTGTTCGATTCATGGCCATT-ACGACTG 784
BSNT_01145___ 785 TTAAAGATTTAAAACCTGCACGCCGAATCGGTATGAGCTGGATGATCATT 834
|.||||||||||||||.|||||.||.||||||||||||||||||||..|.
BPUM_0643___o 785 TAAAAGATTTAAAACCAGCACGTCGTATCGGTATGAGCTGGATGATTGTG 834
BSNT_01145___ 835 ACAGTTCTAGGTTC-----CGTGCTGACGGGTTTAATCGGTGTTGCATAC 879
.|.|||.|.||||| | ||.| ||.|||.|||||||.||.||.
BPUM_0643___o 835 TCTGTTATTGGTTCATTATC-TGTT----GGATTAGTCGGTGTCGCTTAT 879
BSNT_01145___ 880 GCCCAT-AAATTCGGAGT--TGCTGTAAAAGATCCGGAGATGATTTTCAT 926
|..||| |.|.| ||| |.||.||...||.||.||.|..|||||.||
BPUM_0643___o 880 GTACATGAGACT---AGTACTACTTTAGCTGACCCAGAAACCATTTTTAT 926
BSNT_01145___ 927 TATCTTCTCTAAAATTTTGTTCCACCCATTAATTACAGGGTTCTTATTGT 976
|.|.||.|||||..|.||.|||||.||.|..|||||.||.||.|||.|.|
BPUM_0643___o 927 TGTATTTTCTAAGGTGTTATTCCATCCGTATATTACTGGATTTTTACTCT 976
BSNT_01145___ 977 CAGCTATTTTGGCTGCCATCATGAGTTCGATTTCCTCACAGCT-CTTAGT 1025
|.||||||||.|||||.||.||||||||||||||.|||||||| ||| ||
BPUM_0643___o 977 CTGCTATTTTAGCTGCGATTATGAGTTCGATTTCGTCACAGCTGCTT-GT 1025
BSNT_01145___ 1026 CACAGCAAGTGCTGTAACAGAGGATTTATACCGGTCATTTTTCAGACGAA 1075
.||.||||||||..|.||||||||||||||||||.|.||.||.|||.|||
BPUM_0643___o 1026 GACTGCAAGTGCAATGACAGAGGATTTATACCGGACTTTCTTTAGAAGAA 1075
BSNT_01145___ 1076 AAGCTTCTGATAAAGAATTGGTCATGATCGGGCGATTGTCCGTCTTAGTC 1125
||||.||.||.||||||.|.||.|||||.||.||..||||.||.||.|||
BPUM_0643___o 1076 AAGCGTCAGACAAAGAACTAGTGATGATTGGACGTATGTCTGTATTGGTC 1125
BSNT_01145___ 1126 ATTGCCGTTATCGCGGTACTCTTG----TCATTGAATCCGAACAG-CACC 1170
.|||||.||||||||.| ||| |||.|.||||| ||..| .|||
BPUM_0643___o 1126 GTTGCCATTATCGCGCT----TTGTCTTTCACTTAATCC-AAGTGATACC 1170
BSNT_01145___ 1171 ATTCTTGATTTGGTCGGATACGCTTGGGCCGGCTTCGGTTCAGCTTTCGG 1220
|||||||||.|.||.||.||.||||||||.|||||.||.||..|.||.||
BPUM_0643___o 1171 ATTCTTGATCTTGTTGGTTATGCTTGGGCAGGCTTTGGATCTTCATTTGG 1220
BSNT_01145___ 1221 ACCTGCGATTCTGCTCAGTCTGTATTGGAAACGAATGAACGAATGGGGCG 1270
.||.|..||.||.||..|.||.||||||||.|||||||||.|....||.|
BPUM_0643___o 1221 TCCAGTCATCCTTCTATGCCTATATTGGAAGCGAATGAACCATCACGGTG 1270
BSNT_01145___ 1271 CGCTTGCTGCCATGATTGTCGGGGCTGCGACCGTGTTGATC------TGG 1314
|.||.||.|..|||.||||.|||||.| .||||| || |||
BPUM_0643___o 1271 CACTAGCAGGAATGGTTGTTGGGGCAG-----TTGTTG-TCTTAACATGG 1314
BSNT_01145___ 1315 ATTACAACCGGCCTGGCAA-AAT-CAACCGGTGTGTACGAAATCATCCCT 1362
|||.||||||||.|| || ||| ||||.||..||||||||||..|.||.
BPUM_0643___o 1315 ATTTCAACCGGCTTG--AATAATACAACTGGCTTGTACGAAATGGTTCCA 1362
BSNT_01145___ 1363 GGGTTTATTCTCA---GTATGATTGCCGGCATCATTGTCAGCATGATCAC 1409
||.||||||.|.| ||.|||.||| |||||||||||||.|..|.||
BPUM_0643___o 1363 GGATTTATTTTAAGTGGTTTGACTGC---CATCATTGTCAGCCTCTTGAC 1409
BSNT_01145___ 1410 ----AAAACGTC-----CTGC--AAAAGCCTCTTACCGATTATTCGGTGT 1448
|||.|.|| ||.| ||||||...|||||.|
BPUM_0643___o 1410 CAATAAACCATCTAAAGCTTCTAAAAAGCTGTTTACCAA----------- 1448
BSNT_01145___ 1449 CATGGAAAAGC-TGTT-AAAACGCAA-AAAGTAA 1479
.||||||||.| |.|| ||.|.|.|| |||.|||
BPUM_0643___o 1449 AATGGAAAATCATCTTGAAGAAGAAACAAAATAA 1482
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