Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01145 and BPUM_0643

See Amino acid alignment / Visit BSNT_01145 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:46
# Commandline: needle
#    -asequence dna-align/BSNT_01145___opuE.1.24716.seq
#    -bsequence dna-align/BPUM_0643___opuE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01145___opuE-BPUM_0643___opuE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01145___opuE-BPUM_0643___opuE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01145___opuE
# 2: BPUM_0643___opuE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1534
# Identity:    1065/1534 (69.4%)
# Similarity:  1065/1534 (69.4%)
# Gaps:         107/1534 ( 7.0%)
# Score: 3462.5
# 
#
#=======================================

BSNT_01145___      1 GTGAGTATTGAAATTATTATATCTTTAGGAATTTACTTTATTGCCATGCT     50
                     .||||||||||.|||...||.|||.||...|||||.|||||||..|||||
BPUM_0643___o      1 ATGAGTATTGAGATTGGAATTTCTCTATCTATTTATTTTATTGGAATGCT     50

BSNT_01145___     51 GTTAATCGGCTGGTATGCATTCAAGAAAACCACTGACATCAATGATTACA    100
                     |...||.||||||||||||||.|..|||||.|.||||.|.||||||||.|
BPUM_0643___o     51 GGCCATTGGCTGGTATGCATTTAGAAAAACAAATGACTTGAATGATTATA    100

BSNT_01145___    101 TGCTTGGAGGAAGAGGCCTCGGACCATTCGTTACTGCTTTGTCTGCCGGT    150
                     ||.|.||.|||.|.||.||.||.||.|.|||.||.|||.|.|||||.|||
BPUM_0643___o    101 TGTTGGGCGGACGCGGGCTGGGTCCTTACGTGACAGCTCTATCTGCTGGT    150

BSNT_01145___    151 GCGGCCGATATGAGCGGATGGATGCTGATGGGTGTTCCCGGCGCGATGTT    200
                     ||..|.||||||||.||.||||||||.|||||..||||.||.|||||||.
BPUM_0643___o    151 GCTTCAGATATGAGTGGCTGGATGCTCATGGGACTTCCAGGTGCGATGTA    200

BSNT_01145___    201 TGCGACAGGGCTGTCCACCTTATGGCTTGCTTTAGGTCTTACAATCGGGG    250
                     |.|.||||||||.||..|...||||||||||.|.|||.|.|..|..||||
BPUM_0643___o    201 TACAACAGGGCTTTCGTCAGGATGGCTTGCTGTTGGTTTGATTAGTGGGG    250

BSNT_01145___    251 CGTACTCAAATTACTTGCTGCTGGCTCCAAGGCTGCGTGCTTATACAGAA    300
                     |.||||..|||||..|..|..|||||||..|..|.||..|.|||||.||.
BPUM_0643___o    251 CTTACTTGAATTATCTATTTTTGGCTCCGCGCTTACGATCGTATACTGAG    300

BSNT_01145___    301 GCGGCGGATGATGCGATTACAATTCCTGATTTCTTTGATAAACGATTCCA    350
                     |..||.|||||||||||.||.|||||.||.||.|||||.||||||||..|
BPUM_0643___o    301 GTTGCTGATGATGCGATCACCATTCCAGACTTTTTTGACAAACGATTTAA    350

BSNT_01145___    351 GCATTCTTCATCAC-TGCTGAAAATC-GTATCTGCATTGATCATCATGAT    398
                     ..|||||||  .|| |..|.||||.| ||.||.||..|.||.||.|||||
BPUM_0643___o    351 AGATTCTTC--TACTTTATTAAAAGCTGTCTCAGCTGTTATTATTATGAT    398

BSNT_01145___    399 CTTTTTCACATTATATACCTCTTCCGGTATGGTATCTGGCGGACGGCTGT    448
                     .||.||.|||.|.||.|||||.||.|||||||||||||||||.||..|.|
BPUM_0643___o    399 TTTCTTTACACTGTACACCTCATCAGGTATGGTATCTGGCGGTCGTTTAT    448

BSNT_01145___    449 TTGAATCTGCTTTTGGTGCGGATTACAAATTAGGCCTGTTTCTGACCACC    498
                     |.||||||||.||||||||..||||.|..||.||..|..||.|.|||.| 
BPUM_0643___o    449 TCGAATCTGCGTTTGGTGCCAATTATATGTTTGGTTTAATTTTAACCTC-    497

BSNT_01145___    499 GCAGTTGTCGTG---TTATACACACTGTTTGGCGGTTTCCTTGCTGTCAG    545
                      .|| |.|||||   ||||||||..|.||.|||||.||..|.||.||.||
BPUM_0643___o    498 -TAG-TATCGTGATCTTATACACTTTATTCGGCGGCTTTTTGGCAGTTAG    545

BSNT_01145___    546 TCTGACTGACTTCGTGCAGGGTGCGATCATGTTTGCAGCACTAGTGCTTG    595
                     ..|.|||||.||.||.||.||.||.||.||||||..||||.|||||||.|
BPUM_0643___o    546 CTTAACTGATTTTGTTCAAGGAGCTATTATGTTTTTAGCATTAGTGCTCG    595

BSNT_01145___    596 TGCCGATCGTTGCTTTTACCCATGTGGGCGGC---GTTGCTCC-------    635
                     |||||||||||||.|||||.||..|.||.|||   .||||..|       
BPUM_0643___o    596 TGCCGATCGTTGCCTTTACTCAATTAGGTGGCCCAATTGCCACATATCAA    645

BSNT_01145___    636 GACTTTCCATGAAATCGACGCTGTTAATCCACATTTATTGGATATTTTTA    685
                     ||..|||.|..||          ||.|||||.|.||..|.|||||.||.|
BPUM_0643___o    646 GATATTCAACAAA----------TTGATCCAAAATTGCTTGATATATTCA    685

BSNT_01145___    686 AAGGCGCGAGCGTCATTAGCATTATTTCCTATTTAGCCTGGGGGTTGGGC    735
                     .|||..|||||||||||.||||||||||||..|||||.|||||..|.||.
BPUM_0643___o    686 GAGGAACGAGCGTCATTGGCATTATTTCCTTCTTAGCATGGGGCCTTGGT    735

BSNT_01145___    736 TACTACGGCCAGCCTCATATCATCGTCCGATTTATGGCCATTAAAGAC-A    784
                     ||||..||.|||||.||.||.||.||.|||||.||||||||| |.||| .
BPUM_0643___o    736 TACTTTGGACAGCCGCACATTATTGTTCGATTCATGGCCATT-ACGACTG    784

BSNT_01145___    785 TTAAAGATTTAAAACCTGCACGCCGAATCGGTATGAGCTGGATGATCATT    834
                     |.||||||||||||||.|||||.||.||||||||||||||||||||..|.
BPUM_0643___o    785 TAAAAGATTTAAAACCAGCACGTCGTATCGGTATGAGCTGGATGATTGTG    834

BSNT_01145___    835 ACAGTTCTAGGTTC-----CGTGCTGACGGGTTTAATCGGTGTTGCATAC    879
                     .|.|||.|.|||||     | ||.|    ||.|||.|||||||.||.||.
BPUM_0643___o    835 TCTGTTATTGGTTCATTATC-TGTT----GGATTAGTCGGTGTCGCTTAT    879

BSNT_01145___    880 GCCCAT-AAATTCGGAGT--TGCTGTAAAAGATCCGGAGATGATTTTCAT    926
                     |..||| |.|.|   |||  |.||.||...||.||.||.|..|||||.||
BPUM_0643___o    880 GTACATGAGACT---AGTACTACTTTAGCTGACCCAGAAACCATTTTTAT    926

BSNT_01145___    927 TATCTTCTCTAAAATTTTGTTCCACCCATTAATTACAGGGTTCTTATTGT    976
                     |.|.||.|||||..|.||.|||||.||.|..|||||.||.||.|||.|.|
BPUM_0643___o    927 TGTATTTTCTAAGGTGTTATTCCATCCGTATATTACTGGATTTTTACTCT    976

BSNT_01145___    977 CAGCTATTTTGGCTGCCATCATGAGTTCGATTTCCTCACAGCT-CTTAGT   1025
                     |.||||||||.|||||.||.||||||||||||||.|||||||| ||| ||
BPUM_0643___o    977 CTGCTATTTTAGCTGCGATTATGAGTTCGATTTCGTCACAGCTGCTT-GT   1025

BSNT_01145___   1026 CACAGCAAGTGCTGTAACAGAGGATTTATACCGGTCATTTTTCAGACGAA   1075
                     .||.||||||||..|.||||||||||||||||||.|.||.||.|||.|||
BPUM_0643___o   1026 GACTGCAAGTGCAATGACAGAGGATTTATACCGGACTTTCTTTAGAAGAA   1075

BSNT_01145___   1076 AAGCTTCTGATAAAGAATTGGTCATGATCGGGCGATTGTCCGTCTTAGTC   1125
                     ||||.||.||.||||||.|.||.|||||.||.||..||||.||.||.|||
BPUM_0643___o   1076 AAGCGTCAGACAAAGAACTAGTGATGATTGGACGTATGTCTGTATTGGTC   1125

BSNT_01145___   1126 ATTGCCGTTATCGCGGTACTCTTG----TCATTGAATCCGAACAG-CACC   1170
                     .|||||.||||||||.|    |||    |||.|.||||| ||..| .|||
BPUM_0643___o   1126 GTTGCCATTATCGCGCT----TTGTCTTTCACTTAATCC-AAGTGATACC   1170

BSNT_01145___   1171 ATTCTTGATTTGGTCGGATACGCTTGGGCCGGCTTCGGTTCAGCTTTCGG   1220
                     |||||||||.|.||.||.||.||||||||.|||||.||.||..|.||.||
BPUM_0643___o   1171 ATTCTTGATCTTGTTGGTTATGCTTGGGCAGGCTTTGGATCTTCATTTGG   1220

BSNT_01145___   1221 ACCTGCGATTCTGCTCAGTCTGTATTGGAAACGAATGAACGAATGGGGCG   1270
                     .||.|..||.||.||..|.||.||||||||.|||||||||.|....||.|
BPUM_0643___o   1221 TCCAGTCATCCTTCTATGCCTATATTGGAAGCGAATGAACCATCACGGTG   1270

BSNT_01145___   1271 CGCTTGCTGCCATGATTGTCGGGGCTGCGACCGTGTTGATC------TGG   1314
                     |.||.||.|..|||.||||.|||||.|     .||||| ||      |||
BPUM_0643___o   1271 CACTAGCAGGAATGGTTGTTGGGGCAG-----TTGTTG-TCTTAACATGG   1314

BSNT_01145___   1315 ATTACAACCGGCCTGGCAA-AAT-CAACCGGTGTGTACGAAATCATCCCT   1362
                     |||.||||||||.||  || ||| ||||.||..||||||||||..|.||.
BPUM_0643___o   1315 ATTTCAACCGGCTTG--AATAATACAACTGGCTTGTACGAAATGGTTCCA   1362

BSNT_01145___   1363 GGGTTTATTCTCA---GTATGATTGCCGGCATCATTGTCAGCATGATCAC   1409
                     ||.||||||.|.|   ||.|||.|||   |||||||||||||.|..|.||
BPUM_0643___o   1363 GGATTTATTTTAAGTGGTTTGACTGC---CATCATTGTCAGCCTCTTGAC   1409

BSNT_01145___   1410 ----AAAACGTC-----CTGC--AAAAGCCTCTTACCGATTATTCGGTGT   1448
                         |||.|.||     ||.|  ||||||...|||||.|           
BPUM_0643___o   1410 CAATAAACCATCTAAAGCTTCTAAAAAGCTGTTTACCAA-----------   1448

BSNT_01145___   1449 CATGGAAAAGC-TGTT-AAAACGCAA-AAAGTAA   1479
                     .||||||||.| |.|| ||.|.|.|| |||.|||
BPUM_0643___o   1449 AATGGAAAATCATCTTGAAGAAGAAACAAAATAA   1482


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