Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01139 and BPUM_0640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_01139___yerI.1.24716.seq
# -bsequence dna-align/BPUM_0640___yerI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01139___yerI-BPUM_0640___yerI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01139___yerI-BPUM_0640___yerI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01139___yerI
# 2: BPUM_0640___yerI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1057
# Identity: 727/1057 (68.8%)
# Similarity: 727/1057 (68.8%)
# Gaps: 104/1057 ( 9.8%)
# Score: 2361.0
#
#
#=======================================
BSNT_01139___ 1 ATGCATAAAGATATCAAAAAAATATTTGAGGAAGAGCAGGTTTTGGCAGA 50
||||||||||||.|.|||...||||.|||.|||....|..||||
BPUM_0640___y 1 ATGCATAAAGATGTAAAAGCCATATATGATGAATCAAAAATTTT------ 44
BSNT_01139___ 51 AGCTGCAGCGA------GATACGGTTTCTCAAAAGATCAG----GTG--- 87
||.||..||.| .|||||| ||..||| |||
BPUM_0640___y 45 AGATGAGGCCACTCATTTATACGG---------AGTCCAGCGAAGTGACA 85
BSNT_01139___ 88 --CGTTTTCTGGCTGATGCGGAAAACTATGTATATGAATGTATGAAAGAC 135
|.||||.|.||.|||||.|||||||||||.||||||..||..||||||
BPUM_0640___y 86 TCCATTTTATCGCAGATGCAGAAAACTATGTGTATGAACTTAAAAAAGAC 135
BSNT_01139___ 136 ----AATCAACCTTATATTTTAAAGATTACCCATACGATTCGGAGATCTT 181
|.| |||||||||||||.|||||||||||.||.||.|||||..
BPUM_0640___y 136 GGAGAGT----CTTATATTTTAAAAATTACCCATACCATCCGCAGATCAC 181
BSNT_01139___ 182 CTGATTATATGATGGGAGAGATGGAATGGCTCCGTCACCTTGCAATAGGG 231
|||||||.||..|.||.||.|||||||||||||.||||.|.||.| ||||
BPUM_0640___y 182 CTGATTACATTTTAGGTGAAATGGAATGGCTCCATCACTTAGCGA-AGGG 230
BSNT_01139___ 232 -GGAATTTCAGTAGCCAAACC----GCTCCCGTCGCTGAACGGAAAAGAC 276
|||.||||.||.||.||||| ||| ||..|.||.||....||.
BPUM_0640___y 231 CGGACTTTCGGTTGCGAAACCAATTGCT----TCATTAAATGGCCGTGAT 276
BSNT_01139___ 277 GTAGAAGCAGT-GCCGGACGGAAACGGCGGGTCATTTTTATTGAGAGTGT 325
.|.|||..||| |.| ||.||..|.|||||.|||||||||.||.||||.|
BPUM_0640___y 277 ATTGAACAAGTAGAC-GATGGGCAAGGCGGTTCATTTTTACTGCGAGTCT 325
BSNT_01139___ 326 ATGAGAAAGCGCCAGGGCAAAAAGTGGATGAATCGGACTGGAATGA--AA 373
||||.|||||.|||||.||.|||||.||.||..|.||||||||||| ||
BPUM_0640___y 326 ATGAAAAAGCACCAGGCCACAAAGTCGAAGAGGCAGACTGGAATGATGAA 375
BSNT_01139___ 374 CGCTATTTTATGAGCTTGG-CAGATACACAGGCAGCATGCACAGCCTGAC 422
.|||||||||..||||| ||| |||||||||.|||||||.|..|||||
BPUM_0640___y 376 --TTATTTTATGCCCTTGGACAG-TACACAGGCCGCATGCATAAACTGAC 422
BSNT_01139___ 423 AAAAAGCTACAAATTGAG----CAATCCCGC--TTTCAAAAGACAGGAAT 466
||||||||| |.|| ||..||||| |.| ||||||||.||.|
BPUM_0640___y 423 AAAAAGCTA-----TCAGCTGTCAGACCCGCGATAT-AAAAGACAAGAGT 466
BSNT_01139___ 467 GGGATGAAGAGGAGCA-ATTAAAGCTGA-GAAAATATGTGCCTGAAGATC 514
|||||||||||||||| .||||| |.| |.||.|||||.||.|..||||
BPUM_0640___y 467 GGGATGAAGAGGAGCAGCTTAAA--TTACGTAAGTATGTCCCAGCCGATC 514
BSNT_01139___ 515 AGA----TAAAGGTGTTTCAGCAAGCCGATTCTTTGATGAATGAACTGCG 560
||| | |||||..|.|||||.|||...||||||.|..|.|||..
BPUM_0640___y 515 AGACGCTT----GTGTTCGAACAAGCGGATCGGTTGATGGAAAAGCTGGC 560
BSNT_01139___ 561 GAGGCTCCCGAAAAGCCAGGACAGCTATGGCTTGGTGCATGCGGATCTGC 610
.|.|||.|||||||..|||||.|..||.||.|||||.|||||||||||.|
BPUM_0640___y 561 AAAGCTTCCGAAAAATCAGGATACGTACGGATTGGTTCATGCGGATCTAC 610
BSNT_01139___ 611 ACCATGGCAATTTTAACTGGGATCATGGCAAAATCACGGCATTTGATTTT 660
|.||.||.||.||..||||||||||.||||||||.|||.|.||||||||.
BPUM_0640___y 611 ATCACGGAAACTTCCACTGGGATCAAGGCAAAATTACGACCTTTGATTTC 660
BSNT_01139___ 661 GATGATATCGGCTACAACTGGTTTGTTAACGATATTAGCATTCTTCTCTA 710
|||||||||||.||||||||||||.|.||.||.||||||||..|.||.||
BPUM_0640___y 661 GATGATATCGGGTACAACTGGTTTATGAATGACATTAGCATATTGCTATA 710
BSNT_01139___ 711 CAATGTCCTGTGGTATCCTGTTGTGCCATATGATGATAAAGCTGCGTTTA 760
||||||..|||||||.||.|||.|.|||||.||.||.|||||.||.|||.
BPUM_0640___y 711 CAATGTGTTGTGGTACCCAGTTATTCCATACGAAGACAAAGCAGCTTTTG 760
BSNT_01139___ 761 CAGAAGAATTTATGACGCATTTTATGAAAGGGTACTGGGAGGAAAATGAG 810
|||.|.|.|||||||.|||.||..|||||||.||..|.||.||.||||||
BPUM_0640___y 761 CAGGAAACTTTATGAAGCAGTTCCTGAAAGGCTATCGTGAAGAGAATGAG 810
BSNT_01139___ 811 CTTGACCCTGCATGGCTGATG-ATA-ATACCTGATTTCCTCCGCCTTCGC 858
||||....||..||||| || .|| ||.|||||.|||||.|||.|.||.
BPUM_0640___y 811 CTTGGGGATGAGTGGCT--TGCCTACATTCCTGACTTCCTTCGCTTACGT 858
BSNT_01139___ 859 CATATGCTGATTTACGGATTGCTGCATCAGATGTTTGACCTTAAC-ACAA 907
||..||||.||.||.||.|||||||||||....||||| .||..| ||.|
BPUM_0640___y 859 CACGTGCTAATCTATGGCTTGCTGCATCAAGCATTTGA-TTTGGCTACCA 907
BSNT_01139___ 908 TAGGAGAAGAGGAAAAAGAAATGCTGGCCGGTTTCAGAAGAGATATAGAG 957
|.||||||||.||.||.|..|||||.||..|||||.|....||.||.|||
BPUM_0640___y 908 TTGGAGAAGAAGAGAAGGGCATGCTCGCTAGTTTCCGCTCCGACATTGAG 957
BSNT_01139___ 958 AATG--GCACGCCGATTACAGCATTTGATTTTTCAGCACTGGTGTAG--- 1002
.|.| ||| ||||||||..|.|||||.|||.||..||| .||
BPUM_0640___y 958 CAAGCAGCA--CCGATTACGACGTTTGACTTTACAAAACT----CAGTCA 1001
BSNT_01139___ 1002 ------- 1002
BPUM_0640___y 1002 ATCTTAA 1008
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