Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01133 and BPUM_0626
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_01133___ligA.1.24716.seq
# -bsequence dna-align/BPUM_0626___ligA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01133___ligA-BPUM_0626___ligA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01133___ligA-BPUM_0626___ligA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01133___ligA
# 2: BPUM_0626___ligA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2058
# Identity: 1500/2058 (72.9%)
# Similarity: 1500/2058 (72.9%)
# Gaps: 102/2058 ( 5.0%)
# Score: 5330.5
#
#
#=======================================
BSNT_01133___ 1 ATGGACAAAGAAACAGCGAAGCAGCGGGCAGAAGAACTGCGCCGCACCA- 49
|||||.||||||.|||||||.|..|||...||.||||| ||||.|
BPUM_0626___l 1 ATGGATAAAGAAGCAGCGAAACGCCGGATCGAGGAACT-----GCACGAG 45
BSNT_01133___ 50 ----TCAACAAGTATAGCTATGAATATTACACCCTAGATGAACCGAGCGT 95
|.|||.|.||.|.|||.||||||.|.||.||.|||...||.||.||
BPUM_0626___l 46 ATTTTGAACCAATACAACTACGAATATCATACACTGGATCGTCCAAGTGT 95
BSNT_01133___ 96 CCCTGATGCGGAATATGACAGATTG-----ATGCAGGAGCTGATCGCGAT 140
.|||||.||.|||||||| || ||||..|||||||||.|..|
BPUM_0626___l 96 TCCTGACGCTGAATATGA-----TGCGCGAATGCGTGAGCTGATCTCTTT 140
BSNT_01133___ 141 CGAGGAGGAGCATCCAGATCTCAGAACGCCTGACTCTCCTACGCAGCGCG 190
.|||||.|||||.||.|||.|.|.|.|..|.||||||||..|.||..|.|
BPUM_0626___l 141 AGAGGAAGAGCACCCTGATTTAAAAGCAGCGGACTCTCCCTCACAAAGAG 190
BSNT_01133___ 191 TCGGCGGAGCCGTGCTTGAAGCGTTTCAAAAAGTCACCCACGGCACACCG 240
|.||.||.||.|||.|.||.||.||.||||||||....||.|||||||||
BPUM_0626___l 191 TAGGAGGCGCTGTGTTAGACGCCTTCCAAAAAGTGCGTCATGGCACACCG 240
BSNT_01133___ 241 ATGCTCAGTCTGGGCAACGCCTTTAATGCTGATGATCTTCGTGATTTCGA 290
||||||||.||.||.||.||.|||||||...|.||.||||.||||||.||
BPUM_0626___l 241 ATGCTCAGCCTTGGGAATGCGTTTAATGAACAGGACCTTCTTGATTTTGA 290
BSNT_01133___ 291 CCGCCGTGTGCGCCAAGCCGTCGGTGACGATGTGGCGTATAATGTGGAGC 340
||||||.||.||.|||||.||||||||||||.|.||.||.|||||.||||
BPUM_0626___l 291 CCGCCGGGTTCGTCAAGCAGTCGGTGACGATATCGCATACAATGTCGAGC 340
BSNT_01133___ 341 TGAAAATAGACGGTCTTGCTGTTTCTCTCCGTTATGAAGACGGCTATTTT 390
|||||||.|||||.||.|||||||||||||||||||||.|.|||...|||
BPUM_0626___l 341 TGAAAATTGACGGACTCGCTGTTTCTCTCCGTTATGAAAATGGCGTGTTT 390
BSNT_01133___ 391 GTCAGAGGGGCCACCCGAGGTGACGGAACGACGGGAGAGGATATTACGGA 440
||..||||.||.||.||.||.||.||.||.|||||.|||||||||||.||
BPUM_0626___l 391 GTTCGAGGTGCTACTCGTGGAGATGGGACAACGGGTGAGGATATTACTGA 440
BSNT_01133___ 441 GAATCTGAAGACGATTCGCAATATCCCCCTCAAAATGAACCGTGAGCTGT 490
.||.||.||.||.|||||....|||||.||||||||.||.|||....|||
BPUM_0626___l 441 AAACCTCAAAACCATTCGTTCGATCCCACTCAAAATCAAACGTCCTTTGT 490
BSNT_01133___ 491 CGATCGAAGTGCGCGGCGAGGCGTATATGCCGAAGCGTTCGTTTGAAGCA 540
|.||.||||||.|.||||||||.|.||||||.||.|.|||.|||||||||
BPUM_0626___l 491 CTATTGAAGTGAGAGGCGAGGCATTTATGCCAAAACCTTCTTTTGAAGCA 540
BSNT_01133___ 541 CTCAATGAGGAACGGATTA-AAAATGAGGAAGAACCGTTCGCCAATCCGC 589
.|.||.|| .||..||||| ||||.||.|||||.|||||.||.||.||||
BPUM_0626___l 541 TTAAACGA-AAAAAGATTACAAAACGAAGAAGAGCCGTTTGCGAACCCGC 589
BSNT_01133___ 590 GAAATGCCGCGGCGGGATCACTTAGGCAGCTCGATCCGAAAATTGCAGCG 639
|.|||||.||.||.||.||||||.|.|||||.|||.|.||||||||||||
BPUM_0626___l 590 GTAATGCGGCCGCCGGCTCACTTCGTCAGCTTGATACAAAAATTGCAGCG 639
BSNT_01133___ 640 AAACGAAACCTCGATATCTTCGTCTACAGTATAGCGGAGCTTGACGAGAT 689
|||||||||||.||||||||||||||||||||||||||||||||.||.||
BPUM_0626___l 640 AAACGAAACCTTGATATCTTCGTCTACAGTATAGCGGAGCTTGATGAAAT 689
BSNT_01133___ 690 GGGTGTGGAGACGCAAAGCCAAGGGCTTGATTTTCTCGACGAACTCGGAT 739
.|||||.||..||||||||.||||.||.|||.|||||||.|||||.||.|
BPUM_0626___l 690 TGGTGTTGAATCGCAAAGCGAAGGACTCGATCTTCTCGATGAACTTGGCT 739
BSNT_01133___ 740 TTAAAACGAATCAGGAACGAAAAAAATGCGG-CG------AC-ATAGAAG 781
|||||||||| .|||.|||..||| || || ||.||.|
BPUM_0626___l 740 TTAAAACGAA--------CAAAGAAAGACGGACGTGCCAAACGATTGAGG 781
BSNT_01133___ 782 AAGTCATTACGCTGATCGA-----TGAGCTTCAGGCGAAGCGCGCTGACC 826
||||.||...|||.||.|| ||| |..|||||||.||.||..
BPUM_0626___l 782 AAGTGATCGAGCTCATTGAAACACTGA-----AAACGAAGCGTGCCGATT 826
BSNT_01133___ 827 TGCCGTATGAAATAGACGGCATTGTTATTAAAGTCGATTCTCTCGATCAA 876
|..|.||||||||.||.||.|||||.||.|||||||||||..|.|.|||.
BPUM_0626___l 827 TTTCATATGAAATCGATGGAATTGTGATCAAAGTCGATTCGTTAGCTCAG 876
BSNT_01133___ 877 CAGGAGGAGCTCGGTTTTACGGCGAAAAGCCCGCGCTGGGCCATCGCGTA 926
||.||.||||||||.|||||.||.|||||.||.||||||||..|.|||||
BPUM_0626___l 877 CAAGAAGAGCTCGGCTTTACAGCTAAAAGTCCTCGCTGGGCTGTTGCGTA 926
BSNT_01133___ 927 TAAGTTTCCTGCTGAAGAGGTCGTGACGAAGCTTCTCGATATCGAATTAA 976
.||||||||.|||||||||||||||||.|||||.||.|||||.||..|||
BPUM_0626___l 927 CAAGTTTCCAGCTGAAGAGGTCGTGACAAAGCTACTTGATATTGAGCTAA 976
BSNT_01133___ 977 ATGTCGGCAGAACGGGTGTGATCACGCCGACCGCGATTCTTGAGCCGGTA 1026
.||||||..|.||.|||||.|||||.||.||.|||||.||||||||.||.
BPUM_0626___l 977 GTGTCGGACGTACAGGTGTCATCACACCAACGGCGATCCTTGAGCCTGTC 1026
BSNT_01133___ 1027 AAAGTTGCCGGCACAACGGTCTCAA-GAGCATCCCTTCATAACGAAGATT 1075
|||||.||.||.||.||.|| .||| ||||.||.||||||||.|||||||
BPUM_0626___l 1027 AAAGTAGCAGGAACGACAGT-ACAACGAGCGTCTCTTCATAATGAAGATT 1075
BSNT_01133___ 1076 TAATTAAAGAGAAGGACATTCGGATTTTGGATAAGGTTGTCGTCAAAAAA 1125
|.||.|||||.|||||.|||||..||.|.|||.|.||..|.||.||||||
BPUM_0626___l 1076 TGATCAAAGAAAAGGATATTCGCCTTCTTGATCAAGTGATTGTGAAAAAA 1125
BSNT_01133___ 1126 GCGGGCGATATCATCCCGGAAGTTGTGAATGTCCTCGTTGAACAGCGCAC 1175
|||||||||||.||.||.|||||.|....|||.||..|.||.|||||.||
BPUM_0626___l 1126 GCGGGCGATATTATTCCAGAAGTCGCAGGTGTACTGATCGATCAGCGTAC 1175
BSNT_01133___ 1176 AGGAGAAGAAAAGGAA----TTCAGCATGCCGACGGAATGTCCTGAATGC 1221
||||||||||| || |||| |||||||||||||||.||.||.||.
BPUM_0626___l 1176 AGGAGAAGAAA---AACCGTTTCA-CATGCCGACGGAATGCCCAGAGTGT 1221
BSNT_01133___ 1222 GGCAGTGAACTCGTCCGGATCGAAGGAGAAGTGGCGCTTCGCTGCATTAA 1271
...|||||.||.||..|.||.|||||.||||||||..|.||.|||||.||
BPUM_0626___l 1222 CATAGTGAGCTGGTGAGAATTGAAGGTGAAGTGGCTTTACGTTGCATCAA 1271
BSNT_01133___ 1272 CCCTGAATGTCCGGCGCAAATCCGGGAAGGGCTTATCCATTTCGTTTCCC 1321
.||.|||||.||.||.|||||.||.||.||.||.||.||.||.|||||.|
BPUM_0626___l 1272 TCCAGAATGCCCTGCCCAAATACGTGAGGGACTCATTCACTTTGTTTCAC 1321
BSNT_01133___ 1322 GCAATGCCATGAACATTGATGGGCTCGGCGAACGAGTGATCACACAGCTG 1371
|||||||.|||||||||||||||||.|||||.||.||.||.||||||||.
BPUM_0626___l 1322 GCAATGCAATGAACATTGATGGGCTTGGCGAGCGGGTCATTACACAGCTT 1371
BSNT_01133___ 1372 TTTGAGGAAAACCTTGTC---CGCAATGTGGCAGATTTATA-----TAAG 1413
||..|.|||.|.|||||| || ||||.|.|||.|.|| ||
BPUM_0626___l 1372 TTCAAAGAACAGCTTGTCTCTCG---TGTGTCCGATCTTTACCGATTA-- 1416
BSNT_01133___ 1414 CTGACGAAGGAACGAGTCATCCAGCTCGAGCGCATGGGCGAAAA----GT 1459
|||||.|||..|.||||.||.||.|||||.||||||||||| ||
BPUM_0626___l 1417 ---ACGAAAGAAGAACTCATTCAACTTGAGCGAATGGGCGAAAAATCTGT 1463
BSNT_01133___ 1460 CCACTGAAAACCTGATCAGCTCCATCCAAAAATCAAAAGAAAATTCGTTA 1509
| |||||..|..|..|.||.||..|..||||.||||||||.||..||
BPUM_0626___l 1464 C----GAAAATTTACTGCGTTCGATTGAGCAATCGAAAGAAAACTCTCTA 1509
BSNT_01133___ 1510 GAGCGCCTGCTGTTTGGGCTTGGCATCCGTTTTATCGGATCAAAGGCCGC 1559
|||||..|..|.|||||.||.||.||.||.|||||.||.||.||.||.||
BPUM_0626___l 1510 GAGCGTTTATTATTTGGACTCGGTATACGATTTATTGGCTCCAAAGCGGC 1559
BSNT_01133___ 1560 AAAGACGCTTGCCA-TGCATTT---TGAAAGCTTGGAGAACCTGAAAAAA 1605
|||.|| ||||.|| ||||||| |||.| |.||..|..|.||..||
BPUM_0626___l 1560 AAAAAC-CTTGGCACTGCATTTCGGTGATA---TCGATCAATTAAAGCAA 1605
BSNT_01133___ 1606 GCCTCTAAAGAGGAACTTCTCGCGGTAGATGAAATCGGTGAAAAAATGGC 1655
||..|.|||||..||.|.||||..||.|||||||||||||||||||||||
BPUM_0626___l 1606 GCGACGAAAGAACAATTACTCGAAGTTGATGAAATCGGTGAAAAAATGGC 1655
BSNT_01133___ 1656 TGATGCTGTGATCACCTATTTTCATAAAGAAGAAATGCTTGAACTCTTGA 1705
|||||||||..||||.||.|||.|.|||||||||||.||..|.||.||.|
BPUM_0626___l 1656 TGATGCTGTTGTCACGTACTTTGAAAAAGAAGAAATACTCAATCTGTTAA 1705
BSNT_01133___ 1706 ATGAACTTCAGGAGCTGGGCGTAAACACGCTCTACAAAGGCCCGAAAAAA 1755
|||||||..|.|||||.||.||.||.|.|..|||.|.|||.||.|||..|
BPUM_0626___l 1706 ATGAACTAAAAGAGCTTGGGGTCAATATGACCTATACAGGACCAAAACCA 1755
BSNT_01133___ 1756 GTAAAAGCAGAGGACAGCGACTCTTACTTTGCCGGTAAAACAATTGTTCT 1805
||.||.|..||.||.||.||.||.||.|||||.||.|||||.|||||.||
BPUM_0626___l 1756 GTGAAGGTTGAAGAAAGTGATTCCTATTTTGCAGGCAAAACCATTGTGCT 1805
BSNT_01133___ 1806 GACAGGAAAGCTGGAAGAGCTGTCAAGAAACGAAGCCAAAGC-GCAAATC 1854
||||||.||..|.|||||..||.||.|||||||.||.||||| || .|||
BPUM_0626___l 1806 GACAGGGAAATTAGAAGAAATGGCACGAAACGATGCAAAAGCAGC-GATC 1854
BSNT_01133___ 1855 GAAGCGCTGGGCGGAAAGCTGACTGGAAGCGTCAGCAAAAACACAGACTT 1904
|||||..||||.||.||.|||.|.||.||.||.||.||.||.|||||.||
BPUM_0626___l 1855 GAAGCATTGGGTGGTAAACTGGCAGGTAGTGTGAGTAAGAAAACAGATTT 1904
BSNT_01133___ 1905 AGTCATCGCCGGAGAAGCGGCGGGAAGCAAGCTGACAAAAGCACAAGAGC 1954
||||||.|||||||||||.||||||||.|||||||||||.|||.||||.|
BPUM_0626___l 1905 AGTCATTGCCGGAGAAGCAGCGGGAAGTAAGCTGACAAAGGCAGAAGAAC 1954
BSNT_01133___ 1955 TGAACATTGAAGTGTGGAATGAAGAACAGTTAA-----TGGGAGAGCTAA 1999
|.||.||||||.|.|||.|.|| |||||| |.|..|||||||
BPUM_0626___l 1955 TTAATATTGAAATTTGGGACGA-----AGTTAAAATGCTCGAGGAGCTAA 1999
BSNT_01133___ 2000 AGAAATAA 2007
||||||||
BPUM_0626___l 2000 AGAAATAA 2007
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