Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01131 and BPUM_0624

See Amino acid alignment / Visit BSNT_01131 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:45
# Commandline: needle
#    -asequence dna-align/BSNT_01131___pcrB.1.24716.seq
#    -bsequence dna-align/BPUM_0624___pcrB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01131___pcrB-BPUM_0624___pcrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01131___pcrB-BPUM_0624___pcrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01131___pcrB
# 2: BPUM_0624___pcrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 838
# Identity:     499/838 (59.5%)
# Similarity:   499/838 (59.5%)
# Gaps:         179/838 (21.4%)
# Score: 1624.5
# 
#
#=======================================

BSNT_01131___      0 --------------------------------------------------      0
                                                                       
BPUM_0624___p      1 ATGAACACCATTTTCAAAAGAATGAAACTTTTAGCTGAAGGAGGTTACCC     50

BSNT_01131___      0 --------------------------------------------------      0
                                                                       
BPUM_0624___p     51 ATTTTTTGCGGTCACTGATTTTGTTATAATATTTAAATGGAATGAAACGA    100

BSNT_01131___      1 -----------------GTGTACGATGTAACAGAGTGGAAGCATGTCTTT     33
                                      .||||.|||||.||.||||||||||||||||||
BPUM_0624___p    101 ATGGAGGAACATTTTTCATGTATGATGTTACCGAGTGGAAGCATGTCTTT    150

BSNT_01131___     34 AAACTCGATCCAAATAAAGATTTGCCTGACGAACAGCTGGAGATTCTTTG     83
                     |||||||||||.||||||||..|..|.||.||||||||.|||....||||
BPUM_0624___p    151 AAACTCGATCCGAATAAAGAAATATCCGATGAACAGCTAGAGGCGATTTG    200

BSNT_01131___     84 CGAATCAGGAACGGATGCGGTCATT-ATCGGAGGCAGTGATGGTGTGACA    132
                     ||||||.||.|||||||||.| ||| ||.||.||||||||...|||||||
BPUM_0624___p    201 CGAATCTGGTACGGATGCGAT-ATTGATTGGCGGCAGTGACAATGTGACA    249

BSNT_01131___    133 GAGGATAATGTCCTGCGGATGATGTCTAAGGTAAGACGGTTTTTGGTGCC    182
                     |||||.||.||.||.|...|||||||.|||||..|.||||||.|.|||||
BPUM_0624___p    250 GAGGACAACGTGCTTCAATTGATGTCAAAGGTCCGCCGGTTTCTTGTGCC    299

BSNT_01131___    183 GTGTGTCCTTGAGGTATCAGCGATTGAAGCGATCGTTCCCGGCTTTGACT    232
                     .|||||.|||||..|.|||.|...||||..|||.||.||.||||||||..
BPUM_0624___p    300 ATGTGTGCTTGAAATCTCAACACATGAAATGATTGTGCCGGGCTTTGATC    349

BSNT_01131___    233 TATATTTTATTCCGAGTGTATTAAACAGCAAAAACGCGGATTGGATTGTC    282
                     |.|||||.|||||||..||.|||||||||....|..|.|||||||||||.
BPUM_0624___p    350 TGTATTTCATTCCGACCGTCTTAAACAGCTCTCATCCTGATTGGATTGTT    399

BSNT_01131___    283 GGAATGCACCAGAAAGCCATGAAGGAATACGGAGAACTGATGTCTATGGA    332
                     ||..|.|||.||.|.||.||||||||||.|||.||..|||||||.|||||
BPUM_0624___p    400 GGGCTTCACAAGGACGCGATGAAGGAATTCGGTGATTTGATGTCAATGGA    449

BSNT_01131___    333 AGAAATCGTGGCGGAGGGCTACTG-CATCGCAAATCCAGATTGCAAAGCC    381
                     |||.||||||.|.||.||||| || .||...||||..|||.||.|||||.
BPUM_0624___p    450 AGAGATCGTGCCTGAAGGCTA-TGTGATTTTAAATGAAGAATGTAAAGCG    498

BSNT_01131___    382 GCGGCA--CTGACTGAAGCGGACGCCGATCTGAATATGGATGATATTGTC    429
                     ||  ||  ||.||.|||||..|..|.|..|||.|.||.|||||..|....
BPUM_0624___p    499 GC--CAAGCTTACAGAAGCAAATACAGCACTGGACATCGATGACGTAAGA    546

BSNT_01131___    430 GCCTATGCGCGTGTGTCGGAGC---TGCTGCAACTGCCGATTTTTTATTT    476
                     ||.|||||..|.|||.|.||||   ||.||.|.|||||.|||||||||.|
BPUM_0624___p    547 GCATATGCAAGAGTGGCAGAGCATTTGATGAAGCTGCCCATTTTTTATCT    596

BSNT_01131___    477 AGAATACAGCGGCATGCTTGGAGACATAGAAGCT-GTCAAGAAAACGAAG    525
                     ||||||||||||.|.|||||||||.|||| ||.| ||.||..|||||||.
BPUM_0624___p    597 AGAATACAGCGGAACGCTTGGAGATATAG-AGTTAGTGAAAGAAACGAAA    645

BSNT_01131___    526 GCTG---TATTGGAAACG--TCAACCTTGTTTTATGGGGGCGGCATCAAG    570
                     ||.|   |.|..||.|||  ||     |.||||||||.||.|||||    
BPUM_0624___p    646 GCAGTGCTTTCTGATACGGTTC-----TTTTTTATGGCGGGGGCAT----    686

BSNT_01131___    571 GATGCGGAAACGGCCAAGCAGTACGCAG------------AGCATGCGGA    608
                          .||||..||.||.|||   ||||            ||||||||||
BPUM_0624___p    687 -----TGAAAACGCAAAACAG---GCAGAAGATTTTGCGCAGCATGCGGA    728

BSNT_01131___    609 CGTGATCGTTGTAGGCAATGCTGTGTATGAAGATTTTGACAG-GGCTTTG    657
                     ||||.|.||||||||.||.|...|.|||| |.|.|||.|.|| .||.||.
BPUM_0624___p    729 CGTGGTTGTTGTAGGAAACGTCATTTATG-ACAATTTCAAAGAAGCATTA    777

BSNT_01131___    658 AAAACAGT-AGCGGCTGTGAAAGGCGA-------GTAG    687
                     ||.||||| ||| ||.||.|||    |       .|||
BPUM_0624___p    778 AAGACAGTGAGC-GCAGTCAAA----AAATCATCATAG    810


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