Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04681 and BPUM_0623
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_04681___yuzE.1.24716.seq
# -bsequence dna-align/BPUM_0623.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04681___yuzE-BPUM_0623.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04681___yuzE-BPUM_0623.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04681___yuzE
# 2: BPUM_0623
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity: 229/498 (46.0%)
# Similarity: 229/498 (46.0%)
# Gaps: 192/498 (38.6%)
# Score: 383.5
#
#
#=======================================
BSNT_04681___ 1 ATGAA---GGCCGTGACATACGATACA---GAT-----TCAGAACTGGCT 39
.|||| .|||.|.|||||.||| || ||| ||.||
BPUM_0623 1 TTGAAAAGAGCCATCACATATGAT-CAAACGATCGACATCGGA------- 42
BSNT_04681___ 40 TATATCTATGTTCTTCCTCCG-----------AA--AAAGAACAGGAATG 76
||.||||||.|.||.|||..| || |||||| |..|.||
BPUM_0623 43 TACATCTATCTCCTGCCTGTGGGAATTGGGACAATCAAAGAA-ACCATTG 91
BSNT_04681___ 77 TACGGACTGAGGAGCTCAGA-GTCAATGATTGTCTCCTGCTGGATATCAG 125
.| |.||| ||.|||||.|||.|.....|.|||||...
BPUM_0623 92 AA-------------TTAGATGTAAATGAATGTGTGAACGTAGATATTGA 128
BSNT_04681___ 126 CCAAGATGGCAAAATCGCCGGATTCGAATGTTTTGGTGAGGCAGCACACC 175
|.||||.|||..|.|.||.||.||.||.|..||||..||.| |.|||
BPUM_0623 129 CAAAGAGGGCCGAGTAGCTGGTTTGGAGTTATTTGCAGAAG----AAACC 174
BSNT_04681___ 176 TCTGTGCCCCATTTGCCGGGAA--AT---CCCGGCTAT----ATG----- 211
...|| ||| ||| || ||||..||| |||
BPUM_0623 175 AAGGT------TTT-----GAAGCATGCACCCGTTTATGAGGATGAGCTT 213
BSNT_04681___ 212 ----------TAAAAGATTCAGACGGT----------TATCATTT-TCGG 240
|.|.||| ||||...|| |||||||| ||.|
BPUM_0623 214 TCGTTACGTTTTACAGA-TCAGGAAGTTCTCTCAACCTATCATTTATCAG 262
BSNT_04681___ 241 GTCTGTCA--GCATGCTTCAGTCCGTTCCTGCTATACGGTGTACCGTG-T 287
| || |.|| ||| || |.||..||| |.|| |
BPUM_0623 263 G-----CATTGAAT--TTC------TT--TTCTCGACG------CCTGAT 291
BSNT_04681___ 288 CAC------TT--TCTGTTTTTCAGATGGT-----------GACTAT--- 315
||| || ||.|||||.| |||.|| || |||
BPUM_0623 292 CACGAAGGGTTGATCGGTTTTAC-GATTGTCGATCCTCTTCGA-TATAAC 339
BSNT_04681___ 316 -------------CAGGAATTTGCCGGCTTTGACCTTGATGGAACAATGT 352
||.|||....|| |.||||| ||||
BPUM_0623 340 ATCAAAAAAAAGACAAGAAAAAACC-GTTTTGA-----ATGG-------- 375
BSNT_04681___ 353 ATCATAGTGCGTTTTTACA----------GCGCTTAACTGAAAAATAG 390
|||.|..| ||||||.|| .|||||.|.|||
BPUM_0623 376 -TCAAAACG-GTTTTTCCAAACTATTGTCTCGCTTCATTGA------- 414
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