Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01127 and BPUM_0619

See Amino acid alignment / Visit BSNT_01127 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:45
# Commandline: needle
#    -asequence dna-align/BSNT_01127___yerC.1.24716.seq
#    -bsequence dna-align/BPUM_0619___yerC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01127___yerC-BPUM_0619___yerC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01127___yerC-BPUM_0619___yerC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01127___yerC
# 2: BPUM_0619___yerC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     245/328 (74.7%)
# Similarity:   245/328 (74.7%)
# Gaps:          26/328 ( 7.9%)
# Score: 936.5
# 
#
#=======================================

BSNT_01127___      1 ATGCAAATCGATAAATTACGCGGCAAAGAGC-TGGACCAGTTATTTAACT     49
                     ||||||||.|||||||||.|.|||||| ||| |.||.||||||||.||||
BPUM_0619___y      1 ATGCAAATTGATAAATTAAGGGGCAAA-AGCTTAGATCAGTTATTCAACT     49

BSNT_01127___     50 CGATCTTATCGCTGAAAGACCTGGAGGAATGTTACCGATTCTTCGATGAT     99
                     |.||||||||.||.|||||||||||.|||||.||.||||||||.||||||
BPUM_0619___y     50 CCATCTTATCCCTTAAAGACCTGGAAGAATGCTATCGATTCTTTGATGAT     99

BSNT_01127___    100 CTATGCACAATTAACGAAATTCAATCGCTGGCTCAGCGCCTTGAAGTGGC    149
                     .|.||.||.||.||.|||||||||||..|..|.|||||.||||||||.||
BPUM_0619___y    100 TTGTGTACCATCAATGAAATTCAATCTTTATCACAGCGTCTTGAAGTAGC    149

BSNT_01127___    150 GCGCATGCTTCGCGAAGGAAACACGTATCATAAGATTGAAACAGAAACAG    199
                     .||.|||||||||||.|||||||||||||||||.|||||.||.||.||||
BPUM_0619___y    150 ACGTATGCTTCGCGAGGGAAACACGTATCATAAAATTGAGACGGAGACAG    199

BSNT_01127___    200 GCGCTTCCACGGCTACGATTTCCCGTGTGAAACGCTGCTTAAATTACGGG    249
                     |.||...|||.||.||.||.||.||.||.|||||||||||.||.|||||.
BPUM_0619___y    200 GTGCAAGCACTGCAACCATCTCACGAGTCAAACGCTGCTTGAACTACGGA    249

BSNT_01127___    250 AATGACGCTTATGAAATGGCGCTTGACCGTGT---------GAAGGAGAA    290
                     ||.||.||.|||..||||||.||||||||.||         |.|||..||
BPUM_0619___y    250 AACGATGCCTATACAATGGCACTTGACCGCGTAGCAGAACAGCAGGCAAA    299

BSNT_01127___    291 T---GAAACAGAGTCTTCTTCCAAATAA    315
                     |   ||||||            ||||||
BPUM_0619___y    300 TGACGAAACA------------AAATAA    315


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