Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01116 and BPUM_0607
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:45
# Commandline: needle
# -asequence dna-align/BSNT_01116___purD.1.24716.seq
# -bsequence dna-align/BPUM_0607___purD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01116___purD-BPUM_0607___purD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01116___purD-BPUM_0607___purD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01116___purD
# 2: BPUM_0607___purD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1309
# Identity: 946/1309 (72.3%)
# Similarity: 946/1309 (72.3%)
# Gaps: 74/1309 ( 5.7%)
# Score: 3261.5
#
#
#=======================================
BSNT_01116___ 1 GTGAATGTATTAATTATCGGCAAAGGCGGAAGAGAACATACGCTGGCGTG 50
|||||.||||||||||||||||.||||||||||||.|||||..|.||.||
BPUM_0607___p 1 GTGAACGTATTAATTATCGGCAGAGGCGGAAGAGAGCATACCATCGCATG 50
BSNT_01116___ 51 GAAGGCAGCG---CAAAGTAGTCTCGTCGAG--AATGTATTTGCAGCTCC 95
||| ||.| ||||||...||.||| || || ||.||||..||.||
BPUM_0607___p 51 GAA---AGTGAACCAAAGTGAACTTGTC-AGCCAA-GTTTTTGTCGCACC 95
BSNT_01116___ 96 TGGAAATGACGGCATGGAAGCTTCCGCACAGCTTGTAAACATTGAGGAAA 145
.||.|||||.||.|||..||.|.|.||..|||||||....|||||.|||.
BPUM_0607___p 96 CGGCAATGATGGAATGACAGATGCTGCGAAGCTTGTCCCAATTGACGAAG 145
BSNT_01116___ 146 GCGACCACGCAGGGCTTGTCTCG-TTTGCAAAAGAAAACCAGGTCGGCCT 194
|.||.||.| |||..||...||| |||||||||||.||..|..|||||.|
BPUM_0607___p 146 GGGATCATG-AGGCATTAATTCGTTTTGCAAAAGACAATAAAATCGGCTT 194
BSNT_01116___ 195 AACCATTGTCGGCCCTGAGGTTCCTTTAATTGAAGGTCTGGTGGATGAAT 244
|||.||||||||.||.||||||||||||||||.||||.|.||.||||.||
BPUM_0607___p 195 AACGATTGTCGGTCCAGAGGTTCCTTTAATTGCAGGTGTCGTCGATGCAT 244
BSNT_01116___ 245 TTGAAAAAGCGGGTCTGCGCGTGTTCGGCCCG---TCAAAAGCCGCGGCG 291
|||||.|.||.|||||....||.||.||.||| .||||||||||||
BPUM_0607___p 245 TTGAAGAGGCAGGTCTAAAGGTATTTGGACCGAATGCAAAAGCCGCGG-- 292
BSNT_01116___ 292 ATCATCGAAGG----AAGCAAACAGTTCGCTAAGGATTTAATGAAGAAAT 337
|.||.||||| |||.|| ||.||.||.||.||||||||.||.|
BPUM_0607___p 293 -TTATTGAAGGCTCAAAGGAA----TTTGCAAAAGACTTAATGAAAAACT 337
BSNT_01116___ 338 ACGACATTCCGACTGCAGAATACGACACGTTTACATCCTTTGATGAGGCG 387
||||.||.|||||.||.|..||.|.|||.||||||||.|||||.||.|||
BPUM_0607___p 338 ACGATATCCCGACCGCCGCTTATGCCACTTTTACATCGTTTGAAGAAGCG 387
BSNT_01116___ 388 AAGGCATATGTGCTGGAAAAAGGTGCTCCGATTGTGATCAAAGCAGATGG 437
||||||||||||...|||||.|||||.||||||||.||.|||||||||||
BPUM_0607___p 388 AAGGCATATGTGGAAGAAAAGGGTGCACCGATTGTCATTAAAGCAGATGG 437
BSNT_01116___ 438 ACTTGCAGCTGGAAAAGGCGTTACTGTGGCTATGACAGAGGAAGAAGCAA 487
.||.|||||.|||||||||||.||.||.||.||||||...||.||.||.|
BPUM_0607___p 438 TCTCGCAGCAGGAAAAGGCGTGACCGTTGCGATGACACTTGATGAGGCGA 487
BSNT_01116___ 488 TTGCA--TGTTTGCATGACTTTCTTGAAGATGAAAAGTTCGGTGATGCGA 535
| || ||||||||.||||||.|.||.|||||||||||.||.|||||.|
BPUM_0607___p 488 T--CAACTGTTTGCACGACTTTTTAGAGGATGAAAAGTTTGGCGATGCAA 535
BSNT_01116___ 536 GCGCGTCCGTTGTCATTGAAGAATATCTTTCTGGTGAAGAATTTTCTCTG 585
|.||.||.||.|||||.||.||||.|.|..|.||.||.||||||||.|||
BPUM_0607___p 536 GTGCTTCTGTCGTCATCGAGGAATTTTTAACAGGCGAGGAATTTTCACTG 585
BSNT_01116___ 586 ATGGCCTTTGTCAAAGGGGAAAAAGTGTATCCAATGGTGATTGCCCAGGA 635
|||||||||||.||.||.||.||.|||||.|||||||||||.||.||.||
BPUM_0607___p 586 ATGGCCTTTGTTAATGGAGATAAGGTGTACCCAATGGTGATCGCGCAAGA 635
BSNT_01116___ 636 TCACAAGCGTGCGTTTGACGGAGACAAAGGCCCGAATACGGGCGGAATGG 685
||||||.||.||.|||||.|..||||||||.||||||||.||||||||||
BPUM_0607___p 636 TCACAAACGAGCATTTGAAGATGACAAAGGACCGAATACCGGCGGAATGG 685
BSNT_01116___ 686 GCGCTTACTCTCCAGTTCCGCAAATTTCGGATGAAACGGTCCGCCATGCT 735
|||||||.||.||||||||.||||||||.||||||...||||...|.||.
BPUM_0607___p 686 GCGCTTATTCACCAGTTCCACAAATTTCAGATGAAGTTGTCCAAAAAGCG 735
BSNT_01116___ 736 GTAGAAACGA--TCGTGAAGCCGGC----CGCAAAAGCAATGGTACAAGA 779
||.||| || |.|||||.||||| ||| ||||||||.||.||
BPUM_0607___p 736 GTGGAA--GATGTTGTGAAACCGGCGGCTCGC----GCAATGGTGCAGGA 779
BSNT_01116___ 780 AGGCCGTTCCTTCACTGGCGTTTTGTACGCTGGATTGATGCTTACTGAAA 829
||..|||.|.||.||.|||.||||.||.||.||.||.|||||.||...|.
BPUM_0607___p 780 AGAGCGTCCGTTTACAGGCATTTTATATGCAGGCTTAATGCTGACGCCAG 829
BSNT_01116___ 830 ACGGCTCGAAGGTCATTGAATTTAATGCCCGTTTCGGCGATCCGGAAACA 879
|.|||||.||.||||||||.||.||.||.||.||.||.||.||.|||||.
BPUM_0607___p 830 AAGGCTCAAAAGTCATTGAGTTCAACGCACGCTTTGGTGACCCTGAAACG 879
BSNT_01116___ 880 CAGGTCGTGCTTCCGCGCATGGAATCTGATCTGGTGCAGGTGCTT-CTTG 928
|||||.||.||.||.||..|.|||||.|||||.||.||.|| ||| ||.|
BPUM_0607___p 880 CAGGTGGTTCTCCCTCGTCTTGAATCAGATCTAGTCCAAGT-CTTCCTCG 928
BSNT_01116___ 929 ATCTTTTAGATGATAAGGAAGTTGACTT-AAGATGGAAGGATACCGCGGC 977
|..||.|.||.|..||.||.||.||||| .|| |||||.||.||.||.||
BPUM_0607___p 929 ACATTCTGGACGGAAAAGATGTGGACTTGCAG-TGGAAAGACACTGCCGC 977
BSNT_01116___ 978 AGTGAGTGTTGTGCTTGCATCAGAAGGGTATCCGGAAAGCTACGCAAAAG 1027
.||.|||||.||.|||||.||||||||.||.|||||...|||||||||||
BPUM_0607___p 978 TGTCAGTGTCGTACTTGCTTCAGAAGGATACCCGGAGGACTACGCAAAAG 1027
BSNT_01116___ 1028 GCACGCCGATCGGCAGCCTTGCTGCGGAAA---------CTGAGCAGGTC 1068
||||||||||||| ||||..|.||| ||| |.|||
BPUM_0607___p 1028 GCACGCCGATCGG------TGCTTTGCAAACAACGGTGTCTG---ATGTC 1068
BSNT_01116___ 1069 GTGGTCTTCCATGCCGGAACGAAAGCAGAAGGCGGAGAGTTTGTTACAAA 1118
|||..||||||.||.|||||.|||..||||...|...|.||.||.|||||
BPUM_0607___p 1069 GTGACCTTCCACGCAGGAACAAAAAAAGAAAATGACCAATTCGTCACAAA 1118
BSNT_01116___ 1119 CGGGGGGCGCGTCGCCAATGTGACAGCTTTTGATGAATCGTTTGAAGCGG 1168
.||.||.||.||.||.||||||||.||.|||||.||..|.||||||||||
BPUM_0607___p 1119 TGGCGGACGTGTAGCAAATGTGACGGCGTTTGACGACACATTTGAAGCGG 1168
BSNT_01116___ 1169 CTAGAGAC-CGAGTGTACAAAGCGGTTGATGAAAT-ATTCAAACCGGGAC 1216
|.||| || .|||||||..||||||||||.||||| |||| |.||.||..
BPUM_0607___p 1169 CAAGA-ACAAGAGTGTATGAAGCGGTTGAAGAAATCATTC-AGCCCGGTT 1216
BSNT_01116___ 1217 TCTTTTTCAGAAAAGATATTGGGGCACGCGCTTTAAAGGCTGCCCAAAAA 1266
|.||||.|.|....||.|||||.||.||.||..|.||.|||||....|||
BPUM_0607___p 1217 TATTTTACCGCCGTGACATTGGCGCCCGTGCGCTGAAAGCTGCGGGGAAA 1266
BSNT_01116___ 1267 ------TAA 1269
|||
BPUM_0607___p 1267 TCCGTTTAA 1275
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