Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01114 and BPUM_0606
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:45
# Commandline: needle
# -asequence dna-align/BSNT_01114___purH.1.24716.seq
# -bsequence dna-align/BPUM_0606___purH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01114___purH-BPUM_0606___purH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01114___purH-BPUM_0606___purH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01114___purH
# 2: BPUM_0606___purH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1555
# Identity: 1197/1555 (77.0%)
# Similarity: 1197/1555 (77.0%)
# Gaps: 32/1555 ( 2.1%)
# Score: 4541.5
#
#
#=======================================
BSNT_01114___ 1 ATGACCATTAAACGTGCGTTAATCAGTGTTTCAGATAAAACAAATCTCGT 50
|||||.||.|||||.||.||||||||||||||.||||||||.|||||.||
BPUM_0606___p 1 ATGACGATCAAACGCGCATTAATCAGTGTTTCCGATAAAACGAATCTTGT 50
BSNT_01114___ 51 TCCTTTCGTAAAAGAACTGACAGAGCTTGGCGTTGAAGTCATCTCCACAG 100
.|||||.||.||||||.|.|||||.||||||||||||||.||.||.||.|
BPUM_0606___p 51 ACCTTTTGTGAAAGAATTAACAGAACTTGGCGTTGAAGTGATTTCAACTG 100
BSNT_01114___ 101 GCGGAACGAAAAAGCTTCTTCAAGAAAACGGTGTGGATGTGATCGGAATT 150
|.||.||..|.||||||||||||||.||.||..|.|||||.||.||.|||
BPUM_0606___p 101 GAGGTACACATAAGCTTCTTCAAGAGAATGGCATTGATGTCATTGGGATT 150
BSNT_01114___ 151 TCGGAAGTGACAGGCTTCCCTGAAATTATGGACGGCCGGTTAAAAACCCT 200
||.|||||.||.||.|||||||||||.||||||||.||..|.|||||.||
BPUM_0606___p 151 TCTGAAGTCACTGGATTCCCTGAAATCATGGACGGACGACTCAAAACGCT 200
BSNT_01114___ 201 TCACCCGAATATTCACGGCGGTCTTCTGGCGGTTCGCGGCAATGAAGAGC 250
|||||||||.|||||.||.||..|..||||.||..|.|..||.||.||.|
BPUM_0606___p 201 TCACCCGAACATTCATGGTGGATTATTGGCAGTGAGAGAAAACGATGAAC 250
BSNT_01114___ 251 ATATGGCGCAGATCAATAAACACGGGATTCAGCCGATTGACCTCGTTGTC 300
|||||||.|||||..|.||.||.||.||.|||||||||||.||.||||||
BPUM_0606___p 251 ATATGGCACAGATTGAAAAGCATGGCATCCAGCCGATTGATCTTGTTGTC 300
BSNT_01114___ 301 GTCAACCTCTATCCATTTAAAGAAACGATTTCTAAAGAAGACGTCACGTA 350
||.||.||||||||.||.|||||.||.||.||.|||||.||.||.|||||
BPUM_0606___p 301 GTGAATCTCTATCCTTTCAAAGAGACAATCTCAAAAGACGATGTAACGTA 350
BSNT_01114___ 351 TGAAGAAGCAATCGAAAATATCGACATCGGCGGACCGGGCATGCTGCGTG 400
|||||||||.||.|||||.||.||.||.|||||||||||.|||||.||||
BPUM_0606___p 351 TGAAGAAGCGATTGAAAACATTGATATTGGCGGACCGGGAATGCTTCGTG 400
BSNT_01114___ 401 CGGCATCAAAGAACCATCAGGATGTAACGGTTATCGTCGATCCGGCCGAT 450
||||||||||.|||||.||.||.||.||.||.||.||||||||....|||
BPUM_0606___p 401 CGGCATCAAAAAACCACCAAGACGTCACAGTCATTGTCGATCCTCGTGAT 450
BSNT_01114___ 451 TA-----CAGCCCAGTGCTGAGTCAAATCAAAGAAGAAGGCAGCGTATCT 495
|| |||.| |.|.|| ||||||| ||||||||.|||||||.
BPUM_0606___p 451 TATGATTCAGTC----GTTCAG-CAAATCA---AAGAAGGCGGCGTATCA 492
BSNT_01114___ 496 CTTCAGAAAAAACGCGAGCTCGCGGCAAAAGTATTCCGTCATACTGCGGC 545
|||.||||||||||.|||||.||||||||.||||||||||||||.||.||
BPUM_0606___p 493 CTTGAGAAAAAACGTGAGCTTGCGGCAAAGGTATTCCGTCATACAGCTGC 542
BSNT_01114___ 546 ATATGATGCACTGATCGCTGACTATCTGACAAATGTTGTCGGTGAAAAAG 595
.||.|||||.||.||.||.||.|||.|.||.||..||||.||.||||.||
BPUM_0606___p 543 TTACGATGCCCTCATTGCAGATTATTTAACGAACTTTGTTGGAGAAACAG 592
BSNT_01114___ 596 AACCAGAGCAATTCACTGTTACATTTGAGAAAAAACAATCGCTTCGCTAT 645
|.||||||||.||||||||.||.|||||||||||||||||.|||||.|||
BPUM_0606___p 593 AGCCAGAGCAGTTCACTGTCACGTTTGAGAAAAAACAATCCCTTCGTTAT 642
BSNT_01114___ 646 GGAGAAAACCCGCATCAGGAAGCAACTTTCTATCAAACAGCTCTTCCTGT 695
||||||||||||||.||.|..||||||||||||.|||..||||||||...
BPUM_0606___p 643 GGAGAAAACCCGCACCAAGCGGCAACTTTCTATGAAAATGCTCTTCCAAG 692
BSNT_01114___ 696 CAAAGGCTCCATTGC----GCAA-GCAGAACAGCTT-CACGGAAAAGAGC 739
||||||.||..|.|| |||| ||| .|| |||||||||||.|
BPUM_0606___p 693 CAAAGGATCTTTAGCTACTGCAACGCA------ATTACACGGAAAAGAAC 736
BSNT_01114___ 740 TTTCTTACAACAACATGAAAGACGCGGATGCGGCAGTTCAAATCGTTCGT 789
||||||||||||||||.|||||.||.|||||.||..||||||||||.|||
BPUM_0606___p 737 TTTCTTACAACAACATCAAAGATGCAGATGCAGCTCTTCAAATCGTACGT 786
BSNT_01114___ 790 GAATTCACTGAGCCGGCTGCGGTTGCCGTGAAGCATATGAACCCGTGCGG 839
||||||.|.|||||.||.||.||.||.||||||||||||||.||.|||||
BPUM_0606___p 787 GAATTCTCGGAGCCAGCGGCTGTCGCTGTGAAGCATATGAATCCATGCGG 836
BSNT_01114___ 840 CGTGGGAACAGGAAAAACGATCGCCGAAGCGTTTGACAGAGCGTTTGAAG 889
.||.||.||||||.|||||||.||.||||||||||||.|.||.||..|||
BPUM_0606___p 837 TGTTGGTACAGGAGAAACGATTGCAGAAGCGTTTGACCGTGCATTCAAAG 886
BSNT_01114___ 890 CGGATAAAACATCTATCTTCGGCGGCATTATCGCGTTGAACCGTGAAGTG 939
|.|||.||||.|||||.||.|||||||||.|.|||.|.|||||||||||.
BPUM_0606___p 887 CAGATGAAACTTCTATTTTTGGCGGCATTGTGGCGCTTAACCGTGAAGTA 936
BSNT_01114___ 940 GACAAGACAACTGCCGAAGCGCTTCATAACATTTTCTTAGAAATCATCAT 989
||||||..|||.||.||.|..||.||||..||||||||||||||..||||
BPUM_0606___p 937 GACAAGCAAACGGCTGAGGTACTCCATACGATTTTCTTAGAAATTGTCAT 986
BSNT_01114___ 990 TGCGCCTTCATTCAGCCAAGAAGCGCTCGACGTCCTGACTGCGAAGAAAA 1039
.||.||.||.||.|||||||||||.||.|||||..|.||.|||||.||.|
BPUM_0606___p 987 CGCTCCATCGTTTAGCCAAGAAGCACTTGACGTGTTAACAGCGAAAAAGA 1036
BSNT_01114___ 1040 ATCTCCGCCTGCTGACGCTTGACGTATCTGCTGCTGTT---CAAAAGGAA 1086
|.||.||.||..|.||..|.||.|||...||.|.|.|| .||||.|||
BPUM_0606___p 1037 ACCTTCGTCTATTAACATTAGATGTAGAAGCGGATCTTGGGAAAAAAGAA 1086
BSNT_01114___ 1087 AAACAGCTGACATCCGTTCAAGGCGGGCT-ATTGATTCAAGATTTAGATA 1135
||.|||||.|||...|||||.|||||.|| .||| |.||.||..|.||||
BPUM_0606___p 1087 AAGCAGCTAACAAGTGTTCATGGCGGACTGCTTG-TGCAGGACATTGATA 1135
BSNT_01114___ 1136 TGCACGGCTTTGATGATGCTGAGATTAGCATTCCGACAAAAAGAGAGCCG 1185
.|.|.|||||.||.||.||...|||....|||||.||.||||||||.||.
BPUM_0606___p 1136 CGTATGGCTTAGAGGAAGCAACGATCTCTATTCCTACGAAAAGAGAACCT 1185
BSNT_01114___ 1186 AACGAGCAAGAGTGGGAAGACTTGAAGCTTGCTTGGAAAGTCGTGAAGCA 1235
|..||..|.||.|||.|||||||.||||||||.|||||||||||.|||||
BPUM_0606___p 1186 ACAGAAGACGAATGGAAAGACTTAAAGCTTGCATGGAAAGTCGTCAAGCA 1235
BSNT_01114___ 1236 TGTGAAATCAAATGCGATTGTTCTCGCGAAGGA-CAACATGACAGTCGGC 1284
|||||||||||||||.|||||.||.|||||.|| ||| |||||||..||.
BPUM_0606___p 1236 TGTGAAATCAAATGCCATTGTCCTTGCGAAAGATCAA-ATGACAGCAGGG 1284
BSNT_01114___ 1285 GTGGGAGCAGGCCAAATGAACCGCGTCGGATCGGCAAAAATCGCAATCGA 1334
.|.||.||.||.||||||||||||||.||.||.|||||.||.||.||.||
BPUM_0606___p 1285 ATTGGCGCTGGTCAAATGAACCGCGTGGGCTCAGCAAACATTGCGATTGA 1334
BSNT_01114___ 1335 GCAAGCAGGGGAAAAAGCGAAAGGCAGTGCGCTCGGATCTGACGCATTTT 1384
|||||||||.||||||||||||||.||.||.||.||.|||||.||.||.|
BPUM_0606___p 1335 GCAAGCAGGTGAAAAAGCGAAAGGAAGCGCACTAGGCTCTGATGCGTTCT 1384
BSNT_01114___ 1385 TCCCAATGCCGGATACTGTTGAAGAAGCAGCAAAAGCGGGCGTTACGGCT 1434
||||.|||...|||||.||.||||..||.|||||.||.|||||.||.||.
BPUM_0606___p 1385 TCCCGATGGGCGATACAGTGGAAGCTGCTGCAAAGGCAGGCGTCACAGCA 1434
BSNT_01114___ 1435 ATCATTCAGCCGGGGGGATCTGTGCGTGACGAGGATTCCATCAAAAAAGC 1484
|||||.|||||.||.||.||..|.|||||.||.||.||.|||.|||||||
BPUM_0606___p 1435 ATCATCCAGCCAGGTGGTTCCATTCGTGATGAAGAATCAATCCAAAAAGC 1484
BSNT_01114___ 1485 GGATGAATACGGCATTGCCATGGTATTCACCGGCATCAGACACTTCAAAC 1534
.||||||||||||||.||||||||.|||||.|||.|.|||||.|||||||
BPUM_0606___p 1485 AGATGAATACGGCATCGCCATGGTCTTCACTGGCGTTAGACATTTCAAAC 1534
BSNT_01114___ 1535 ATTAA 1539
|||||
BPUM_0606___p 1535 ATTAA 1539
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