Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01112 and BPUM_0605

See Amino acid alignment / Visit BSNT_01112 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:44
# Commandline: needle
#    -asequence dna-align/BSNT_01112___purN.1.24716.seq
#    -bsequence dna-align/BPUM_0605___purN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01112___purN-BPUM_0605___purN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01112___purN-BPUM_0605___purN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01112___purN
# 2: BPUM_0605___purN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 605
# Identity:     391/605 (64.6%)
# Similarity:   391/605 (64.6%)
# Gaps:          52/605 ( 8.6%)
# Score: 1140.0
# 
#
#=======================================

BSNT_01112___      1 ATGAAAAAGTTTGCGGTATTTGCATCAGGAAACGGTTCAAACTTCGAAGC     50
                     |||||.|||||||||.|.||.||.||.||||.|||..|.|||||..||||
BPUM_0605___p      1 ATGAAGAAGTTTGCGATCTTCGCCTCTGGAAGCGGGACGAACTTTCAAGC     50

BSNT_01112___     51 CATCGT-CACGCGTTTGAAGGAGGAGAACTGGGATGCGTCAGCAGCGCTC     99
                     |||..| .|..||||..|||.||.||.| |||.|.||...|||.||..|.
BPUM_0605___p     51 CATTATAGATACGTTAAAAGAAGAAGGA-TGGCAGGCTGAAGCCGCCATT     99

BSNT_01112___    100 CTCGTTTGCGACAAACCGCAGGCGAAAGTCATCGAACGGGC---GGAAGC    146
                     .|..||||.||.||||||...||.||.||..|.||.||.||   |.||| 
BPUM_0605___p    100 GTGATTTGTGATAAACCGGGTGCAAAGGTGCTGGAGCGTGCTGAGAAAG-    148

BSNT_01112___    147 ATTCCA---CATTCCATCCTTCTCATTTGAGCCC--AAGTCTTATGAAAA    191
                          |   ||||||.||||| |..|||.|.|||  ||| |||.|...||
BPUM_0605___p    149 -----AGGGCATTCCCTCCTT-TGCTTTTACCCCGAAAG-CTTTTCCGAA    191

BSNT_01112___    192 CAAGGCCGCATTTGAACAAGCCATCATTGAACAGCTTCGTCTTCACGAGG    241
                     .||.|||||.|||||||||.|||||||.|||||.||..|.|||||.||.|
BPUM_0605___p    192 TAAAGCCGCTTTTGAACAAACCATCATCGAACAACTGAGGCTTCATGAAG    241

BSNT_01112___    242 TTGAATTGATTGTTCTTGCCGGCTATATGAGGCTGATCGGTGATACGCTC    291
                     |.||.|.|.||.|.|||||.||.||.|||||.||||||||....||..|.
BPUM_0605___p    242 TAGAGTGGGTTTTCCTTGCTGGGTACATGAGACTGATCGGCCCGACATTA    291

BSNT_01112___    292 CTTCAAGCATATGGAGGAAAAATCATTAACATTCACCCGTCGCTT-CTTC    340
                     |||..|||||||..|||.||||||.|.||.||.|||||.|| ||| ||.|
BPUM_0605___p    292 CTTGGAGCATATAAAGGGAAAATCGTGAATATCCACCCATC-CTTGCTGC    340

BSNT_01112___    341 CGGCGTTTCCTGGAATCGACGCAGTCGGACAGGCGTTCCGGGCGGGTGTG    390
                     |.||.||.||.||..|.||.||..|||||||.||.|..|..||.||.||.
BPUM_0605___p    341 CAGCTTTCCCAGGTCTTGATGCCATCGGACAAGCCTATCAAGCAGGCGTC    390

BSNT_01112___    391 AAGGTAGCAGGAATCACTGTGCATTATGTCGATGAAGGAATGGATACAGG    440
                     ||.||.|||||.||||||||.||.|.|||.||||||||.|||||||||||
BPUM_0605___p    391 AAAGTGGCAGGCATCACTGTCCACTTTGTTGATGAAGGGATGGATACAGG    440

BSNT_01112___    441 TCCGATCATCGCTCAAAAGGCAATCGAAATTGATGAACATGATACA--TT    488
                     .|||||.||.|..|||...||.|||.|.|||||..||...|| |.|  ||
BPUM_0605___p    441 CCCGATTATTGACCAAGCCGCGATCTATATTGACCAAGGCGA-AGAGCTT    489

BSNT_01112___    489 GGAAACAATCGAACAGCGGATTCACAAGCTTGAGCATAAATGGTATCCGA    538
                      |||.|.||.|||.|..|.||.||..|.||.||.||||.|...|||||.|
BPUM_0605___p    490 -GAATCGATTGAAAAAAGAATGCATGAACTAGAACATACACTATATCCAA    538

BSNT_01112___    539 GTGTGATTAAA-CAGCTATTAGGATTA----AATAACAGAGGTGAAAAGG    583
                     ..|||||.||| || ||.||||.||||    ||                 
BPUM_0605___p    539 AAGTGATCAAATCA-CTTTTAGAATTATCTTAA-----------------    570

BSNT_01112___    584 CATGA    588
                          
BPUM_0605___p    570 -----    570


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