Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01111 and BPUM_0604
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:44
# Commandline: needle
# -asequence dna-align/BSNT_01111___purM.1.24716.seq
# -bsequence dna-align/BPUM_0604___purM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01111___purM-BPUM_0604___purM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01111___purM-BPUM_0604___purM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01111___purM
# 2: BPUM_0604___purM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1064
# Identity: 814/1064 (76.5%)
# Similarity: 814/1064 (76.5%)
# Gaps: 46/1064 ( 4.3%)
# Score: 3022.0
#
#
#=======================================
BSNT_01111___ 1 ATGTCTGAAGCATATAAAAACGCAGGAGTTGACATCGAAGCCGGATATGA 50
|||||.|||||||||||||||||.||.||.|||||||||||.||.||.||
BPUM_0604___p 1 ATGTCAGAAGCATATAAAAACGCCGGTGTCGACATCGAAGCAGGGTACGA 50
BSNT_01111___ 51 AGCCGTAAAACGAATGAAAAAACACGTGGAGCGCACGAAACG-GCTTGGC 99
||||||.|||||||||||||.||||||.||.||.||.||||| || .||.
BPUM_0604___p 51 AGCCGTCAAACGAATGAAAACACACGTTGAACGTACAAAACGAGC-AGGA 99
BSNT_01111___ 100 GTTATGG--GCAGCCTTGGCGGTTTTGGCGGCATGTTTGACCTGTCTGAG 147
||||||| ||| ||.||.||.||||||||.|||||.||.||.||||||
BPUM_0604___p 100 GTTATGGGTGCA--CTAGGTGGATTTGGCGGTATGTTCGATCTATCTGAG 147
BSNT_01111___ 148 CTTTCTTATCAAAAA-CCAGTTCTCATTTCGGGAACGGACGGTGTCGGAA 196
||..|.|| |||||| ||.|||||..||||.|||||.||.||||||||||
BPUM_0604___p 148 CTGCCATA-CAAAAAGCCCGTTCTTGTTTCAGGAACAGATGGTGTCGGAA 196
BSNT_01111___ 197 CAAAATTAAAGCTCGCTTTTTCCATGGATAAGCATGACACGATTGGCGTG 246
|.|||||||||||.||.||||..||||||||.||.||.|||||.|||||.
BPUM_0604___p 197 CGAAATTAAAGCTTGCCTTTTTAATGGATAAACACGATACGATCGGCGTC 246
BSNT_01111___ 247 GACGCTGTTGCAATGTGTGTCAATGACGTGCTGGCACAAGGTGCAGAGCC 296
||.||.||.||.|||||||||||.||.|||||.||||||||.|||||.||
BPUM_0604___p 247 GATGCCGTGGCTATGTGTGTCAACGATGTGCTTGCACAAGGGGCAGAACC 296
BSNT_01111___ 297 GCTGTTTTTCCTCGATTATTTAGCGGTCGGCAAAGCGGACCCAGTGAAAA 346
|||.||||||.|.|||||.|||||.||.||.|||||.||.||.||.||||
BPUM_0604___p 297 GCTCTTTTTCTTAGATTACTTAGCCGTTGGAAAAGCAGATCCGGTAAAAA 346
BSNT_01111___ 347 TTGAACAGATTGTACAAGGTGTTGCGGAAGGCTGTGAGCAGTCAGGTTCA 396
|||||...|||||..|||||||.||.||.||.|||||||||||.||||||
BPUM_0604___p 347 TTGAATCCATTGTTAAAGGTGTGGCTGACGGATGTGAGCAGTCTGGTTCA 396
BSNT_01111___ 397 GC-CTTAGTCGGCGGTGAAACGGCTGAAATGCCGGGACTCTATACAGCTG 445
|| ||| |||||.|||||.||.||.||||||||.||.||.||.||||..|
BPUM_0604___p 397 GCACTT-GTCGGTGGTGAGACAGCCGAAATGCCAGGTCTTTACACAGAAG 445
BSNT_01111___ 446 ATGAATACGATATTGCCGGTTTCTCAGTCGGAGTGGCAGAAAAGGACGAA 495
|.|||||.||||||||.|||||.|||||.||.||.|..|||||.||||||
BPUM_0604___p 446 AAGAATATGATATTGCTGGTTTTTCAGTAGGTGTCGTTGAAAAAGACGAA 495
BSNT_01111___ 496 ATCGTCACTGGAGAAAACATCAAAGAGGGTCATCTTTTGATCGGCCTCAG 545
|||||.||.|||.|.|.||||||||||||.|||.|..||||.||.|||||
BPUM_0604___p 496 ATCGTGACAGGAAACAGCATCAAAGAGGGGCATTTGCTGATTGGACTCAG 545
BSNT_01111___ 546 CTCCAGCGGTCTTCACAGCAACGGATTTTCCCTTGTCAGAAAAGTGCTTC 595
|||.|||||..||||.|||||.||||.|||.||.||..|.|||||..|.|
BPUM_0604___p 546 CTCAAGCGGAATTCATAGCAATGGATATTCTCTCGTTCGTAAAGTTTTGC 595
BSNT_01111___ 596 TGGATGATGCGGAGCTTGACCTCGATACAACATATGAGCCGTTTGAACGC 645
||||.||.||.|..|||||..|..||..|||.|||||.||.|||.||.|.
BPUM_0604___p 596 TGGAAGACGCTGGTCTTGATTTGCATCAAACGTATGAACCTTTTAAAAGA 645
BSNT_01111___ 646 CCGCTTGGCGAGGAGTTGCTTGAACCGACAAGGATTTACGTGAAGCCTGT 695
|||||.||.||.|||.|.||||||||.||||..|||||.|||||||||||
BPUM_0604___p 646 CCGCTCGGTGAAGAGCTTCTTGAACCAACAAAAATTTATGTGAAGCCTGT 695
BSNT_01111___ 696 GCTTGCCGCGGTC--------AAAAG-CGGAAAAATCGACGGCATGGCGC 736
.| || ||||| |||.|||.|.|||||||||||.|
BPUM_0604___p 696 TC---------TCAAACAAGTAAAAGCCGGCAAAGTGGACGGCATGGCAC 736
BSNT_01111___ 737 ACGTGACAGGCGGAGGATTTATTGAAAATATTCCGCGTATGCTTCCGGAA 786
|.||||||||.||.||.||||||||.|||.|.||.||||||||.||.|||
BPUM_0604___p 737 ATGTGACAGGTGGCGGTTTTATTGAGAATTTACCACGTATGCTGCCTGAA 786
BSNT_01111___ 787 GG-CTTAAGTGCG--GAAATTGATCATGGCTCATGGCCGATCCCGCCAAT 833
|| ||| .||| ||.||||||.|.|||||||||||..|.||.||.||
BPUM_0604___p 787 GGTCTT---GGCGTTGAGATTGATAACGGCTCATGGCCAGTACCACCCAT 833
BSNT_01111___ 834 TTT-TTCTTTCTTGCAAGAGTATGGCAAGCTAAAGGAAGAAGACATGTTC 882
||| |.||||.|| |||||..|.||..||.||||||.||||||.||||||
BPUM_0604___p 834 TTTCTCCTTTATT-CAAGAAAAAGGTCAGTTAAAGGCAGAAGAGATGTTC 882
BSNT_01111___ 883 AACGTCTTTAATATGGGTATCGGTTTTGTTTTGGCTGTCAAAGAAGAGCA 932
|||||.||||||||||||||.||.|||||..|.|||||.|||||.||..|
BPUM_0604___p 883 AACGTGTTTAATATGGGTATTGGCTTTGTCCTAGCTGTAAAAGAGGACGA 932
BSNT_01111___ 933 T-TTGACAGATGTGATCGGAACGCTTGA--AAGCCATGGAGAAAAAGCCT 979
| ||| ..||||||||..||..|||||| ||| |||||||.|||||.|
BPUM_0604___p 933 TCTTG-TGGATGTGATTAGAGAGCTTGAACAAG--ATGGAGAGAAAGCAT 979
BSNT_01111___ 980 ATTTAATCGGGCGTGTGAAAAAAGGTGAAGGCGTCACATTCGGCGGTGCG 1029
.|.|.|||||.|||||..|||||||.|||||.||||||||||||||| |
BPUM_0604___p 980 TTCTCATCGGACGTGTTCAAAAAGGAGAAGGTGTCACATTCGGCGGT--G 1027
BSNT_01111___ 1030 GCA--CTTTCATGA 1041
|.| ||.||||||
BPUM_0604___p 1028 GAAGCCTCTCATGA 1041
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