Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01109 and BPUM_0603
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:44
# Commandline: needle
# -asequence dna-align/BSNT_01109___purF.1.24716.seq
# -bsequence dna-align/BPUM_0603___purF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01109___purF-BPUM_0603___purF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01109___purF-BPUM_0603___purF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01109___purF
# 2: BPUM_0603___purF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1438
# Identity: 1127/1438 (78.4%)
# Similarity: 1127/1438 (78.4%)
# Gaps: 14/1438 ( 1.0%)
# Score: 4364.0
#
#
#=======================================
BSNT_01109___ 1 ATGCTTGCTGAAATCAAAGGCTTAAATGAAGAATGCGGCGTTTTTGGGAT 50
||||||||||||||||.|||||||||||||||.||.||.||.||||||.|
BPUM_0603___p 1 ATGCTTGCTGAAATCAGAGGCTTAAATGAAGAGTGTGGTGTCTTTGGGGT 50
BSNT_01109___ 51 TTGGGGACATGAAGAAGCCCCGCAAATCACGTATTACGGTCTCCACAGCC 100
|||||||||.|||||||||||.||||||||.||||||||..|.||.||||
BPUM_0603___p 51 TTGGGGACACGAAGAAGCCCCACAAATCACATATTACGGATTGCATAGCC 100
BSNT_01109___ 101 TTCAGCACCGAGGACAGGAGGGTGCGGGCATCGTAGCGACTGATGGTGAA 150
||||||||||||||||.||.||||||||||||.|.||.||.||||||||.
BPUM_0603___p 101 TTCAGCACCGAGGACAAGAAGGTGCGGGCATCATTGCAACAGATGGTGAG 150
BSNT_01109___ 151 AAGCTGACGGCTCACAAAGGCCAAGGTCTGATCACTGAAGTATTTCAAAA 200
||.||||||.|.||||||||||..||.|||||.||.|||||.||||||||
BPUM_0603___p 151 AACCTGACGTCACACAAAGGCCTTGGACTGATTACGGAAGTCTTTCAAAA 200
BSNT_01109___ 201 CGGCGAACTCAGCAAAG----TAAAGGGAAAAGGCGCTATCGGGCACGTT 246
|||.||.|| |||| |.||.||||||||.||.||.||.||||||
BPUM_0603___p 201 CGGTGAGCT----AAAGGATTTGAAAGGAAAAGGTGCGATTGGACACGTT 246
BSNT_01109___ 247 CGGTACGCAACGGCTGGAGGCGGCGGATACGAAAATGTTCAGCCGCTCCT 296
.||||.||.||.||.||.||.|||||.|..||||||||.|||||.|||.|
BPUM_0603___p 247 AGGTATGCGACAGCAGGCGGAGGCGGCTTTGAAAATGTGCAGCCCCTCTT 296
BSNT_01109___ 297 CTTCCGTTCCCAAAACAATGGCAGCCTGGCGCTTGCTCATAACGGAAATC 346
|||||||||.|||||||||||||||||.||.|||||||||||.||||| |
BPUM_0603___p 297 CTTCCGTTCGCAAAACAATGGCAGCCTTGCCCTTGCTCATAATGGAAA-C 345
BSNT_01109___ 347 TT-GTCAACGCCACTCAGCTGAAGCAGCAGCTCGAAAATCAAGGGAGCAT 395
|| ||.||.||.||.|||.|.|||||||||||.|||||.||||||||.||
BPUM_0603___p 346 TTAGTGAATGCAACACAGTTAAAGCAGCAGCTAGAAAACCAAGGGAGTAT 395
BSNT_01109___ 396 CTTTCAAACCTCTTCGGATACAGAGGTTTTGGCTCACCTGATCAAAAGAA 445
.||.||.||||||||.|||||.||.||..|.|||||..|.||.||..|.|
BPUM_0603___p 396 TTTCCAGACCTCTTCTGATACCGAAGTGCTCGCTCATTTAATTAAGCGCA 445
BSNT_01109___ 446 GCGGACACTTCACGCTGAAGGACCAAATTAAAAACTCGCTTTCTATGCTG 495
||||.||..|.....|.||.||.||.||.|||||..|.||.||||||||.
BPUM_0603___p 446 GCGGGCATATGGAATTAAAAGAGCAGATCAAAAATGCACTGTCTATGCTT 495
BSNT_01109___ 496 AAAGGCGCCTACGCGTTCCTGATCATGACCGAAACAGAAATGATTGTCGC 545
||.||.|||||.||.|||.|.||||||||.||.|||||||||||.||.||
BPUM_0603___p 496 AAGGGAGCCTATGCTTTCTTAATCATGACGGAGACAGAAATGATCGTGGC 545
BSNT_01109___ 546 ACTTGATCCAAACGGGCTGA-GACCGCTATCCATCGGCATGATGGGCGAC 594
.||||||||.||| ||||.| |.|||||.||..|.||.|||.|.||.||.
BPUM_0603___p 546 GCTTGATCCGAAC-GGCTTACGTCCGCTTTCACTTGGTATGCTTGGGGAT 594
BSNT_01109___ 595 GCTTATGTGGTCGCATCAGAAACATGCGCATTTGACGTCGTCGGCGCAAC 644
||||||||.|||||.||.||||||||.||||||||.||||||||.||.||
BPUM_0603___p 595 GCTTATGTTGTCGCTTCTGAAACATGTGCATTTGATGTCGTCGGTGCCAC 644
BSNT_01109___ 645 GTACCTTCGTGAGGTAGAGCCGGGAGAAATGCTGATCATTAATGATGAAG 694
|||..|.|||||.||.|||||.||.|||||||||||||||||||||||||
BPUM_0603___p 645 GTATTTACGTGATGTGGAGCCTGGCGAAATGCTGATCATTAATGATGAAG 694
BSNT_01109___ 695 GAATGAAATCAGAGCGTTTTTCCATGAATATCAACCGTTCCATTTGCAGC 744
|..|.|||||.|||||.||.||.|||||.||.|||||...|||.||||||
BPUM_0603___p 695 GCCTCAAATCTGAGCGCTTCTCGATGAACATTAACCGCAGCATGTGCAGC 744
BSNT_01109___ 745 ATGGAGTACATTTATTTCTCCAGACCAGACAGCAATATTGACGGTATTAA 794
|||||.||||||||||||||.|||||.|||||.||||||.|||||||.||
BPUM_0603___p 745 ATGGAATACATTTATTTCTCAAGACCTGACAGTAATATTAACGGTATCAA 794
BSNT_01109___ 795 CGTACACAGTGCCCGTAAAAACCTTGGGAAAATGCTGGCTCAGGAATCCG 844
.||.||.|||||..|.||.|..|||||.||||..||.|||.|.||| .||
BPUM_0603___p 795 TGTGCATAGTGCGAGAAAGAGTCTTGGCAAAAAACTTGCTGAAGAA-GCG 843
BSNT_01109___ 845 CA-GTTGAAGCTGACGTCGTAACCGGGGTTCCGGATTCCAGTATTTCTGC 893
|| ||.|||||.||.||.||.||.||.||.||.|||||||||||.|||||
BPUM_0603___p 844 CATGTCGAAGCAGATGTTGTGACAGGTGTACCAGATTCCAGTATATCTGC 893
BSNT_01109___ 894 GGCGATCGGCTATGCAGAGGCAACAGGCATTCCGTATGAGCTCGGTTTAA 943
.|||||.||.|||||.||.||||||||.||||||||||||||.|||||.|
BPUM_0603___p 894 AGCGATTGGATATGCCGAAGCAACAGGTATTCCGTATGAGCTTGGTTTGA 943
BSNT_01109___ 944 TCAAAAACCGCTATGTCGGCAGAACGTTTATTCAGCCGTCCCAGGCTCTG 993
|.||||||||.|||||||||.|.||||||||.||||||||.||.||..|.
BPUM_0603___p 944 TTAAAAACCGTTATGTCGGCCGGACGTTTATCCAGCCGTCTCAAGCATTA 993
BSNT_01109___ 994 CGTGAGCAAGGCGTCAGAATGAAGCTGTCTGCGGTGCGCGGGGTTGTAGA 1043
||.|||||.|||||..|.||||||||||||||.||.|||||.||.||.||
BPUM_0603___p 994 CGCGAGCAGGGCGTACGGATGAAGCTGTCTGCTGTACGCGGTGTAGTCGA 1043
BSNT_01109___ 1044 AGGCAAACGCGTCGTGATGGTGGATGACTCTATCGTGCGCGGAACAACTA 1093
|||.||.||.||.||||||||||||||.||.|||||.|||||.|||||.|
BPUM_0603___p 1044 AGGAAAGCGTGTTGTGATGGTGGATGATTCCATCGTACGCGGTACAACGA 1093
BSNT_01109___ 1094 GCCGCCGGATTGTCACGATGCTAAGAGAAGCGGGTGCGACAGAGGTGCAT 1143
|||||.|.||||||||||||||.|||||||||||||||||.||.||.||.
BPUM_0603___p 1094 GCCGCAGAATTGTCACGATGCTCAGAGAAGCGGGTGCGACGGAAGTCCAC 1143
BSNT_01109___ 1144 GTGAAAATCAGTTCACCGCCGATCGCTCATCCGTGCTTTTACGGCATTGA 1193
||....||.|||||||||||.|||||.|||||.||.|||||.||.|||||
BPUM_0603___p 1144 GTACGCATTAGTTCACCGCCAATCGCACATCCATGTTTTTATGGAATTGA 1193
BSNT_01109___ 1194 CACTTCCACACATGAAGAACTGATCGCGTCTTCGCATTCTGTTGAAGAAA 1243
.||.||||||||.|||||.|||||.||.|||||.|||||.||.|||||.|
BPUM_0603___p 1194 TACATCCACACACGAAGAGCTGATTGCTTCTTCTCATTCAGTGGAAGAGA 1243
BSNT_01109___ 1244 TCCGTCAGGAAATCGGAGCCGATACCCTCTCATTTTTGAGTGTGGAAGGG 1293
|..|.|||||||||||.||.||..||.|..|||||||...|||.||.||.
BPUM_0603___p 1244 TTAGACAGGAAATCGGTGCAGACTCCATTGCATTTTTATCTGTAGACGGT 1293
BSNT_01109___ 1294 CTGCTGAAAGGCATCGGCAGAAAATACGATGACTCGAATTGCGGACAGTG 1343
.|..||.|.||.||.|||||.||.||.|||||..||.|..||||.|||||
BPUM_0603___p 1294 TTAATGGACGGGATTGGCAGGAAGTATGATGATCCGCAGCGCGGTCAGTG 1343
BSNT_01109___ 1344 TCTCGCTTGCTTTACAGGAAAATATCCGACTGAAATTTACCAGGATACAG 1393
|.|.||.||||||||.||||||||.||.||||||||.||..|.|||||.|
BPUM_0603___p 1344 TTTAGCATGCTTTACTGGAAAATACCCAACTGAAATATATGAAGATACGG 1393
BSNT_01109___ 1394 TGCTTCCTCACGTAAAAGAAGCAGTATTAACCAAATAA 1431
|.|||||.||.||.||.|||.|.||.||.||.||||||
BPUM_0603___p 1394 TTCTTCCGCATGTGAAGGAAACGGTCTTGACGAAATAA 1431
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