Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01108 and BPUM_0602
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:44
# Commandline: needle
# -asequence dna-align/BSNT_01108___purL.1.24716.seq
# -bsequence dna-align/BPUM_0602___purL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01108___purL-BPUM_0602___purL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01108___purL-BPUM_0602___purL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01108___purL
# 2: BPUM_0602___purL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2272
# Identity: 1791/2272 (78.8%)
# Similarity: 1791/2272 (78.8%)
# Gaps: 83/2272 ( 3.7%)
# Score: 6989.0
#
#
#=======================================
BSNT_01108___ 1 ATGTCACTACTGCTTGAACCAAGTAAAGAACAAATAAAAGAAGAGAAACT 50
||||||||||||||||||||||||.|..|.|||||.||||||||||||.|
BPUM_0602___p 1 ATGTCACTACTGCTTGAACCAAGTCACAAGCAAATTAAAGAAGAGAAATT 50
BSNT_01108___ 51 GTATCAGCAAATGGGTGTCAGTGATGATGAGTTTGCATTGATAGAATCCA 100
|||||||||||||||..|.||||||||.||.||.||.||.||.|||||||
BPUM_0602___p 51 GTATCAGCAAATGGGATTGAGTGATGAAGAATTCGCTTTAATCGAATCCA 100
BSNT_01108___ 101 TTCTTGGAAGATTGCCGAACTACACAGAAATCGGAATTTTTTCTGTCATG 150
||.||||.||..||||.|||||||||||.|..||.|||||||||||||||
BPUM_0602___p 101 TTATTGGCAGGCTGCCAAACTACACAGAGACAGGTATTTTTTCTGTCATG 150
BSNT_01108___ 151 TGGTCTGAGCATTGCAGCTATAAAAACTCAAAGCCGATTCTGCGTAAATT 200
|||||.|||||||||||.|||||||||||||||||..||.|..|.|||||
BPUM_0602___p 151 TGGTCAGAGCATTGCAGTTATAAAAACTCAAAGCCTGTTTTAAGCAAATT 200
BSNT_01108___ 201 CCCGACAAGCGGCGAGCGTGTGCTGCAGGGGCCGGGGGAAGGCGCCGGAA 250
||||||||..||.||||.|||.||.||.||.||.|||||||||||.||||
BPUM_0602___p 201 CCCGACAAAAGGAGAGCATGTTCTTCAAGGTCCTGGGGAAGGCGCTGGAA 250
BSNT_01108___ 251 TCGTTGATATCGGTGATAACCAAGCGGTTGTGTTCAAAATTGAATCACAT 300
||||||||||.||.||.||||||||||||||.||.|||||.|||||||||
BPUM_0602___p 251 TCGTTGATATTGGAGACAACCAAGCGGTTGTATTTAAAATCGAATCACAT 300
BSNT_01108___ 301 AACCACCCATCAGCTCTCGAGCCTTACCAAGGCGCTGCGACTGGCGTAGG 350
|||||.|||||.||..|.||.||.||.|||||.||.||.|||||.||.||
BPUM_0602___p 301 AACCATCCATCTGCGATTGAACCGTATCAAGGAGCAGCTACTGGTGTCGG 350
BSNT_01108___ 351 CGGAATTATCCGTGATGTATTCTCAATGGGTGCACGCCCAATCGCTGTAT 400
||||||||||||||||||||||||.||||||||.||.|||||.||||||.
BPUM_0602___p 351 CGGAATTATCCGTGATGTATTCTCCATGGGTGCGCGTCCAATTGCTGTAC 400
BSNT_01108___ 401 TGAACTCTCTTCGATTTGGTGAACTGACTTCACCACGCGTGAAGTACTTG 450
|.|||||||||||.||||||||||||||||||||.|||||||||||||||
BPUM_0602___p 401 TAAACTCTCTTCGTTTTGGTGAACTGACTTCACCGCGCGTGAAGTACTTG 450
BSNT_01108___ 451 TTTGAAGAAGTAGTAGCGGGTATCGCCGGATACGGCAACTGTATCGGCAT 500
||||||||||||||.||.||.|||||.||.||.||.|||||||||||.||
BPUM_0602___p 451 TTTGAAGAAGTAGTGGCAGGGATCGCAGGCTATGGAAACTGTATCGGAAT 500
BSNT_01108___ 501 CCCCACAGTCGGCGGAGAAGTGCAGTTTGA-CAGCAGCTATGAAGGAAAT 549
.||.|||||||||||||||||.||.||||| || .|||||||||||.|||
BPUM_0602___p 501 TCCTACAGTCGGCGGAGAAGTTCATTTTGATCA-AAGCTATGAAGGCAAT 549
BSNT_01108___ 550 CCGCTCGTCAACGCAATGTGCGTCGGTTTAATCAATCATGAAGACATCAA 599
||||||||.||.||.|||||.||.||.||||||||.|||||.||||||||
BPUM_0602___p 550 CCGCTCGTGAATGCGATGTGTGTTGGATTAATCAACCATGAGGACATCAA 599
BSNT_01108___ 600 AAAAGGCCAGGCAAAAGGTGTCGGCAACACAGTAATGTACGTAGGAGCGA 649
||||||.|||||||||||||||||||||||.||.||||||||.||.||.|
BPUM_0602___p 600 AAAAGGGCAGGCAAAAGGTGTCGGCAACACGGTCATGTACGTTGGTGCTA 649
BSNT_01108___ 650 AAACTGGGCGTGACGGCATCCACGGCGCTACGTTTGCTTCTGAAGAAATG 699
||||.||.||||||||.||||||||.||.||.|||||.|||||||||.|.
BPUM_0602___p 650 AAACGGGACGTGACGGTATCCACGGTGCAACATTTGCATCTGAAGAATTT 699
BSNT_01108___ 700 TCAGACTCGTCTGAAGAAAAGCGTTCTGCTGTCCAAGTCGGCGATCCGTT 749
||.||....||.||||||||.|||||.||.||.||||||||||||||.||
BPUM_0602___p 700 TCTGATGAATCAGAAGAAAAACGTTCAGCAGTTCAAGTCGGCGATCCATT 749
BSNT_01108___ 750 TATGGAGAAGCTTTTGCTTGAAGCATGTCTGGAAGTCATCCAATGCGACG 799
||||||.||.||||||||||||||.||.||.|||||||||.||..|||.|
BPUM_0602___p 750 TATGGAAAAACTTTTGCTTGAAGCGTGCCTTGAAGTCATCAAAAACGATG 799
BSNT_01108___ 800 CCTTAGTCGGCATTCAGGATATGGGAGCTGCCGGTTTAACAAGCTCAAGT 849
|..|.||.||.|||||.|||||||||||.||.||.|||||||||||||||
BPUM_0602___p 800 CGCTCGTTGGGATTCAAGATATGGGAGCGGCTGGCTTAACAAGCTCAAGT 849
BSNT_01108___ 850 GCAGAAATGGCAAGTAAAGCCGGTTCTGGCATTGAAATGAACCTTGACCT 899
||.||||||||.||||||||.|||||.||.|||||.|||||.||.|||||
BPUM_0602___p 850 GCGGAAATGGCGAGTAAAGCAGGTTCAGGTATTGAGATGAATCTAGACCT 899
BSNT_01108___ 900 GATTCCTCAGCGCGAAACAGGCATGACCGCGTATGAAATGATGCTTTCTG 949
.|||||.|||||.||||||||.|||.|.||.||.|||||||||||.||||
BPUM_0602___p 900 CATTCCGCAGCGTGAAACAGGTATGTCTGCATACGAAATGATGCTATCTG 949
BSNT_01108___ 950 AATCACAAGAACGGATGCTTTTGGTTATTGAGCGCGGACGTGAGCAGGAA 999
||||||||||..|.||||||.|.||.|||||....||.||||||||.|||
BPUM_0602___p 950 AATCACAAGAGAGAATGCTTCTAGTCATTGAAAAAGGCCGTGAGCAAGAA 999
BSNT_01108___ 1000 ATCATCGATATTTTTGACAAGTACGATCTTGAAGCGGTTTCTGTCGGACA 1049
|||||.||||||||.||.||.||||||||||||||.||.||.|||||.||
BPUM_0602___p 1000 ATCATTGATATTTTCGAAAAATACGATCTTGAAGCAGTATCAGTCGGTCA 1049
BSNT_01108___ 1050 TGTGACAGATGATAAAATGCTTCGCCTGAC-ACACAAAGGAGAGGTTGTG 1098
|||.|||||.|||||||||||||| .|.|| .||..||||.||.||.||.
BPUM_0602___p 1050 TGTAACAGACGATAAAATGCTTCG-TTTACTTCATCAAGGTGAAGTGGTA 1098
BSNT_01108___ 1099 TGCGAGCTGCCTGTTGATGC-CTTGGCAGAAGAAGCACCGGTTTACCATA 1147
||.|||||.||||||||.|| ||| ||||||||||||||||||||.||.|
BPUM_0602___p 1099 TGTGAGCTTCCTGTTGACGCTCTT-GCAGAAGAAGCACCGGTTTATCACA 1147
BSNT_01108___ 1148 AGCCTTCTCAA--GAGCCTGCTTACTATCGCGAGTTTTTGGAAACGGACG 1195
|||| .|||| ||||||||.||||||||.||||||||.||||||.|.|
BPUM_0602___p 1148 AGCC--GTCAAGTGAGCCTGCATACTATCGTGAGTTTTTAGAAACGAAAG 1195
BSNT_01108___ 1196 TTCAGGCTCC-GCAAATTGAAGATGC------GA-ATGAAACGCTGAAGG 1237
|..|.||||| || .|||..|||||| || ||.||| |.||
BPUM_0602___p 1196 TGGAAGCTCCAGC-GATTACAGATGCTGCACAGACATTAAA----GCAG- 1239
BSNT_01108___ 1238 CCCTTCTTCAGCAGCCGACGATTGCGAGTAAAGAGTGGGTGTATGATCAG 1287
||.|||||||||||.|||||||||||||||||.|||||.|||||||||
BPUM_0602___p 1240 --CTCCTTCAGCAGCCAACGATTGCGAGTAAAGAATGGGTCTATGATCAG 1287
BSNT_01108___ 1288 TATGACTACATGGTGCGCACGAATACAGTTGTCGCTCCTGGGTCTGATGC 1337
||||||||||||||.||.||.|||||.||.||.||.||.||.||||||||
BPUM_0602___p 1288 TATGACTACATGGTTCGGACAAATACCGTCGTTGCACCGGGCTCTGATGC 1337
BSNT_01108___ 1338 TGGTGTTCTCAGAATCCGCGGAACGAAAAAGGCGCTGGCGATGACGACAG 1387
.||.|||.|.||||||||.|||||||||||.||.||.||||||||.||||
BPUM_0602___p 1338 GGGCGTTTTAAGAATCCGTGGAACGAAAAAAGCCCTAGCGATGACAACAG 1387
BSNT_01108___ 1388 ACTGTAACGCGCGTTATCTCTATCTTGATCCTGAAGTCGGAGGGAAAATT 1437
|.||||||||.||||||||.||.||||||||.||.|||||.||||||||.
BPUM_0602___p 1388 ATTGTAACGCACGTTATCTTTACCTTGATCCAGAGGTCGGCGGGAAAATC 1437
BSNT_01108___ 1438 GCTGTCGCTGAAGCAGCGCGCAACATCATTTGCTCAGGCGCAGAACCGCT 1487
||.|||||.||||||||.||.|||||..|.|||||||||||....||.||
BPUM_0602___p 1438 GCCGTCGCAGAAGCAGCACGTAACATTGTCTGCTCAGGCGCTCGTCCACT 1487
BSNT_01108___ 1488 TGCGGTCACAGATAACCTTAACTTCGGAAACCCGGAGAAGCCGGAAATCT 1537
|||.||.|||||||||||.||||||||.|||||.|||||.||.|||||.|
BPUM_0602___p 1488 TGCAGTGACAGATAACCTAAACTTCGGTAACCCAGAGAAACCAGAAATTT 1537
BSNT_01108___ 1538 TCTGGCAGATCGAAAAAGCGGCAGACGGCATAAGCGAAGCGTGC--AATG 1585
|||||||.||.|||||..|.||.|||||.||.||||||||.||| .|.|
BPUM_0602___p 1538 TCTGGCAAATTGAAAAGTCTGCTGACGGGATTAGCGAAGCATGCCGCACG 1587
BSNT_01108___ 1586 TTCTCAGCACTCCGGTTATCGGCGGTAACGTATCGCTTTATAACGAATCA 1635
||.|||||.||.||||||||.||.|||||.||..|.||||||||||||
BPUM_0602___p 1588 --CTAAGCACACCAGTTATCGGTGGAAACGTCTCTTTATATAACGAATCA 1635
BSNT_01108___ 1636 AACGGCACGGCGATCTATCCGACACCAGTTATCGGCATGGTCGGCCTAAT 1685
||.||.||.|||||.||.||.||||||||.||.||.|||||.||..|..|
BPUM_0602___p 1636 AATGGAACAGCGATTTACCCAACACCAGTCATTGGAATGGTTGGTTTGGT 1685
BSNT_01108___ 1686 TGAAGATACAGCGCACATTACAACACAGCAT--TTCAAACAAGCAGGAGA 1733
|||||||||.||.||.|||||.||..| || |||.|.|||||.||.||
BPUM_0602___p 1686 TGAAGATACTGCTCATATTACGACGAA--ATCGTTCCAGCAAGCTGGCGA 1733
BSNT_01108___ 1734 TCTCGTATACGTGATCGGCGAAACAAAACCAGAGTTTGCGGGAAGCGAGC 1783
|.|..|.|.|||.||.||.||.||.||...|||.|||||.||.||.||||
BPUM_0602___p 1734 TGTGATTTTCGTCATTGGTGAGACGAAGGAAGAATTTGCAGGCAGTGAGC 1783
BSNT_01108___ 1784 TGCAAAAAATGACAGAAGGCCGCATTTACGGCAAAGCGCCGCAAATCGAT 1833
|.|||||.||||||||||||||.||||||||.|||||.||..||||.|||
BPUM_0602___p 1784 TTCAAAAGATGACAGAAGGCCGTATTTACGGAAAAGCACCAGAAATTGAT 1833
BSNT_01108___ 1834 CTTGATGTAGAGCTGTCTCGTCAAAAAGCACTGCTTGACGCGATTAAAAA 1883
.|.||.|||||||||.|.||||||.||||.|||||.|..||||||.||||
BPUM_0602___p 1834 TTGGACGTAGAGCTGGCGCGTCAAGAAGCTCTGCTCGCTGCGATTCAAAA 1883
BSNT_01108___ 1884 AGGCTTCGTTCAATCTGCGCATGATGTGTCTGAAGGCGG-CTTAGGCGTA 1932
.||..||||||||||.||.||.||||||||||||||||| ||| ||.|||
BPUM_0602___p 1884 CGGTCTCGTTCAATCCGCACACGATGTGTCTGAAGGCGGACTT-GGTGTA 1932
BSNT_01108___ 1933 GCGATTGCGGAAAGTGTCAT---GA--CGACGGAAAACCTTGGCGCTAAT 1977
||..||||.|||||| .||| || .||||| .||||||||..||
BPUM_0602___p 1933 GCACTTGCTGAAAGT-ACATTTGGAACTGACGG----GCTTGGCGCAGAT 1977
BSNT_01108___ 1978 GT-------GACTGTAGAAGGGGAAGCGGCGTT-ATTATTCTCTGAATCT 2019
.| || |.||||..|.||||| || |||||||..|||..|.
BPUM_0602___p 1978 ATCCAAATCGA-TTTAGACAGCGAAGC----TTCATTATTCAGTGAGACA 2022
BSNT_01108___ 2020 CAATCCCGCTTCGTCGTTTCAGTGAAAAAAGAACATCAAGCTGCGTTTGA 2069
||.||.||.||.||.||..||||||||...||.||.|..|..|||||||.
BPUM_0602___p 2023 CAGTCACGTTTTGTTGTCACAGTGAAACCGGAGCACCGCGAAGCGTTTGC 2072
BSNT_01108___ 2070 AGCAACTGTCAAAGATGCGGTTCATA----TTGGTGAGGTAACAGCTGAC 2115
.||..|||||||||||||| |.| |.|||..|||.|||..|||.
BPUM_0602___p 2073 TGCGGCTGTCAAAGATGCG----AAAGAAGTCGGTACGGTGACAAATGAT 2118
BSNT_01108___ 2116 G----GAATTCTGGCGATTC-AAAACCAAGACGGACAACAAATGATTCAT 2160
| |..|.||| || ||||.|||||.|||||||||..|||||||
BPUM_0602___p 2119 GGTGTGTTTACTG-----TCAAAAATCAAGAAGGACAACAATGGATTCAT 2163
BSNT_01108___ 2161 GCGCAAACG---AAAGAGCTTGAACGCGTATGGAAAGGAGCTATCCCATG 2207
|| |.|| ||.|||||||||||.|.||||||||||||.||||||||
BPUM_0602___p 2164 GC---AGCGGTCAACGAGCTTGAACGTGCATGGAAAGGAGCGATCCCATG 2210
BSNT_01108___ 2208 CTTGCTGAAATCAAAGGCTTAA 2229
|||||||||||||.||||||||
BPUM_0602___p 2211 CTTGCTGAAATCAGAGGCTTAA 2232
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