Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01103 and BPUM_0597
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:43
# Commandline: needle
# -asequence dna-align/BSNT_01103___purK.1.24716.seq
# -bsequence dna-align/BPUM_0597___purK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01103___purK-BPUM_0597___purK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01103___purK-BPUM_0597___purK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01103___purK
# 2: BPUM_0597___purK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1198
# Identity: 822/1198 (68.6%)
# Similarity: 822/1198 (68.6%)
# Gaps: 110/1198 ( 9.2%)
# Score: 2715.5
#
#
#=======================================
BSNT_01103___ 1 TTGTCTAAACAAATCATCTATC----CGGGAGCTGTAATCGGCATTATCG 46
|||.||||.||.|.|||.|.|| ||..|.| |||||.|||||||
BPUM_0597___p 1 TTGGCTAAGCAGACCATTTTTCCAAACGCAACC----ATCGGTATTATCG 46
BSNT_01103___ 47 GCGGCGGCCAGCTTGGGAAAATGATGGCTGTGTCCGCCAAACAAATGGGG 96
||||.|||||||||||.|.|...|||||.||...|||.||.|||||||||
BPUM_0597___p 47 GCGGAGGCCAGCTTGGTAGATACATGGCCGTCAGCGCAAAGCAAATGGGG 96
BSNT_01103___ 97 TATAAAGTCGCGGTCGTTGATCCGGTGAAAGATTCGCCGTGCGGGCAGGT 146
||....|..||.|||.|.||.|||||.|.|.|.||.||.||.||.|||||
BPUM_0597___p 97 TACCGGGCAGCTGTCTTAGACCCGGTCACACAATCTCCTTGTGGACAGGT 146
BSNT_01103___ 147 TGCGGATGTCGAAATTACCGC-TCATTATAATGACCGTGAAGCGATTC-G 194
|||.|||...|||||.||.|| .|| ||||.||||| ||.|..||.|| |
BPUM_0597___p 147 TGCTGATACAGAAATCACAGCGGCA-TATAGTGACC-TGGATGGAATCAG 194
BSNT_01103___ 195 AAAATTGGCTGAAATCAGCGATATCATCACATATGAGTTTGAAAACATCG 244
..|..|.||.||||||||||||.||.|.||.|||||.||||||||.||.|
BPUM_0597___p 195 GCAGCTCGCAGAAATCAGCGATGTCGTGACCTATGAATTTGAAAATATTG 244
BSNT_01103___ 245 ACTATGATGCGCTGCATTGGCTGAAAGATCATGCGTATCTCCCGCAAGGA 294
|.||.|||||.||..||....||||.||..|.||..||.|.|||||||||
BPUM_0597___p 245 ATTACGATGCACTCAATCAATTGAAGGAAGAAGCCAATTTACCGCAAGGA 294
BSNT_01103___ 295 AGTGAGCTGCTGCTCATTACCCAAAACCGTGAAACAGAGAAAAAAGCAAT 344
|||||.||.||.||..|.||.|||||.||.||||||||||||||||..||
BPUM_0597___p 295 AGTGAACTTCTTCTTTTAACTCAAAATCGAGAAACAGAGAAAAAAGGGAT 344
BSNT_01103___ 345 TCAATCCGCGGGCTGTGAAGTCGCACCGTACAGCATC-GTCAAAACAAAG 393
|..|..|||.||||||||||||||.||.|||.||||| .|||..|..||
BPUM_0597___p 345 TGTAGACGCAGGCTGTGAAGTCGCGCCTTACCGCATCATTCATGATGAA- 393
BSNT_01103___ 394 AATGAATTGAAACAGGCGGTACAAGAGCTCGGGTTACCCGCAGTTCTGAA 443
||.||..||.||.|.||.||..|.|.||||||.||.||.||.||.|||||
BPUM_0597___p 394 AAAGAGCTGGAAGACGCAGTGGACGTGCTCGGTTTGCCAGCCGTGCTGAA 443
BSNT_01103___ 444 GACATGCCGCGGCGGGTACGACGGCAAAGGCCAATTTGTGATAAAAGAAG 493
.||.|||.|.|||||.|||||.||.|||||.||.|..||.||.||||||.
BPUM_0597___p 444 AACTTGCAGAGGCGGCTACGATGGAAAAGGACAGTACGTCATCAAAGAAA 493
BSNT_01103___ 494 AGGCGCAAATGGAGCAGGCAGCCGCTCTGTTAGAACACGGAACTTGCATT 543
|.|..||..|..||.|.|||||.||.|||.|...|||.||||||||.|||
BPUM_0597___p 494 AAGGACAGCTTCAGGAAGCAGCTGCACTGCTCACACATGGAACTTGTATT 543
BSNT_01103___ 544 CTTGAAAGCTGGGTTTCTTTTAAAATGGAACTGTCGGTGATCGTC----- 588
.|.||||||||||||.|.|||.|||||||.||.||||||||||||
BPUM_0597___p 544 TTAGAAAGCTGGGTTCCATTTCAAATGGAGCTTTCGGTGATCGTCACTCG 593
BSNT_01103___ 589 -----------GTCAGATCGGTAAACGGTGAAATTTCAACGTTTCCGACA 627
|..|||||| |||| |||.|.| || .
BPUM_0597___p 594 TTCTATTCATGGGGAGATCG-----CGGT---ATTCCCA-GT-------C 627
BSNT_01103___ 628 GCTGAAAACATTCACCACAACAATATTCTTTTCCAAAGCATCGTGCCCGC 677
|||||.||||||||..|..||||.|||.|.|||||.|||||.|||||.||
BPUM_0597___p 628 GCTGAGAACATTCATAAGCACAACATTTTGTTCCAGAGCATTGTGCCTGC 677
BSNT_01103___ 678 ACGGGTAGA-GAAAGGGATTCAGCAGAAGGC-----TGCTGATCTCGCGG 721
|.|.||||| |||| |.||||||.||||||| ||||| ||
BPUM_0597___p 678 AAGAGTAGATGAAA-GCATTCAGGAGAAGGCAAAAGTGCTG-----GC-- 719
BSNT_01103___ 722 TTAA----GCTTGCAGATGAGCTTAACCTTGTTGGACCGCTTGCAGTTGA 767
|| .||.||.||..||||....||.||.||..|.|||||.||.||
BPUM_0597___p 720 --AACGACACTGGCTGAGAAGCTGGGGCTAGTGGGCACACTTGCTGTAGA 767
BSNT_01103___ 768 GATGTTCCTGACAGAGGACGGAGAGCTTTTGGTCAATGAACTGGCGCCAA 817
..|||||||||||.|.||.|||||.||..|.|||||||||||||||||..
BPUM_0597___p 768 ACTGTTCCTGACAAACGATGGAGAACTGCTCGTCAATGAACTGGCGCCTC 817
BSNT_01103___ 818 GACCGCACAATTCTGGGCATTATACGCTGGACCTTTGCGAGACGAGCCAG 867
|.|||||.||||||||.|||||||||||.||..|.||.||||||||.|||
BPUM_0597___p 818 GCCCGCATAATTCTGGTCATTATACGCTCGATTTATGTGAGACGAGTCAG 867
BSNT_01103___ 868 TTTGAGCAGCATATCAGAGCGGTATGCGGGCTTCCGCTTGGGAAGACAG- 916
|||||.|||||..|..|.|||.|||||||..|.||||||||....||||
BPUM_0597___p 868 TTTGAACAGCACGTTCGCGCGATATGCGGTTTACCGCTTGGCGGCACAGC 917
BSNT_01103___ 917 ---ATTTGCTGAAGCCGGGCATGATGGTGAATCTT-CTCGGCGATGAAGT 962
.||..|.|| ||||||||||||||| ||| .|.|||||||||||
BPUM_0597___p 918 CCTTTTATCAGA----GGGCATGATGGTGAA-CTTATTAGGCGATGAAGT 962
BSNT_01103___ 963 GAAGCTTGTTGAGGAAGAC---------------CCGGAGCTTTTAAAAG 997
|||| ||.||||||.|.||||
BPUM_0597___p 963 ---------------AGACATCCCATTAGAGCATCCCGAGCTTCTCAAAG 997
BSNT_01103___ 998 AGGCAAAGCTATATATATACGGAAAACATGAAATCAAAAAAGGCCGCAAA 1047
|.||.|||||.|||.||||.|||||.||||||.|.|||.|||||||||||
BPUM_0597___p 998 AAGCGAAGCTTTATCTATATGGAAAGCATGAAGTAAAAGAAGGCCGCAAA 1047
BSNT_01103___ 1048 ATGGGGCATATTACATTTATGAAGCAGCCTGAAGACGAATGGAT-TCAGG 1096
|||||||||||.||.||||||||.||||..||.||.|||||||| .|| .
BPUM_0597___p 1048 ATGGGGCATATGACCTTTATGAAACAGCTCGATGATGAATGGATGACA-A 1096
BSNT_01103___ 1097 AGATCACAAATAAATGGA-TGAATAGAGACGGAGGACAAGCAGAATGA 1143
|.||||||||.|.||||| |||| |||||.||||||.|.|...|||||
BPUM_0597___p 1097 ACATCACAAAGATATGGACTGAA-AGAGATGGAGGAAACGGGAAATGA 1143
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