Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01093 and BPUM_0592
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:43
# Commandline: needle
# -asequence dna-align/BSNT_01093___pbuG.1.24716.seq
# -bsequence dna-align/BPUM_0592___pbuG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01093___pbuG-BPUM_0592___pbuG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01093___pbuG-BPUM_0592___pbuG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01093___pbuG
# 2: BPUM_0592___pbuG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1338
# Identity: 997/1338 (74.5%)
# Similarity: 997/1338 (74.5%)
# Gaps: 27/1338 ( 2.0%)
# Score: 3649.5
#
#
#=======================================
BSNT_01093___ 1 TTGAAAAAGTATTTTCAGTTTGATGAGCTGGGCACCAGCTATCGCAATGA 50
||||||.|||.|||||||||||||||..|.||.||.|..||.||||..||
BPUM_0592___p 1 TTGAAACAGTTTTTTCAGTTTGATGAATTAGGAACGAATTACCGCAGAGA 50
BSNT_01093___ 51 AATCATTGGCGGATTAACGACTTTTTTATCTATGGCATATATATTGTTCG 100
||||||.||.||.|||||.||.|||||..|.|||||.||.||.|||||.|
BPUM_0592___p 51 AATCATCGGTGGTTTAACCACATTTTTGGCGATGGCTTACATTTTGTTTG 100
BSNT_01093___ 101 TCAATCCGATTACGCTTGCTTT-------GGACAGCGTGAAAGATTTTCC 143
||||||||||.||.|||||||| |.||.| ||||||||
BPUM_0592___p 101 TCAATCCGATCACACTTGCTTTAGTGTCGGTACCG-------GATTTTCC 143
BSNT_01093___ 144 GGAGGCACTGAGAATTGACCAGGGTGCGGTCTTTACGGCGACAGCGCTGG 193
.||...|.|..|||||||.||.||.||.||||||||.|||||.|||||.|
BPUM_0592___p 144 AGATAAATTACGAATTGATCAAGGCGCTGTCTTTACAGCGACGGCGCTAG 193
BSNT_01093___ 194 CGTCTGCAGCAGGCTGTATCTTAATGGGATTAATAGCGAGATATCCGATT 243
|.|||||.|||||.|||||..|.|||||..||||.||.||.|||||||||
BPUM_0592___p 194 CCTCTGCCGCAGGGTGTATTCTGATGGGGCTAATTGCTAGGTATCCGATT 243
BSNT_01093___ 244 GCCATCGCGCCGGGTATGGGGCTGAACGCGTTTTTTGCGTTTTCTGTTGT 293
||.||.||.||.||||||||..|.||.||.|||||.||.||.||.|||||
BPUM_0592___p 244 GCGATTGCTCCAGGTATGGGCTTAAATGCCTTTTTCGCCTTCTCGGTTGT 293
BSNT_01093___ 294 CCTTGGTATGGGTATTTCATGGCAGGCAGCTTTGTCTGGTGTTTTTATTT 343
.|||||.|||||.|||.|||||.|.|||||..|.||||||||.|||.|.|
BPUM_0592___p 294 TCTTGGCATGGGCATTACATGGGAAGCAGCACTTTCTGGTGTGTTTGTAT 343
BSNT_01093___ 344 CAGGCCTTATTTTCGTTGCTCTTTCTTTAACAGGTTTTCGTGAAAAAATC 393
||||..|.|||||||||||.|||||||||||||||||.||||||||||||
BPUM_0592___p 344 CAGGATTGATTTTCGTTGCCCTTTCTTTAACAGGTTTCCGTGAAAAAATC 393
BSNT_01093___ 394 ATCAACGCCATTCCGCCTGAGCTGAAATTGGCAGTCGGTGCGGGGATCGG 443
|||||.||.||||||.|||||||.||..|.||.||.||||||||.||.||
BPUM_0592___p 394 ATCAATGCTATTCCGGCTGAGCTAAAGCTAGCGGTTGGTGCGGGTATTGG 443
BSNT_01093___ 444 CCTGTTTATTACATTCGTTGGTTTGCAAGGCTCAGGAATCATTACTGCAA 493
.||.||.|||||.||.||.|||.|.|||||.||.||.||.||..||...|
BPUM_0592___p 444 TCTATTCATTACGTTTGTCGGTCTACAAGGATCTGGTATTATCGCTAATA 493
BSNT_01093___ 494 ATCCTTCTACGCTCGTCACGATCGGAAACATTCACAGCGGTCCTGTGCTG 543
||..|..|||||||||..||||.|||||||||||.||.||||||||..|.
BPUM_0592___p 494 ATGATAATACGCTCGTTTCGATTGGAAACATTCATAGTGGTCCTGTCTTA 543
BSNT_01093___ 544 TTAACGATTTTCGGTGTGATTGTCACGGTTATTTTAATGGTGCTTCGCGT 593
||||||.|.||.|||.|..|.||.||.||||||||||||||.||.||.||
BPUM_0592___p 544 TTAACGGTGTTTGGTATCGTGGTGACTGTTATTTTAATGGTTCTGCGAGT 593
BSNT_01093___ 594 GAACGCAGGCGTGTTTATCGGGATGCTGTTAACAGCGGTTGCCGGCATGA 643
|||.|||||.||.||.||.||||||||..|.|||||..||||.||.||||
BPUM_0592___p 594 GAATGCAGGTGTCTTCATTGGGATGCTTGTGACAGCTATTGCAGGAATGA 643
BSNT_01093___ 644 TTTTCGGTTTGGTTCCGGTTCCGACTCAAATTGTCGGCAGTGTGCCGAGC 693
||.|.|||.|.||.||.||.|||||.||||||||.||.|||.|.||.||
BPUM_0592___p 644 TTGTTGGTCTTGTCCCAGTACCGACGCAAATTGTGGGAAGTATTCCAAG- 692
BSNT_01093___ 694 CTTG-CGCCGACTTTCGGACAAGCGTGGATTCACCTCCCGGATATTTTCT 742
|||| |.||.||.|||||.|||||.|.||||||..|.||.||.|||||||
BPUM_0592___p 693 CTTGTCTCCAACCTTCGGTCAAGCCTTGATTCATTTGCCAGACATTTTCT 742
BSNT_01093___ 743 CCGTACAAATGCTGATCGTTATTTTAACATTCTTGTTTGTCGGATTTTTT 792
|..|.||||||||..||||.|||||.||.|||||.||.||.||.||.|||
BPUM_0592___p 743 CAATCCAAATGCTTGTCGTGATTTTGACGTTCTTATTCGTTGGGTTCTTT 792
BSNT_01093___ 793 GATACAGCTGGTACACTTGTTGCTGTGGCAACACAAGCTGGTTTAATGAA 842
||||||||.||.||.|||||.|||||.|||||.|||||||||.||||
BPUM_0592___p 793 GATACAGCAGGAACGCTTGTGGCTGTTGCAACCCAAGCTGGTCTAAT--- 839
BSNT_01093___ 843 GGAAAACAAAT----TGCCGCGTGCGGGCCGTGCGCTTTTAGCTGATTCA 888
|||||..||| ||||||||||.||..|.||.|||.||||.||||||
BPUM_0592___p 840 -GAAAAATAATGAGCTGCCGCGTGCAGGAAGAGCACTTCTAGCGGATTCA 888
BSNT_01093___ 889 TCTTCTATTGTGATCGGTGCCGTGCTTGGTACGTCTACAACAACTTCTTA 938
|||||.|||||..|.|||.|..|.|||||.||.||.||.|||||.|||||
BPUM_0592___p 889 TCTTCAATTGTTGTAGGTTCTATTCTTGGAACATCGACGACAACATCTTA 938
BSNT_01093___ 939 CGTGGAATCAAGCTCAGGTGTCGCTGCGGGTGCCCGTTCAGGATTTGCCG 988
.||.|||||.|||||||||||.||.||.|||||.|||||.||||||||..
BPUM_0592___p 939 TGTTGAATCTAGCTCAGGTGTTGCAGCAGGTGCACGTTCTGGATTTGCAT 988
BSNT_01093___ 989 CAATTGTAACAGGGATTCTCTTTTTACTGGCTACGTTTTTCTCTCCGCTC 1038
|..|.||.|||||.|||.||||.||.||.||.|.|||.|||||.|||||.
BPUM_0592___p 989 CTGTCGTGACAGGTATTTTCTTCTTGCTTGCGATGTTCTTCTCGCCGCTT 1038
BSNT_01093___ 1039 CTATCAGTCGTTACGTCAAATGTAACAGCGCCGGCGCTTATTATTGTTGG 1088
.||||..|||||||....|||||.|||||.||.||..|.||.|||||.||
BPUM_0592___p 1039 TTATCCATCGTTACAAAGAATGTGACAGCACCTGCTTTAATCATTGTGGG 1088
BSNT_01093___ 1089 TGCATTGATGGTGGCGCCGCTTGGCAAAATCGCTTGGGATAAGTTCGAAG 1138
.|||.|||||||.||.|||||||..||.||.||.||||||...||.|||.
BPUM_0592___p 1089 GGCACTGATGGTCGCTCCGCTTGCGAAGATTGCATGGGATCGTTTTGAAA 1138
BSNT_01093___ 1139 TGGCCGTTCCTGCTTTCCTTACCATGATCATGATGCCGTTAACGTACAGC 1188
|.||.||.||.||.|||.|.||.|||||.||||||||..|.||.|||||.
BPUM_0592___p 1139 TTGCTGTACCAGCGTTCTTAACGATGATTATGATGCCACTCACATACAGT 1188
BSNT_01093___ 1189 ATAGCGACTGGTATTGCCATCGGATTTATTTTCTATCCGATTACAATGGT 1238
||.||.||.||.|||||..|.||.|||||||||||.||||||||.|||.|
BPUM_0592___p 1189 ATTGCAACAGGGATTGCGGTTGGCTTTATTTTCTACCCGATTACGATGAT 1238
BSNT_01093___ 1239 GTGCAAAGGAAAAGCAAAAGAGGTTCATCCAATCATGTACGGGCTGTTTC 1288
.|..|||||.|||||.|||||..|.|||||.||.|||||.||..|||||.
BPUM_0592___p 1239 CTTTAAAGGGAAAGCCAAAGAAATACATCCGATTATGTATGGATTGTTTG 1288
BSNT_01093___ 1289 TCGTATTTATCCTGTACTTTATCTTCTTAAA--ATAA- 1323
|..|.|||||.||.||||||...|||||||| ||.|
BPUM_0592___p 1289 TGATCTTTATTCTCTACTTTGCTTTCTTAAATCATTAA 1326
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