Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00414 and BPUM_0583
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00414___ybfP.1.24716.seq
# -bsequence dna-align/BPUM_0583___ybfP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00414___ybfP-BPUM_0583___ybfP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00414___ybfP-BPUM_0583___ybfP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00414___ybfP
# 2: BPUM_0583___ybfP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity: 567/974 (58.2%)
# Similarity: 567/974 (58.2%)
# Gaps: 172/974 (17.7%)
# Score: 1435.0
#
#
#=======================================
BSNT_00414___ 1 ATGT---------ATTATGAAAAAGCTGTCCAGAAAACAATCAATTGGAT 41
.||| |..||||.|||.|..|.|||.|||||.|.||||..||
BPUM_0583___y 1 TTGTCCTATCAAGAACATGAGAAAACGATTCAGGAAACATTAAATTATAT 50
BSNT_00414___ 42 TGAATCACATTTACATGAGCAAATATCAAACGAGGATATTGTTAACGTTT 91
||||..|||||| .||.||.||| |||.||.||
BPUM_0583___y 51 TGAACAACATTT---------------GAAAGACGAT----TTACCGCTT 81
BSNT_00414___ 92 CAA-------------------GCTTTTCAAAATTCCATTTTCATCGGAT 122
||| |.|.|||.|..||.||.|||||.||.|
BPUM_0583___y 82 CAAACTCTAGCGAAACACGCTGGTTATTCTAGGTTTCACTTTCACCGTA- 130
BSNT_00414___ 123 TTTTCAAA---------AAGAAGTCGGCATGTCGGTTGCTTCTTATATTC 163
|.|||||| ||||||||.| .||||| .||||.|.|
BPUM_0583___y 131 TATTCAAAAAAGTGATTAAGAAGTCAG-----TGGTTG---ATTATTTAC 172
BSNT_00414___ 164 GGTTAAGACGTCTTGCGAATGCGGCGGCAGCTTTGCTTTATACAGATCAT 213
||..|.|.||..|..|..|.||||||...|.|||..||.|||||||.||.
BPUM_0583___y 173 GGGAACGCCGGATGACCCAAGCGGCGAAGGATTTAATTCATACAGACCAA 222
BSNT_00414___ 214 CGTATTATCGATATTGCTTTGTATTATCAGTTTGAATCTCAAGAAGCATT 263
||....||.||.||.||.||..|.||||..|||...||.||.|||.|.||
BPUM_0583___y 223 CGGGCGATTGACATCGCATTTCAGTATCGATTTAGTTCACAGGAATCCTT 272
BSNT_00414___ 264 TACGAGGACGTTCAAAAAGATGTATCACATGCCGCCAGGAGCATACCGAA 313
|||.||..|.||.||.|||||.|||.|||||.|.||.|.|...||.||.|
BPUM_0583___y 273 TACTAGAGCCTTTAAGAAGATATATGACATGTCACCCGCACGTTATCGGA 322
BSNT_00414___ 314 CAT--TTATGAAACGCTTTACTTCAAAAAAGGAGGAATCTTACATGG--- 358
.|| |||.|.|| |.||.|| ||..||||||||.|..|.||||
BPUM_0583___y 323 AATTATTAAGGAA---TGTAATT--AATGAGGAGGAAACAAATATGGCTG 367
BSNT_00414___ 359 ------AGAAAAAAATGAAAGGCTGGGTATTGAGCGGGAG-----CCATC 397
||||.|.|...|..||.|||.|..||| ||||.| |||||
BPUM_0583___y 368 ATCATCAGAACACACCTACTGGATGGATTATGA-CGGGGGATGCCCCATC 416
BSNT_00414___ 398 CGTTCCAATTCGAAA----TGGGGATTGACCGGGAAAA-TGTACATCA-- 440
.| |.|..|||| |..|||| |.| |||| |||||| ||
BPUM_0583___y 417 TG----ACTATGAAACAGGTTTGGAT--AAC---AAAATTGTACA-CAGT 456
BSNT_00414___ 441 GGGAAAAGCTTCAGGGTATTTAAAGTCAACGATGGTTCAGGATA------ 484
||||..|.| ||.|..||||||||||||| |.||||
BPUM_0583___y 457 GGGACTAAC-TCCGCTTATTTAAAGTCAA---------AAGATAAAAAAG 496
BSNT_00414___ 485 -TCGGTGAATTTGCGACGATGATGCAGCAATTCAAAGCAGATCGCTATCT 533
| ||.|..||.||.||..|||||||||||.|.||..|.||.||.||...
BPUM_0583___y 497 CT-GGAGGTTTCGCAACATTGATGCAGCAAATTAAGTCTGAGCGTTACAA 545
BSNT_00414___ 534 AGGAAAAAGGCTTCGTCTATCAAGTTTTATCAAAA-CAAAGGGGGTGCAG 582
|||..||.||||||...|.||...||||.|.|||| |.|| |..|||||
BPUM_0583___y 546 AGGGGAACGGCTTCAATTTTCTGCTTTTGTTAAAAGCGAA-GATGTGCA- 593
BSNT_00414___ 583 CATTTTGCCTCA------CTTTGGATGCGGGTTGA-CAGTGCTGCTGATG 625
.|.|||| .|.||||||.|..|||| ||.| ||.|.|.||
BPUM_0583___y 594 -----AGGCTCAGCTGGTTTATGGATGAGAATTGACCACT-CTTCAGGTG 637
BSNT_00414___ 626 ATGTTCTCCAATTTGATAATATGAGCAACAGACCTATTACCGGAACAACC 675
|..||||....|||||.|||||||..|||.|.||.|||||.||||||
BPUM_0583___y 638 AAATTCTTGCGTTTGACAATATGATGAACCGTCCCATTACAGGAACA--- 684
BSNT_00414___ 676 AAT---TGGAATCATTATGCTATCGTTTTAGATGTCCCAGAAAATAGCGC 722
||| ||||||||||.|..|.||||..|||||||.||||.|||.||.|.
BPUM_0583___y 685 AATGGCTGGAATCATTTTAGTGTCGTACTAGATGTTCCAGTAAAAAGTGA 734
BSNT_00414___ 723 TGTGATATCTTTTGGCGTTCAATTATCT----GGGCCGGGTCAGGTGTGG 768
.||.||..|||||||||| |||| || ||.||.|||||..|.|||
BPUM_0583___y 735 AGTCATTGCTTTTGGCGT---ATTA-CTACAAGGTCCAGGTCACATTTGG 780
BSNT_00414___ 769 ATGGATCATGTTGTTTTTGAAGAGGTAGATGAGAGCGTTCCTTCAACA-A 817
|||||..|..||..||||.||...||||||||.||.||.||....||| |
BPUM_0583___y 781 ATGGACGAACTTAGTTTTAAAATTGTAGATGAAAGTGTGCCAGTGACAGA 830
BSNT_00414___ 818 ACCTTGAAATGCCGGGAGAACTTTTA---GATGAACCGGTAAATTTATCT 864
|| .||||.|.|.| ||.|.|||| ||||||||.||.||||||..|
BPUM_0583___y 831 AC---AAAATACTGTG-GATCATTTAGAGGATGAACCAGTGAATTTAAAT 876
BSNT_00414___ 865 TTTGAAGAGGAACTACAAAAATAG 888
|||||||...||
BPUM_0583___y 877 TTTGAAGGCTAA------------ 888
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