Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00414 and BPUM_0583

See Amino acid alignment / Visit BSNT_00414 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:17
# Commandline: needle
#    -asequence dna-align/BSNT_00414___ybfP.1.24716.seq
#    -bsequence dna-align/BPUM_0583___ybfP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00414___ybfP-BPUM_0583___ybfP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00414___ybfP-BPUM_0583___ybfP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00414___ybfP
# 2: BPUM_0583___ybfP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity:     567/974 (58.2%)
# Similarity:   567/974 (58.2%)
# Gaps:         172/974 (17.7%)
# Score: 1435.0
# 
#
#=======================================

BSNT_00414___      1 ATGT---------ATTATGAAAAAGCTGTCCAGAAAACAATCAATTGGAT     41
                     .|||         |..||||.|||.|..|.|||.|||||.|.||||..||
BPUM_0583___y      1 TTGTCCTATCAAGAACATGAGAAAACGATTCAGGAAACATTAAATTATAT     50

BSNT_00414___     42 TGAATCACATTTACATGAGCAAATATCAAACGAGGATATTGTTAACGTTT     91
                     ||||..||||||               .||.||.|||    |||.||.||
BPUM_0583___y     51 TGAACAACATTT---------------GAAAGACGAT----TTACCGCTT     81

BSNT_00414___     92 CAA-------------------GCTTTTCAAAATTCCATTTTCATCGGAT    122
                     |||                   |.|.|||.|..||.||.|||||.||.| 
BPUM_0583___y     82 CAAACTCTAGCGAAACACGCTGGTTATTCTAGGTTTCACTTTCACCGTA-    130

BSNT_00414___    123 TTTTCAAA---------AAGAAGTCGGCATGTCGGTTGCTTCTTATATTC    163
                     |.||||||         ||||||||.|     .|||||   .||||.|.|
BPUM_0583___y    131 TATTCAAAAAAGTGATTAAGAAGTCAG-----TGGTTG---ATTATTTAC    172

BSNT_00414___    164 GGTTAAGACGTCTTGCGAATGCGGCGGCAGCTTTGCTTTATACAGATCAT    213
                     ||..|.|.||..|..|..|.||||||...|.|||..||.|||||||.||.
BPUM_0583___y    173 GGGAACGCCGGATGACCCAAGCGGCGAAGGATTTAATTCATACAGACCAA    222

BSNT_00414___    214 CGTATTATCGATATTGCTTTGTATTATCAGTTTGAATCTCAAGAAGCATT    263
                     ||....||.||.||.||.||..|.||||..|||...||.||.|||.|.||
BPUM_0583___y    223 CGGGCGATTGACATCGCATTTCAGTATCGATTTAGTTCACAGGAATCCTT    272

BSNT_00414___    264 TACGAGGACGTTCAAAAAGATGTATCACATGCCGCCAGGAGCATACCGAA    313
                     |||.||..|.||.||.|||||.|||.|||||.|.||.|.|...||.||.|
BPUM_0583___y    273 TACTAGAGCCTTTAAGAAGATATATGACATGTCACCCGCACGTTATCGGA    322

BSNT_00414___    314 CAT--TTATGAAACGCTTTACTTCAAAAAAGGAGGAATCTTACATGG---    358
                     .||  |||.|.||   |.||.||  ||..||||||||.|..|.||||   
BPUM_0583___y    323 AATTATTAAGGAA---TGTAATT--AATGAGGAGGAAACAAATATGGCTG    367

BSNT_00414___    359 ------AGAAAAAAATGAAAGGCTGGGTATTGAGCGGGAG-----CCATC    397
                           ||||.|.|...|..||.|||.|..||| ||||.|     |||||
BPUM_0583___y    368 ATCATCAGAACACACCTACTGGATGGATTATGA-CGGGGGATGCCCCATC    416

BSNT_00414___    398 CGTTCCAATTCGAAA----TGGGGATTGACCGGGAAAA-TGTACATCA--    440
                     .|    |.|..||||    |..||||  |.|   |||| |||||| ||  
BPUM_0583___y    417 TG----ACTATGAAACAGGTTTGGAT--AAC---AAAATTGTACA-CAGT    456

BSNT_00414___    441 GGGAAAAGCTTCAGGGTATTTAAAGTCAACGATGGTTCAGGATA------    484
                     ||||..|.| ||.|..|||||||||||||         |.||||      
BPUM_0583___y    457 GGGACTAAC-TCCGCTTATTTAAAGTCAA---------AAGATAAAAAAG    496

BSNT_00414___    485 -TCGGTGAATTTGCGACGATGATGCAGCAATTCAAAGCAGATCGCTATCT    533
                      | ||.|..||.||.||..|||||||||||.|.||..|.||.||.||...
BPUM_0583___y    497 CT-GGAGGTTTCGCAACATTGATGCAGCAAATTAAGTCTGAGCGTTACAA    545

BSNT_00414___    534 AGGAAAAAGGCTTCGTCTATCAAGTTTTATCAAAA-CAAAGGGGGTGCAG    582
                     |||..||.||||||...|.||...||||.|.|||| |.|| |..||||| 
BPUM_0583___y    546 AGGGGAACGGCTTCAATTTTCTGCTTTTGTTAAAAGCGAA-GATGTGCA-    593

BSNT_00414___    583 CATTTTGCCTCA------CTTTGGATGCGGGTTGA-CAGTGCTGCTGATG    625
                          .|.||||      .|.||||||.|..|||| ||.| ||.|.|.||
BPUM_0583___y    594 -----AGGCTCAGCTGGTTTATGGATGAGAATTGACCACT-CTTCAGGTG    637

BSNT_00414___    626 ATGTTCTCCAATTTGATAATATGAGCAACAGACCTATTACCGGAACAACC    675
                     |..||||....|||||.|||||||..|||.|.||.|||||.||||||   
BPUM_0583___y    638 AAATTCTTGCGTTTGACAATATGATGAACCGTCCCATTACAGGAACA---    684

BSNT_00414___    676 AAT---TGGAATCATTATGCTATCGTTTTAGATGTCCCAGAAAATAGCGC    722
                     |||   ||||||||||.|..|.||||..|||||||.||||.|||.||.|.
BPUM_0583___y    685 AATGGCTGGAATCATTTTAGTGTCGTACTAGATGTTCCAGTAAAAAGTGA    734

BSNT_00414___    723 TGTGATATCTTTTGGCGTTCAATTATCT----GGGCCGGGTCAGGTGTGG    768
                     .||.||..||||||||||   |||| ||    ||.||.|||||..|.|||
BPUM_0583___y    735 AGTCATTGCTTTTGGCGT---ATTA-CTACAAGGTCCAGGTCACATTTGG    780

BSNT_00414___    769 ATGGATCATGTTGTTTTTGAAGAGGTAGATGAGAGCGTTCCTTCAACA-A    817
                     |||||..|..||..||||.||...||||||||.||.||.||....||| |
BPUM_0583___y    781 ATGGACGAACTTAGTTTTAAAATTGTAGATGAAAGTGTGCCAGTGACAGA    830

BSNT_00414___    818 ACCTTGAAATGCCGGGAGAACTTTTA---GATGAACCGGTAAATTTATCT    864
                     ||   .||||.|.|.| ||.|.||||   ||||||||.||.||||||..|
BPUM_0583___y    831 AC---AAAATACTGTG-GATCATTTAGAGGATGAACCAGTGAATTTAAAT    876

BSNT_00414___    865 TTTGAAGAGGAACTACAAAAATAG    888
                     |||||||...||            
BPUM_0583___y    877 TTTGAAGGCTAA------------    888


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