Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00859 and BPUM_0577
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:36
# Commandline: needle
# -asequence dna-align/BSNT_00859___yddI.1.24716.seq
# -bsequence dna-align/BPUM_0577___yddI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00859___yddI-BPUM_0577___yddI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00859___yddI-BPUM_0577___yddI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00859___yddI
# 2: BPUM_0577___yddI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 585
# Identity: 316/585 (54.0%)
# Similarity: 316/585 (54.0%)
# Gaps: 171/585 (29.2%)
# Score: 744.0
#
#
#=======================================
BSNT_00859___ 1 ATGAAAACACATATTGCATGGGCT--TCAGCTTGTTTNTTATTNATATTG 48
||||||| |.||||| || |||| | ||.|.||.| .|||| ||.||
BPUM_0577___y 1 ATGAAAA-AGATATT--AT-GGCTAGT-AGGTGGTGTTGTATTGATTTT- 44
BSNT_00859___ 49 TTGACGGGATTTTTNACGA--------ATGGACAGCAAACGTATAAGATT 90
.|||.|| |||| ||| ||.||.|
BPUM_0577___y 45 -----AGGAATT---ACGAGTTATTACATG--------ACTTACA----- 73
BSNT_00859___ 91 GAAAAGTTAAANGAT---AAAAATGAAGTTTTGA---------------- 121
|.||.||.|| ||| ||||||.|||.|.|||
BPUM_0577___y 74 -ACAAATTGAATGATGCAAAAAATCAAGCTCTGAAAGAGAAGCAAAAGAT 122
BSNT_00859___ 122 -GCGAA-AAAATTAAGGAANTGAACCATATAGAATCAACAAGNAGCGCTT 169
|.||| |||||.||..|| |||...||..|||| |||.
BPUM_0577___y 123 CGAGAATAAAATGAATCAAGTGACGAATTCAGAA------------GCTG 160
BSNT_00859___ 170 CNGAAA------ANAAGGCATTTTTTGAAGCGTTTTTTAATTACT----- 208
| ||.| | ||| ||||||||||||||.|||.|.|| |
BPUM_0577___y 161 CAGACATGAATCAAAAG---TTTTTTGAAGCGTTCTTTCAATA-TGAAGA 206
BSNT_00859___ 209 --CCGAC-ATAGATAA---ACGATATGAAACAGTTAAGAAGCACACAACT 252
|.||| |||||.|| .||.|..||| |||||..||.|
BPUM_0577___y 207 TGCGGACGATAGAGAAGGTGCGGTTAGAA--AGTTAGCAACC-------- 246
BSNT_00859___ 253 GGAAAAGGGTTTGA-TTATGCATTCCCTTCTCGTTCTGA----TCAAAAG 297
||.||||.|.||| ||.||||||.||.|| || ||.||||
BPUM_0577___y 247 -GATAAGGCTATGAGTTTTGCATTTCCCTC-------GAAGGCTCCAAAG 288
BSNT_00859___ 298 CACACAGTCAGTG------TGCAAAGTGAGTTACTTTCACTAGAGAGTTA 341
|.||| .|||| ||||..|.||.||..|.||.||.||.||.||
BPUM_0577___y 289 -AAACA--TAGTGTAACAATGCAGGGAGATTTGTTATCTCTCGAAAGCTA 335
BSNT_00859___ 342 TTCAAAGCCGTTAGATG-AGTCTCATGAA---TTGTTT-------TTAAA 380
|||||||..|.|||||| || .||.|.| ||.||| .||||
BPUM_0577___y 336 TTCAAAGAAGGTAGATGAAG--ACAGGGAGCTTTATTTGAATGAGGTAAA 383
BSNT_00859___ 381 CATTGTTGAAGTCGCCACAACTGCAAATTCAGTCACTACGAATCAAGTGT 430
.|||| ||| ..||||..|||.|..||||.||..|.|||....
BPUM_0577___y 384 AATTG-------CGC--TTACTGTGAATGCCATCACCACACAACAAACCA 424
BSNT_00859___ 431 TAATTGTACAAAC-GACT--ATGAAGAAAG-----AAAAGGATGGTTGGT 472
|.|||.|.||||| ||.| ||.||.|||| |||.||||.|||
BPUM_0577___y 425 TTATTATTCAAACGGAGTTAATAAAAAAAGAGAATAAATGGATTGTT--- 471
BSNT_00859___ 473 TAGTCGATAATGTGCAGGTTAAGGGAAATGGATAA 507
||||||||||||||.|| ||||
BPUM_0577___y 472 -----GATAATGTGCAGGTCAA---------ATAA 492
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