Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00859 and BPUM_0577

See Amino acid alignment / Visit BSNT_00859 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:36
# Commandline: needle
#    -asequence dna-align/BSNT_00859___yddI.1.24716.seq
#    -bsequence dna-align/BPUM_0577___yddI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00859___yddI-BPUM_0577___yddI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00859___yddI-BPUM_0577___yddI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00859___yddI
# 2: BPUM_0577___yddI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 585
# Identity:     316/585 (54.0%)
# Similarity:   316/585 (54.0%)
# Gaps:         171/585 (29.2%)
# Score: 744.0
# 
#
#=======================================

BSNT_00859___      1 ATGAAAACACATATTGCATGGGCT--TCAGCTTGTTTNTTATTNATATTG     48
                     ||||||| |.|||||  || ||||  | ||.|.||.| .|||| ||.|| 
BPUM_0577___y      1 ATGAAAA-AGATATT--AT-GGCTAGT-AGGTGGTGTTGTATTGATTTT-     44

BSNT_00859___     49 TTGACGGGATTTTTNACGA--------ATGGACAGCAAACGTATAAGATT     90
                          .|||.||   ||||        |||        ||.||.|     
BPUM_0577___y     45 -----AGGAATT---ACGAGTTATTACATG--------ACTTACA-----     73

BSNT_00859___     91 GAAAAGTTAAANGAT---AAAAATGAAGTTTTGA----------------    121
                      |.||.||.|| |||   ||||||.|||.|.|||                
BPUM_0577___y     74 -ACAAATTGAATGATGCAAAAAATCAAGCTCTGAAAGAGAAGCAAAAGAT    122

BSNT_00859___    122 -GCGAA-AAAATTAAGGAANTGAACCATATAGAATCAACAAGNAGCGCTT    169
                      |.||| |||||.||..|| |||...||..||||            |||.
BPUM_0577___y    123 CGAGAATAAAATGAATCAAGTGACGAATTCAGAA------------GCTG    160

BSNT_00859___    170 CNGAAA------ANAAGGCATTTTTTGAAGCGTTTTTTAATTACT-----    208
                     | ||.|      | |||   ||||||||||||||.|||.|.|| |     
BPUM_0577___y    161 CAGACATGAATCAAAAG---TTTTTTGAAGCGTTCTTTCAATA-TGAAGA    206

BSNT_00859___    209 --CCGAC-ATAGATAA---ACGATATGAAACAGTTAAGAAGCACACAACT    252
                       |.||| |||||.||   .||.|..|||  |||||..||.|        
BPUM_0577___y    207 TGCGGACGATAGAGAAGGTGCGGTTAGAA--AGTTAGCAACC--------    246

BSNT_00859___    253 GGAAAAGGGTTTGA-TTATGCATTCCCTTCTCGTTCTGA----TCAAAAG    297
                      ||.||||.|.||| ||.||||||.||.||       ||    ||.||||
BPUM_0577___y    247 -GATAAGGCTATGAGTTTTGCATTTCCCTC-------GAAGGCTCCAAAG    288

BSNT_00859___    298 CACACAGTCAGTG------TGCAAAGTGAGTTACTTTCACTAGAGAGTTA    341
                      |.|||  .||||      ||||..|.||.||..|.||.||.||.||.||
BPUM_0577___y    289 -AAACA--TAGTGTAACAATGCAGGGAGATTTGTTATCTCTCGAAAGCTA    335

BSNT_00859___    342 TTCAAAGCCGTTAGATG-AGTCTCATGAA---TTGTTT-------TTAAA    380
                     |||||||..|.|||||| ||  .||.|.|   ||.|||       .||||
BPUM_0577___y    336 TTCAAAGAAGGTAGATGAAG--ACAGGGAGCTTTATTTGAATGAGGTAAA    383

BSNT_00859___    381 CATTGTTGAAGTCGCCACAACTGCAAATTCAGTCACTACGAATCAAGTGT    430
                     .||||       |||  ..||||..|||.|..||||.||..|.|||....
BPUM_0577___y    384 AATTG-------CGC--TTACTGTGAATGCCATCACCACACAACAAACCA    424

BSNT_00859___    431 TAATTGTACAAAC-GACT--ATGAAGAAAG-----AAAAGGATGGTTGGT    472
                     |.|||.|.||||| ||.|  ||.||.||||     |||.||||.|||   
BPUM_0577___y    425 TTATTATTCAAACGGAGTTAATAAAAAAAGAGAATAAATGGATTGTT---    471

BSNT_00859___    473 TAGTCGATAATGTGCAGGTTAAGGGAAATGGATAA    507
                          ||||||||||||||.||         ||||
BPUM_0577___y    472 -----GATAATGTGCAGGTCAA---------ATAA    492


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